View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3554_high_9 (Length: 500)
Name: NF3554_high_9
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 7041551 - 7041079
Alignment:
| Q |
18 |
aaaagatcagatcgtgattcataagaaagaatcgcaattcatcatagtgaatcgagattcatcttaatatatcgggagtcaagatgaaattcatatttaa |
117 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7041551 |
aaaagatcagatagtgattcataagaaagaatcgcaattcatcatagtgaatcgagattcatcttaatatatcgggagtcaagatgaaattcatattaaa |
7041452 |
T |
|
| Q |
118 |
agtagatataaactagaggttcatcttggctgaatttaattatgtatcgaatcgaaatacgactgacatgtatcataagatattgatgctcatgaatgta |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7041451 |
agtaggtataaactagaggttcatcttggctgaatttaattatgtatcaaatcgaaatacgactgacatgtatcataagatattgatgctcatgaatgta |
7041352 |
T |
|
| Q |
218 |
ttgaaatattgtttttattatttacagttgagattacttctcattctaaaacaaattgcgtactttagagaaattaaatctaagaataacactacatata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7041351 |
ttgaaatattgtttttattatttacagttgagattacttctcattctaaaacaaattgcgcactttagagaaattaaatctaagaataacactacatata |
7041252 |
T |
|
| Q |
318 |
tggtaacaacaccggtttaaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgca |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7041251 |
tggtaacaacaccggtttaaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgca |
7041152 |
T |
|
| Q |
418 |
tgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatgcttc |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7041151 |
tgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatgcttc |
7041079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 295 - 486
Target Start/End: Complemental strand, 7048394 - 7048202
Alignment:
| Q |
295 |
atctaagaataacactacatatatggtaacaacaccggttt-aaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagcga |
393 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
7048394 |
atctaagaaaaacactacctatatgctaacaacaccggttttaaaagaaataaactctacattagaaagagaaaatcttcacctgtatatcaaagagcgg |
7048295 |
T |
|
| Q |
394 |
tatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatg |
486 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
7048294 |
tatccttttttgcttagatttgcatgaaactcaacggtactaaagatctcacgcttaaaatcagtagtgtaacatcgttcccatgttcctatg |
7048202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 295 - 486
Target Start/End: Complemental strand, 7057233 - 7057041
Alignment:
| Q |
295 |
atctaagaataacactacatatatggtaacaacaccggttt-aaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagcga |
393 |
Q |
| |
|
||||||||| | |||||| |||||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
7057233 |
atctaagaaaaccactacctatatgctaacaacaccggttttaaaagaaataaacactacattagaaagagaaaatcttcacctgtatatcaaagagcgg |
7057134 |
T |
|
| Q |
394 |
tatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
7057133 |
tatccttttttgcttagatttgcatgaaactcaacgctactaaaaatctcacgctcaaaatcagtacggtaacatcgttcccattttcctatg |
7057041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 365 - 490
Target Start/End: Complemental strand, 7028756 - 7028631
Alignment:
| Q |
365 |
aaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgta |
464 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7028756 |
aaaatcttcacctgtatatcaaagagcggtatccttttttgcttagattcacatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgta |
7028657 |
T |
|
| Q |
465 |
acatcgttcccatttccctatgcttc |
490 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7028656 |
acatcgttcccatttccctatgcttc |
7028631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 294 - 486
Target Start/End: Complemental strand, 6995791 - 6995598
Alignment:
| Q |
294 |
aatctaagaataacactacata--tatggtaacaacaccggtttaaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagc |
391 |
Q |
| |
|
|||| ||||| ||||||||||| |||||| ||||||| || ||||| || ||||||||||||| ||| |||||||||||||||||| |||||||| | |
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|
| T |
6995791 |
aatccaagaaaaacactacatagatatggtgacaacacgagtctaaaaagaaaaaactctacatta-aaatagaaaatattcacctgtaaatcaaagacc |
6995693 |
T |
|
| Q |
392 |
gatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatg |
486 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||| ||||| || ||||||| |||||||||| ||| |||||| |||||||||||||||||| |
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|
| T |
6995692 |
ggtatccttttttgcttagatttacatgaaactcaaagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatg |
6995598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 7057455 - 7057295
Alignment:
| Q |
31 |
gtgattcataagaaagaatcgcaattcatcatagtgaatcgagattcatcttaatatatcgggagtcaagatgaaattcatatttaaagtagatataaac |
130 |
Q |
| |
|
|||||||||||||| || || |||||||| | |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||| |
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|
| T |
7057455 |
gtgattcataagaacgattcagaattcatcgttgtgaatcgagattcatcttaatgtatcgggactcaagatgagattcatatttaaaatagatataaac |
7057356 |
T |
|
| Q |
131 |
tagaggttcatcttggctgaatttaattatgtatcgaatcgaaatacgactgacatgtatc |
191 |
Q |
| |
|
|||||||| | ||||||| | |||||| ||||||||||||| |||| ||| ||||||||| |
|
|
| T |
7057355 |
tagaggtttgtattggctggacttaattttgtatcgaatcgagatacaactcacatgtatc |
7057295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 7015160 - 7015012
Alignment:
| Q |
336 |
aaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctacta |
435 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7015160 |
aaaagaaa-aaacgctacatta-aaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaacgctacca |
7015063 |
T |
|
| Q |
436 |
aagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatg |
486 |
Q |
| |
|
|| || ||| |||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
7015062 |
aatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatg |
7015012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 315 - 486
Target Start/End: Complemental strand, 7005390 - 7005220
Alignment:
| Q |
315 |
atatggtaacaacaccggtttaaaagaaataaactctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagattt |
414 |
Q |
| |
|
||||||| ||||||| || ||||| || |||| |||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
7005390 |
atatggtgacaacacgagtctaaaaagaaaaaacgctacatta-aaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagattt |
7005292 |
T |
|
| Q |
415 |
gcatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgtaacatcgttcccatttccctatg |
486 |
Q |
| |
|
||||||||||||| ||||| ||| || ||| |||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
7005291 |
gcatgaaactcaaagctaccaaatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatg |
7005220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 345 - 484
Target Start/End: Complemental strand, 7022039 - 7021900
Alignment:
| Q |
345 |
aaactctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctca |
444 |
Q |
| |
|
|||| ||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7022039 |
aaacactaaattacaaagagaaaaacttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctgctaaagatctcc |
7021940 |
T |
|
| Q |
445 |
cgctcaaaatcagtagtgtaacatcgttcccatttcccta |
484 |
Q |
| |
|
||||||||||||| ||||||| || | |||||| |||| |
|
|
| T |
7021939 |
ttctcaaaatcagtattgtaacaacgataccattttccta |
7021900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 7048524 - 7048404
Alignment:
| Q |
106 |
attcatatttaaagtagatataaactagaggttcatcttggctgaatttaattatgtatcgaatcgaaatacgactgacatgtatcataagatattgatg |
205 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| | ||||| | | |||||| ||||||||||| | ||| | | |||||||| || |||||||||| |
|
|
| T |
7048524 |
attcatatttaaaattgatataaactagaggtttgtattggccggacttaattttgtatcgaatctagatataattcacatgtattgtatgatattgatg |
7048425 |
T |
|
| Q |
206 |
ctcatgaatgtattgaaatat |
226 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
7048424 |
ttcatgagtgtattgaaatat |
7048404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 7048579 - 7048519
Alignment:
| Q |
19 |
aaagatcagatcgtgattcataagaaagaatcgcaattcatcatagtgaatcgagattcat |
79 |
Q |
| |
|
||||||||| | |||||||||||||| || | | |||||||| |||||||||||||||||| |
|
|
| T |
7048579 |
aaagatcaggtagtgattcataagaacgatttggaattcatcgtagtgaatcgagattcat |
7048519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 30035398 - 30035342
Alignment:
| Q |
148 |
tgaatttaattatgtatcgaatcgaaatacgactgacatgtatcataagatattgat |
204 |
Q |
| |
|
|||||| ||||| |||| |||| || |||||||| ||||||||||||||||| |||| |
|
|
| T |
30035398 |
tgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgat |
30035342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 18900665 - 18900633
Alignment:
| Q |
53 |
aattcatcatagtgaatcgagattcatcttaat |
85 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
18900665 |
aattcatcatagtgaatcgagattcatcataat |
18900633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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