View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_12 (Length: 455)
Name: NF3554_low_12
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 174 - 445
Target Start/End: Original strand, 48416476 - 48416747
Alignment:
| Q |
174 |
caatttttattcaatctgtcaaaataaacaaaggtgttgaatcccataaagtaaagtcataattattaacatcatagatagatgagatgttgtaacacgt |
273 |
Q |
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| T |
48416476 |
caatttttaattaatctgtcaaaataaacgaaggtgttgaatcccataaagtaaagccataattattaacaccatagatagatgggatgttgtaacacgt |
48416575 |
T |
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| Q |
274 |
aacaaatcaagaccatccaatctaaaacatgtgattgagaccgtttagaaagattttataactatattaatttgaaccgttcgaattttaattaatgatc |
373 |
Q |
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| T |
48416576 |
aacaaatcaagaccatccaatctaaaacatgtgattgagatcgtttagaaagattttataactatattaatttgaaccggtcgaattttaattaatgatc |
48416675 |
T |
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| Q |
374 |
gagatctaataatatgaaaattgcctgctttattacaccaccgaatcacgatcgagttaaatgttgcctttg |
445 |
Q |
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| T |
48416676 |
gagatctaataatatgaaaattgcgtgctttattacaccaccgaatcacgatcgagttaaatgttgcctttg |
48416747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 48416305 - 48416444
Alignment:
| Q |
18 |
aagtttaccttaatacaaaaatttgatttattttcttagttgg-----tgcaaaaatattacaaaaaattaatcatcttaactatgttgacacgacaatc |
112 |
Q |
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| T |
48416305 |
aagtttaccttaatacaaaaatttgatttattttcttagttggatgcatgcaaaaatattacaaaaaattaatcatcttaactatgttgatacgacaatc |
48416404 |
T |
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| Q |
113 |
tatttcctatcatttgcaagacactcgaagaatattattt |
152 |
Q |
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| T |
48416405 |
tatttcctatcatttgcaagacactcgaagaatattattt |
48416444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 378
Target Start/End: Original strand, 35003430 - 35003536
Alignment:
| Q |
272 |
gtaacaaatcaagaccatccaatctaaaacatgtgattgagaccgtttagaaagattttataactatattaatttgaaccgttcgaattttaattaatga |
371 |
Q |
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||||||||||| || ||||| |||||||||||||| |||||| | || ||| |||||||||| | ||| ||||||||| ||| | ||||||||||| |
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| T |
35003430 |
gtaacaaatcaggatcatccgatctaaaacatgtggttgagattggtttgaatgattttataattgcattgatttgaaccattcaatctttaattaatgg |
35003529 |
T |
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| Q |
372 |
tcgagat |
378 |
Q |
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| T |
35003530 |
tcgagat |
35003536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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