View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_49 (Length: 240)
Name: NF3554_high_49
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 29657488 - 29657266
Alignment:
| Q |
18 |
aaatacacacttcaaaattaaaacaaaatttactataaaagatagaatgggccaaccacggtatcagggcatttcagtgcctttgacttgttattgaaat |
117 |
Q |
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| T |
29657488 |
aaatgcacacttcaaaattaaaacaaaatttactataaaagatagaatgggccaaccacggtatcagggcatttcagtgcctttgacttgttattaaaat |
29657389 |
T |
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| Q |
118 |
gtcattattcattgatttaacagagatgcaagttcattatgtagtaattgtattataatatatataaaatcataaaaacaaggatcaacaaacaactaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29657388 |
gtcattattcattgatttaacagagatgcaagttcattatgtagtaattgtattataatatatataaaatcataaaaacaaggatcaacaaacaactaaa |
29657289 |
T |
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| Q |
218 |
ccttttcttactatgttaaattt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
29657288 |
ccttttcttactatgttaaattt |
29657266 |
T |
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