View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_4 (Length: 629)
Name: NF3554_high_4
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 583; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 8536758 - 8537368
Alignment:
| Q |
1 |
catataatgagatccataacatcaaatagaattcagttagtttgaagatcaatctcaagtttaatgatactcaaaataacaaaagataaactagcccact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8536758 |
catataatgagatccataacatcaaatagaattcggttagtttgaagatcaatctcaagtttaatgatactcaaaataacaaaagataaactagcccact |
8536857 |
T |
|
| Q |
101 |
atagcatattttaccaaaatgataaaatatgtaatcaaagaaacaaaataagtaggtccacagttatagaaacggatgcaaagaaaattggtaaaaaact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8536858 |
atagcatattttaccaaaatgataaaatatgtaatcaaagaaacaaaataagtaggtccacagttatagaaacggatgcaaagaaaattggtaaaaaact |
8536957 |
T |
|
| Q |
201 |
actaactataactgaatcagtatcttaatcaacctaaccatttcttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacatgttcaca |
300 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8536958 |
actaactataactaaaacagtatcttaatcaacctaaccattttttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacatgttcaca |
8537057 |
T |
|
| Q |
301 |
aacacatatgtttcttcattcttgtcaccatcaagcaaatattcacattttgtaattagggaagtgatcttatttttgcttcgcgtaggaagcaaagaac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
8537058 |
aacacatatgtttcttcattcttgtcaccatcaagcaaatattcacattttgtaattagggaagtgatcttatttttgctttgcgtgggaagcaaagaac |
8537157 |
T |
|
| Q |
401 |
taacattcatatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgcttt |
500 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8537158 |
taacattcgtatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgcttt |
8537257 |
T |
|
| Q |
501 |
gaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttca |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537258 |
gaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttca |
8537357 |
T |
|
| Q |
601 |
tcctcacaaga |
611 |
Q |
| |
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||||||||||| |
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| T |
8537358 |
tcctcacaaga |
8537368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 415 - 596
Target Start/End: Complemental strand, 8383911 - 8383730
Alignment:
| Q |
415 |
ttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagctt |
514 |
Q |
| |
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||||| |||||| ||| ||||| ||||| || ||||||||||| ||||| | | ||||||| | ||||| |||||||| || ||||||||||| || | |
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| T |
8383911 |
ttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgtcttcagccttgaaattctctgcct |
8383812 |
T |
|
| Q |
515 |
cttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggt |
596 |
Q |
| |
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|||| || ||||||| |||||||||||||||||| |||||| ||||||| |||| |||||||||| |||||||||| |||| |
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| T |
8383811 |
cttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattcccacaggt |
8383730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 411 - 596
Target Start/End: Original strand, 8601103 - 8601288
Alignment:
| Q |
411 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
510 |
Q |
| |
|
||||||||| ||||| ||| | |||| ||||| ||||||| | |||| ||||| | | ||||||||||||||| |||||||| |||||||||||||| |
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| T |
8601103 |
atccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatctttgaaattctca |
8601202 |
T |
|
| Q |
511 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggt |
596 |
Q |
| |
|
|||||||| || ||||||| |||||| || ||||||| |||||| ||||||| ||||| ||||| |||| | |||||||| |||| |
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|
| T |
8601203 |
gcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttcttgcctattcccacaggt |
8601288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 411 - 585
Target Start/End: Original strand, 8544765 - 8544939
Alignment:
| Q |
411 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
510 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| | |||||||||||| |||| ||| ||| || ||||||| ||||||| || |||||||| ||| |
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| T |
8544765 |
atccttcattactttcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtca |
8544864 |
T |
|
| Q |
511 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttctta |
585 |
Q |
| |
|
||||| || || ||||||| |||||| || |||||||||||||| ||||| ||||||| ||||| || |||||| |
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|
| T |
8544865 |
gcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattctta |
8544939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 411 - 605
Target Start/End: Original strand, 8609049 - 8609243
Alignment:
| Q |
411 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
510 |
Q |
| |
|
||||||||| |||||| || ||||| || || ||||||||| |||| ||||| | | |||||| || ||||| | |||||| |||||||||||||| |
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| T |
8609049 |
atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctca |
8609148 |
T |
|
| Q |
511 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctc |
605 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| | || ||| |||| || ||||| ||||||||||||||||| ||| |||||| ||||| |
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|
| T |
8609149 |
gcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggtttcttcctc |
8609243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 499 - 606
Target Start/End: Complemental strand, 29582792 - 29582685
Alignment:
| Q |
499 |
ttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggttt |
598 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||| |||||||| ||||||||| || |||| ||||| ||||| ||||| ||||| |||| ||||| |
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|
| T |
29582792 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggttt |
29582693 |
T |
|
| Q |
599 |
catcctca |
606 |
Q |
| |
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| |||||| |
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|
| T |
29582692 |
cttcctca |
29582685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 433 - 575
Target Start/End: Original strand, 8569465 - 8569607
Alignment:
| Q |
433 |
ttgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagcttcttgaattattctcttaa |
532 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| ||| |||||| |||||||| ||||||| || ||||||||||||||||| || || ||||||| || |
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|
| T |
8569465 |
ttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaa |
8569564 |
T |
|
| Q |
533 |
tttcatcagttgataatcttccaatttcattagttatggtaat |
575 |
Q |
| |
|
||| | ||||||||||||| | ||||||||||| ||||| |
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|
| T |
8569565 |
tttgtccccttgataatcttcccttctcattagttattgtaat |
8569607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 585
Target Start/End: Original strand, 8580828 - 8581003
Alignment:
| Q |
410 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
509 |
Q |
| |
|
|||||| ||| |||||| |||| ||||| ||||| || ||||||||||||||||| | | |||||||||||||| ||||||| || || ||| | || |
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|
| T |
8580828 |
tatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtcttgagccttaaaaatttc |
8580927 |
T |
|
| Q |
510 |
agcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttctta |
585 |
Q |
| |
|
||||| | ||| ||| ||| |||||| || |||| | ||||||| ||||||| ||||| |||||| | |||||| |
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|
| T |
8580928 |
agcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttctta |
8581003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 528
Target Start/End: Original strand, 8575431 - 8575548
Alignment:
| Q |
411 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
510 |
Q |
| |
|
||||||||| | |||| || |||||| ||||| || ||||| ||||||||||| | |||||||||||||| ||||||| || |||||| | ||| |
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| T |
8575431 |
atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttca |
8575530 |
T |
|
| Q |
511 |
gcttcttgaattattctc |
528 |
Q |
| |
|
||||||||||| |||||| |
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| T |
8575531 |
gcttcttgaatcattctc |
8575548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 410 - 587
Target Start/End: Original strand, 12527635 - 12527812
Alignment:
| Q |
410 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
509 |
Q |
| |
|
|||||||||| | |||| |||||| ||| |||||||||||||||||||| ||||| | | |||||| |||||||| || ||||| || ||||||||||| |
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| T |
12527635 |
tatccttcatgattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctc |
12527734 |
T |
|
| Q |
510 |
agcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttatt |
587 |
Q |
| |
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|||||| || || |||||| |||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||||||| |
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| T |
12527735 |
agcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgtaatatctttcttatt |
12527812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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