View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_10 (Length: 469)
Name: NF3554_low_10
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 26135392 - 26135828
Alignment:
| Q |
11 |
atgaaggtagtactcagtcttcttctttataatttctcctttgatgtttcaccaaactatcgccattgtcctgtgtataaaatggtgttaatgccaaaat |
110 |
Q |
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| T |
26135392 |
atgaaggtagtactcagtcttcttctttataatttctcctttgatgtttcaccaaactatcgccattgtcctgtgtataaaatggtgttaatgccaaaat |
26135491 |
T |
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| Q |
111 |
atggtgttagacttcttgtaagcaaggttcagaacacagaaaaatgattatggttctgttatgctttttctattgtcacaaagtacaatcacatagcaat |
210 |
Q |
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| T |
26135492 |
atggtgttagacttcttgtaagcaaggttcagaacacagaaaaatgattatggttctgttatgctttttctattgtcacaaagtacaatcacatagcaat |
26135591 |
T |
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| Q |
211 |
agctagtatttatggtgactttgttggttttaactgctattaataatacatcatgttgtatcaataatgcatcttattgtctatattctctggtgttttc |
310 |
Q |
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| T |
26135592 |
agctagtat-------gactttgttggttttaacacctattaataatacatcatgttgtatcaataatgcatcttattgtctatattctctggtgctttc |
26135684 |
T |
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| Q |
311 |
tatcttgtgcatatgttgaaatatataggaatttttaagaaacaaaaactttttgatcctcattgaattttatgtatctcggtttctaagaatttcatta |
410 |
Q |
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| T |
26135685 |
tatcttgtgcatatgttgaaatatataggaatttttaagaaacaaaaactttttgatcctcgttgaattttatgtatctcggtttctaagaatttcatta |
26135784 |
T |
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| Q |
411 |
cattgttgatgatgataccatttaattggaagataatgaggatt |
454 |
Q |
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| T |
26135785 |
cattgttgatgatgataccatttaattggaagataatgaggatt |
26135828 |
T |
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