View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_high_51 (Length: 238)

Name: NF3554_high_51
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_high_51
NF3554_high_51
[»] scaffold0213 (2 HSPs)
scaffold0213 (85-174)||(1016-1105)
scaffold0213 (14-73)||(1093-1152)
[»] chr3 (2 HSPs)
chr3 (105-174)||(13915877-13915946)
chr3 (15-64)||(13915963-13916012)
[»] chr7 (2 HSPs)
chr7 (97-174)||(9564978-9565055)
chr7 (135-220)||(6627286-6627371)
[»] scaffold0064 (1 HSPs)
scaffold0064 (97-168)||(50968-51039)
[»] chr1 (2 HSPs)
chr1 (87-174)||(18384793-18384880)
chr1 (14-73)||(18384744-18384803)
[»] chr6 (1 HSPs)
chr6 (84-220)||(21708218-21708343)
[»] chr2 (2 HSPs)
chr2 (85-146)||(31589631-31589692)
chr2 (22-73)||(31589680-31589731)


Alignment Details
Target: scaffold0213 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 1105 - 1016
Alignment:
Q  85 aaaactccaaatgtaagttattctgtgacttcctctgcgtcgattagtgttccacatgttttgactaagtttggcaaccttgttgagtct 174  Q
    |||| ||| |||||||||| | |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||    
T  1105 aaaattcctaatgtaagttctcctgtgacttcctctgcgtcgattattgttccaccttttttgactaagtttggcaaccttgttcagtct 1016  T

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Target: scaffold0213; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 1152 - 1093
Alignment:
Q  14 caaaggccagtggtaagattgttcatgctaggaaagaatggaaacccaaaactcctaatg 73  Q
    |||||| ||||||||||| | |||| |||||||||||||||||||| |||| ||||||||    
T  1152 caaaggtcagtggtaagagtcttcaagctaggaaagaatggaaacctaaaattcctaatg 1093  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 13915946 - 13915877
Alignment:
Q  105 ttctgtgacttcctctgcgtcgattagtgttccacatgttttgactaagtttggcaaccttgttgagtct 174  Q
    ||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  13915946 ttctgtgacttactttgcgtcaattagtgttccacctgttttgactaagtttggcaaccttgttcagtct 13915877  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 13916012 - 13915963
Alignment:
Q  15 aaaggccagtggtaagattgttcatgctaggaaagaatggaaacccaaaa 64  Q
    ||||| ||| ||||||| |||||| |||||||||||||||||||||||||    
T  13916012 aaaggtcagcggtaagagtgttcaagctaggaaagaatggaaacccaaaa 13915963  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 9565055 - 9564978
Alignment:
Q  97 gtaagttattctgtgacttcctctgcgtcgattagtgttccacatgttttgactaagtttggcaaccttgttgagtct 174  Q
    ||||||| || ||| ||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| |||||    
T  9565055 gtaagttcttttgtaacttcctctgcgtcgattaatgttccacctgttttgactaagtctggcaacgttgttcagtct 9564978  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 6627286 - 6627371
Alignment:
Q  135 tccacatgttttgactaagtttggcaaccttgttgagtctgtgcatgacgtctataagccccattccatgtcaaagttgtatgttg 220  Q
    ||||| |||||||||| ||| |  ||||| |||||||| ||||||||||||| ||||||| ||||||||||| |  ||||||||||    
T  6627286 tccacctgttttgactgagtctaacaaccctgttgagtatgtgcatgacgtcaataagcctcattccatgtcgagtttgtatgttg 6627371  T

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Target: scaffold0064 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 50968 - 51039
Alignment:
Q  97 gtaagttattctgtgacttcctctgcgtcgattagtgttccacatgttttgactaagtttggcaaccttgtt 168  Q
    ||||||| |||| |||||||||||||||||||||||||||||| | |||| ||||| | |||||||||||||    
T  50968 gtaagttcttctctgacttcctctgcgtcgattagtgttccacctattttaactaaatctggcaaccttgtt 51039  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 18384793 - 18384880
Alignment:
Q  87 aactccaaatgtaagttattctgtgacttcctctgcgtcgattagtgttccacatgttttgactaagtttggcaaccttgttgagtct 174  Q
    |||||| |||||||||| |  |||||||||||||||||| ||||||||||||| ||||||||| || | ||| ||||||||| |||||    
T  18384793 aactcctaatgtaagttctcttgtgacttcctctgcgtcaattagtgttccacttgttttgacaaaatctggaaaccttgttcagtct 18384880  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 18384744 - 18384803
Alignment:
Q  14 caaaggccagtggtaagattgttcatgctaggaaagaatggaaacccaaaactcctaatg 73  Q
    |||||| | ||||||||| |||||| ||||||||| |||||||||| | |||||||||||    
T  18384744 caaaggtcggtggtaagagtgttcaagctaggaaataatggaaacctagaactcctaatg 18384803  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 21708218 - 21708343
Alignment:
Q  84 gaaaactccaaatgtaagttattctgtgacttcctctgcgtcgattagtgttccacatgttttgactaagtttggcaaccttgttgagtctgtgcatgac 183  Q
    ||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| |||     |||      |||||||||||||||| |||  ||      
T  21708218 gaaaacttcaaatgtaagttcttctatgacttcctctgtgtcgattagtgttccacctgt-----cta------gcaaccttgttgagtcagtgtttgtt 21708306  T
Q  184 gtctataagccccattccatgtcaaagttgtatgttg 220  Q
    ||||||||||| ||||||| |||||||||| ||||||    
T  21708307 gtctataagcctcattccaagtcaaagttgcatgttg 21708343  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 31589692 - 31589631
Alignment:
Q  85 aaaactccaaatgtaagttattctgtgacttcctctgcgtcgattagtgttccacatgtttt 146  Q
    |||||||| |||| ||||  |||||| |||||||||||||||||||||||||||| ||||||    
T  31589692 aaaactcctaatgaaagtccttctgttacttcctctgcgtcgattagtgttccacctgtttt 31589631  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 31589731 - 31589680
Alignment:
Q  22 agtggtaagattgttcatgctaggaaagaatggaaacccaaaactcctaatg 73  Q
    |||||||||| |||||| ||||||||| |||||||||| |||||||||||||    
T  31589731 agtggtaagagtgttcaagctaggaaacaatggaaacctaaaactcctaatg 31589680  T

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