View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_high_41 (Length: 253)

Name: NF3554_high_41
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_high_41
NF3554_high_41
[»] chr2 (7 HSPs)
chr2 (1-240)||(27581385-27581622)
chr2 (1-240)||(34984915-34985154)
chr2 (1-240)||(27542492-27542733)
chr2 (53-240)||(27543658-27543845)
chr2 (1-238)||(27582984-27583223)
chr2 (1-240)||(34980468-34980707)
chr2 (1-240)||(34992870-34993109)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27581385 - 27581622
Alignment:
Q  1 aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccattgtgtacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  27581385 aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaggcttcaatctataaaccttgtccagaaacttccattgtgtacatt 27581484  T
Q  101 ggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa 200  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27581485 ggattttgattt--tcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa 27581582  T
Q  201 attgtttcaaatattcaatatcatcgagaattttgtacct 240  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  27581583 attgtttcaaatattcaatatcatggagaattttgtacct 27581622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34985154 - 34984915
Alignment:
Q  1 aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccattgtgtacatt 100  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||  |||||||||||||  ||||||||| |||||||||||||||| ||||||    
T  34985154 aagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaaaacttccattgtatacatt 34985055  T
Q  101 ggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa 200  Q
    | |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |  ||||    
T  34985054 gaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgcatcaacacagccaa 34984955  T
Q  201 attgtttcaaatattcaatatcatcgagaattttgtacct 240  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  34984954 attgtttcaaatattcaaaatcatcgagaatttcgtacct 34984915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27542492 - 27542733
Alignment:
Q  1 aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccattgtgtacatt 100  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||| ||   ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  27542492 aagtatttcaactagtttagttggacttatcttaatcaatgccatgttccgaaaagcttcaatctgcaaaccttgtccaaaaactttcattgtgtacatt 27542591  T
Q  101 ggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa 200  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  27542592 ggattttggtttcgacacaaatcaaaactaggtaaagtttaaaattctccaacttcaaccaacctattaatctccattaatgttgcatcaacccgaccat 27542691  T
Q  201 attgtttcaaatattca--atatcatcgagaattttgtacct 240  Q
    |||||||||||| ||||  |||||||||||||||| ||||||    
T  27542692 attgtttcaaattttcaatatatcatcgagaatttcgtacct 27542733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 27543845 - 27543658
Alignment:
Q  53 gaagcttcaatctataaaccttgtccaaaaacttccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaa 152  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  27543845 gaagcttcaatctgcaaaccatgtccaaaaacttccattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaa 27543746  T
Q  153 cttcaaccaacctaataatctccattaatgttgcatcaacccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacct 240  Q
    || ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  27543745 ctccaagcaacctaacaatctccattaatgttgcatcaacccaaccaaattgtttcaaatattcaatatcatcgagaatttcgtacct 27543658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27583223 - 27582984
Alignment:
Q  1 aagtaattcaactagtttagttggaattatcttaaccaa--tgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccattgtgtaca 98  Q
    |||||||||| |||||||||||| |  ||| |||| |||  ||||||||| |  |||||||||||| | |||||||||||||||| ||||||||||||||    
T  27583223 aagtaattcatctagtttagttgaacatatattaatcaacatgccatgtctcgagaagcttcaatcaacaaaccttgtccaaaaatttccattgtgtaca 27583124  T
Q  99 ttggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgacc 198  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  27583123 ttggattttggtttcgacacaaattaaaactaggtaaagtttgaagctctccaactccaaccaacctaacaatctccattgatgttgcatcaacccgacc 27583024  T
Q  199 aaattgtttcaaatattcaatatcatcgagaattttgtac 238  Q
    ||||||||||||||||| ||||| ||||||||||| ||||    
T  27583023 aaattgtttcaaatattaaatattatcgagaatttcgtac 27582984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34980707 - 34980468
Alignment:
Q  1 aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccattgtgtacatt 100  Q
    ||||||||||||||||||||||||  ||||||||| |||| |||||||||  ||||||||||||   ||||||||||||||||||||| ||||  |||||    
T  34980707 aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttgtccaaaaacttcctttgttgacatt 34980608  T
Q  101 ggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa 200  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||| | ||| |||  | ||||| | |||||||||| ||| ||    
T  34980607 ggattttgatttcgacacaaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa 34980508  T
Q  201 attgtttcaaatattcaatatcatcgagaattttgtacct 240  Q
    ||||||||||||||||||||| ||| ||||||| ||||||    
T  34980507 attgtttcaaatattcaatataatcaagaatttcgtacct 34980468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34993109 - 34992870
Alignment:
Q  1 aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccattgtgtacatt 100  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||| ||||  ||| |||||||||  ||||||||||||||||| ||| ||||  |||||    
T  34993109 aagtacttcaactagtttagttggacttatcttaatcaatgccatatcccgtgaaccttcaatctgcaaaccttgtccaaaaacgtcctttgttgacatt 34993010  T
Q  101 ggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa 200  Q
    |||| |||  |||| ||| ||||||||||||| |  |||||||| |||||||||||||||| | ||| || ||||||||||| |||||||||| ||| ||    
T  34993009 ggatcttggattcgacacgaatcaaaactaggcagtgtttgaagatctccaacttcaaccatcttaacaagctccattaatgatgcatcaacctgactaa 34992910  T
Q  201 attgtttcaaatattcaatatcatcgagaattttgtacct 240  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  34992909 attgtttcaaatattcaatattatcgagaatttcgtacct 34992870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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