View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_low_14 (Length: 442)

Name: NF3554_low_14
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_low_14
NF3554_low_14
[»] chr4 (11 HSPs)
chr4 (25-432)||(55724547-55724954)
chr4 (219-424)||(48312995-48313200)
chr4 (211-424)||(19733015-19733227)
chr4 (211-424)||(23641617-23641830)
chr4 (211-424)||(19756168-19756381)
chr4 (211-424)||(19783425-19783638)
chr4 (211-424)||(23647275-23647488)
chr4 (211-424)||(47419705-47419918)
chr4 (210-424)||(11586209-11586422)
chr4 (211-427)||(1827566-1827782)
chr4 (366-432)||(55299514-55299580)
[»] scaffold1350 (2 HSPs)
scaffold1350 (210-432)||(437-659)
scaffold1350 (29-212)||(689-872)
[»] chr3 (15 HSPs)
chr3 (211-432)||(16179833-16180054)
chr3 (211-431)||(19891571-19891791)
chr3 (211-424)||(17077324-17077536)
chr3 (211-424)||(962189-962402)
chr3 (211-424)||(48569049-48569262)
chr3 (18-193)||(19891841-19892016)
chr3 (32-204)||(12333903-12334075)
chr3 (211-424)||(2365179-2365392)
chr3 (211-424)||(34331841-34332054)
chr3 (211-421)||(19919255-19919465)
chr3 (211-284)||(15313222-15313295)
chr3 (211-299)||(12334114-12334202)
chr3 (301-432)||(12341371-12341502)
chr3 (26-201)||(17077107-17077282)
chr3 (98-201)||(15313338-15313441)
[»] chr8 (16 HSPs)
chr8 (219-424)||(13878521-13878726)
chr8 (210-422)||(10530563-10530775)
chr8 (211-432)||(20825193-20825414)
chr8 (211-424)||(41664394-41664607)
chr8 (211-424)||(32267455-32267668)
chr8 (211-430)||(8300698-8300917)
chr8 (211-424)||(7925287-7925500)
chr8 (26-204)||(13878296-13878474)
chr8 (211-424)||(9923502-9923715)
chr8 (29-204)||(20825453-20825628)
chr8 (354-416)||(17700389-17700451)
chr8 (110-193)||(41664261-41664344)
chr8 (364-418)||(14345099-14345153)
chr8 (137-198)||(13091488-13091549)
chr8 (137-198)||(43247455-43247516)
chr8 (363-403)||(12135143-12135183)
[»] chr6 (15 HSPs)
chr6 (211-432)||(17605360-17605581)
chr6 (211-432)||(21629148-21629369)
chr6 (211-424)||(18681600-18681813)
chr6 (211-424)||(13938619-13938832)
chr6 (210-424)||(15956008-15956215)
chr6 (211-432)||(17576743-17576964)
chr6 (32-204)||(17605149-17605321)
chr6 (211-424)||(24766450-24766663)
chr6 (32-204)||(21628937-21629109)
chr6 (211-424)||(2554506-2554718)
chr6 (29-204)||(17576529-17576704)
chr6 (27-193)||(15955793-15955959)
chr6 (29-193)||(2554768-2554932)
chr6 (18-81)||(13938994-13939058)
chr6 (378-430)||(18589230-18589282)
[»] chr5 (18 HSPs)
chr5 (219-424)||(27796385-27796589)
chr5 (219-432)||(33385007-33385220)
chr5 (211-424)||(33170559-33170772)
chr5 (211-432)||(25856465-25856686)
chr5 (210-396)||(27165120-27165305)
chr5 (211-424)||(42514621-42514834)
chr5 (211-424)||(28534702-28534915)
chr5 (211-424)||(30731340-30731553)
chr5 (59-204)||(33384815-33384960)
chr5 (29-204)||(25856251-25856426)
chr5 (211-424)||(23239284-23239495)
chr5 (110-204)||(27796636-27796730)
chr5 (335-432)||(8299333-8299430)
chr5 (18-201)||(27164895-27165079)
chr5 (363-403)||(30509201-30509241)
chr5 (363-403)||(30549544-30549584)
chr5 (29-193)||(30731126-30731290)
chr5 (25-81)||(38358743-38358799)
[»] chr2 (7 HSPs)
chr2 (211-424)||(33515219-33515432)
chr2 (18-204)||(33514993-33515180)
chr2 (243-432)||(28253622-28253811)
chr2 (353-432)||(12646443-12646522)
chr2 (346-432)||(2206983-2207069)
chr2 (140-202)||(9667929-9667991)
chr2 (146-210)||(13551729-13551793)
[»] chr1 (7 HSPs)
chr1 (211-424)||(6051504-6051717)
chr1 (211-430)||(35541929-35542148)
chr1 (211-432)||(47622103-47622324)
chr1 (140-198)||(39431445-39431503)
chr1 (25-201)||(19171265-19171441)
chr1 (137-198)||(20796819-20796880)
chr1 (362-427)||(39431184-39431249)
[»] scaffold0034 (1 HSPs)
scaffold0034 (211-424)||(104869-105082)
[»] chr7 (3 HSPs)
chr7 (211-424)||(4937154-4937367)
chr7 (211-430)||(29968869-29969088)
chr7 (211-424)||(17721536-17721749)
[»] scaffold0472 (1 HSPs)
scaffold0472 (211-430)||(4147-4366)
[»] scaffold1137 (1 HSPs)
scaffold1137 (211-348)||(585-722)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 25 - 432
Target Start/End: Original strand, 55724547 - 55724954
Alignment:
Q  25 cccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaat 124  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55724547 cccctttttgtttttgttagcagcagaagaactcaatgtgttgatgaaagccttgatggaagcaaatatattcacgggatacagggtggggggcgctaat 55724646  T
Q  125 ccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgctttacgggctgaaagttaatttc 224  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55724647 ccagtagtagtgtctcatttagaatttgctgatgacacgctcttaatagggaataaaagttgggctaatgttcgtgctttacgggctgaaagttaatttc 55724746  T
Q  225 cataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttctctatt 324  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55724747 cataaaagctctctggttgggatcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttctctatt 55724846  T
Q  325 tgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcct 424  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55724847 tgggtattccgattggaggcgatccgcgtcggttattattttggaagcctgttattaatcgtattaaatctagattgtctatttggcatagtcggttcct 55724946  T
Q  425 ctcctttg 432  Q
    ||||||||    
T  55724947 ctcctttg 55724954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 424
Target Start/End: Complemental strand, 48313200 - 48312995
Alignment:
Q  219 aatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttc 318  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||  ||| ||| ||| |    
T  48313200 aatttccataaaagctctctggtgggggtgaatattaatgcctcttggttgtctgaagcagcttctgtgttgggttgcaaagtggaaaaaattccgttcc 48313101  T
Q  319 tctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcg 418  Q
    ||||||||||  ||| |||||| || ||| |||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||  ||||||||||||    
T  48313100 tctatttgggccttccgattgggggtgattcgcgccggttattattttggaagcctgttgttaattgtattaaaactagattgtctggttggcatagtcg 48313001  T
Q  419 gttcct 424  Q
    ||||||    
T  48313000 gttcct 48312995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 19733015 - 19733227
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||||||||  ||||||| |||||||| ||||  || ||| |||||||||||||||||||| | ||| ||||| ||||||||||    
T  19733015 tgaaagtaaatttccataaaagctcaatggttggtgtcaatatcaatgtttcatggttgtctgaagcggcttctgtgttaggtcgcaaagtgggtaaagt 19733114  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       ||| |||||||||||| ||| |||||| ||||||| |||||||||||| ||||||||||||| ||||||||| |||||| ||||||||| |  || |    
T  19733115 gtcgttcctctatttgggtcttccgattgggggcgatcggcgtcggttattgttttgggagcctg-tgttaatcgaattaaagctagattgtttggttag 19733213  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  19733214 catagtcggttcct 19733227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 23641617 - 23641830
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  23641617 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 23641716  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  23641717 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 23641816  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  23641817 caaagtcggttcct 23641830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 19756381 - 19756168
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| || || ||||| || |||||||| | ||| ||||||||||  || ||| |||| ||||||||||||||| ||||||||||| | |||||| |    
T  19756381 tgaaagtaaactttcataagagttctctggtagtggttaatattaatgattcgtggttgtcagaagcggcttctgtgttgggttgcaaagtaggtaaaat 19756282  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||||||||||||  |   |||||| || ||||||||| |  | || |||||||| |||||||| ||||||||||||||||||||||||  ||||    
T  19756281 tccgtttctctatttggggctctcgattgggggtgatccgcgttgtcttttgttttgggaacctgttgtgaatcgtattaaatctagattgtctggttgg 19756182  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  19756181 caaagtcggttcct 19756168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 19783425 - 19783638
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| || || ||||| || |||||||| | ||| ||||||||||  || ||| |||| ||||||||||||||| ||||||||||| | |||||| |    
T  19783425 tgaaagtaaactttcataagagttctctggtagtggttaatattaatgattcgtggttgtcagaagcggcttctgtgttgggttgcaaagtaggtaaaat 19783524  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||||||||||||  |   |||||| || ||||||||| |  | || |||||||| |||||||| ||||||||||||||||||||||||  ||||    
T  19783525 tccgtttctctatttggggctctcgattgggggtgatccgcgttgtcttttgttttgggaacctgttgtgaatcgtattaaatctagattgtctggttgg 19783624  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  19783625 caaagtcggttcct 19783638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 23647275 - 23647488
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  23647275 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 23647374  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| |||||||||||||   | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  23647375 cccgtttctctatttggggctctcgattgggggcgatccgcgtcatcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 23647474  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  23647475 caaagtcggttcct 23647488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 47419918 - 47419705
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | || ||| |    
T  47419918 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggcaaaat 47419819  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  47419818 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 47419719  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  47419718 caaagtcggttcct 47419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 424
Target Start/End: Original strand, 11586209 - 11586422
Alignment:
Q  210 ctgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaag 309  Q
    |||||| ||||||  || |||||||||||||| |||||||| ||||||||||||||| || || |||||||| ||||  ||||||||||| ||||| |||    
T  11586209 ctgaaaattaattatcacaaaagctctctggtaggggtcaacattaatgcctcttggttgactaaagcggctcctgttttgggttgcaaattgggt-aag 11586307  T
Q  310 ttctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttg 409  Q
    | ||||| |||||||||||  ||| |||||     |||||  | || |||||||||||||| |||||||||||||| |||||||||||| ||||||  ||    
T  11586308 tactgttcctctatttgggccttcagattgcgtctgatccttgccgtttattattttgggaacctgttgttaatcgaattaaatctagactgtctagatg 11586407  T
Q  410 gcatagtcggttcct 424  Q
    | | |||||||||||    
T  11586408 gaagagtcggttcct 11586422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 211 - 427
Target Start/End: Original strand, 1827566 - 1827782
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    |||| |||||||| ||||| ||||||||||| ||||| ||||||||||  || ||| |||| |||||||| |||||| ||||||||||| | |||||| |    
T  1827566 tgaaggttaattttcataagagctctctggtaggggttaatattaatgattcgtggttgtcagaagcggcctctgtgttgggttgcaaagtaggtaaaat 1827665  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       |||||||||||||||  |    ||||| || ||||| |||||  | || |||||||| ||| |||| ||||||||||||||||||||||||  ||||    
T  1827666 ctcgtttctctatttggggctctcaattgggggtgatccacgtcgtattttgttttgggaacctattgtgaatcgtattaaatctagattgtctggttgg 1827765  T
Q  411 catagtcggttcctctc 427  Q
    || ||||||||||||||    
T  1827766 caaagtcggttcctctc 1827782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 55299580 - 55299514
Alignment:
Q  366 tgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcctctcctttg 432  Q
    ||||| ||| |||| |||||||||||||||||||||||   |||| |||||||||| ||||| ||||    
T  55299580 tgggaacctattgtgaatcgtattaaatctagattgtcgggttggaatagtcggtttctctcttttg 55299514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 210 - 432
Target Start/End: Complemental strand, 659 - 437
Alignment:
Q  210 ctgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||    
T  659 ctgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggttgtctgaagcggcttctgtgttgggttgcaaagtgggtaaag 560  T
Q  310 ttctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttg 409  Q
    ||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||    
T  559 ttccgtttctctatttgggtcttccgattggaggcgatccacgtcggttattattttgggagcctgttgttaatcgtattaaatctagattttctggttg 460  T
Q  410 gcatagtcggttcctctcctttg 432  Q
    |||||||||||||||||||||||    
T  459 gcatagtcggttcctctcctttg 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 872 - 689
Alignment:
Q  29 tttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccag 128  Q
    ||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||| || |||||||||| ||||||||||||||||| ||    
T  872 tttttgtttttgttagcagcataaggactcaatgtgttgatgcaagccttggtggaagcaaatatctttacgggatacaaggtggggggcgctaatctag 773  T
Q  129 tagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgctttacgggctg 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  772 tagtagtgtctcatttacaatttgctgatgacacgctcttgatagggaataaaagttgggctaatgttcgtgctttaagggctg 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 16180054 - 16179833
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  16180054 tgaaagtaaatttccataaaagttctctagttggtgtcaatattaatgcctcttggttgtctgaagcggcttctgtgttgggttgcaaagtgggtaaagt 16179955  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       |||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  16179954 gtcgtttctctatttgggtcttccgattggaggcgatccgcgacggttattaatttgggagcctgttgttaatcgaattaaatctagattgtctagttgg 16179855  T
Q  411 catagtcggttcctctcctttg 432  Q
    ||||||| |||||| |||||||    
T  16179854 catagtcagttcctttcctttg 16179833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 211 - 431
Target Start/End: Complemental strand, 19891791 - 19891571
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  19891791 tgaaagtcaatttccataaaagctctctcgttggggtcaatattaatgcctcttggttgtctgaagcggcttctgtgttgggttgcaaagtgggtaaagt 19891692  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||||||||||||  ||| |||||| |||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||  || |    
T  19891691 tccgtttctctatttgggccttccgattgggggcgatccacgctggttattattttgggagcctattgttaatcgtattaaatctagattgtctggttag 19891592  T
Q  411 catagtcggttcctctccttt 431  Q
    |||||||||||||| ||||||    
T  19891591 catagtcggttcctttccttt 19891571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 17077324 - 17077536
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  17077324 tgaaagtaaatttccataaa-gctctctggtcggggtcaatattaatgcctcttggttgtctgaagcggcttctgtgttgggttgcaaagtgggtaaagt 17077422  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       ||| |||||||||||| ||  |||||||||| ||  ||| ||||||||||||||| |||||||||||||||| |||||| |||||||||||  ||||    
T  17077423 gtcgttcctctatttgggtctttcgattggaggcaatttgcgccggttattattttggaagcctgttgttaatcgaattaaaactagattgtctggttgg 17077522  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  17077523 catagtcggttcct 17077536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 962189 - 962402
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| || ||||||||||||||||| | ||||||||| ||||||||||    
T  962189 tgaaagtaaatttccataaaagctctctggttggtgtcaatatcaatgcttcttggttggctgaagcggcttctgtgttaggttgcaaagtgggtaaagt 962288  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | ||| |||||||||||| ||| |||||| ||||||||||| |||||||| |||| |||||| |||||||| || |||||| |||||||||||  ||||    
T  962289 accgttcctctatttgggtcttcagattgggggcgatccgcgccggttattgttttaggagccagttgttaaacgaattaaagctagattgtctggttgg 962388  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  962389 catagtcggttcct 962402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 48569049 - 48569262
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||| |    
T  48569049 tgaaagtaaattttcataaaagctctctagtgggggtgaatattaatgcctcttggttgtctgaagcggcttctgtgttggattgcaaagtgggtaaaat 48569148  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    |  ||| |||||||||||  ||| |||||  || |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||  ||||    
T  48569149 ttcgttcctctatttgggccttccgattgagggtgatccgcgccgattattattttgggagcctgttgttaatcgtataaaatctagattgtctggttgg 48569248  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  48569249 catagtcggttcct 48569262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 19892016 - 19891841
Alignment:
Q  18 cctctatccccttt-ttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggg 116  Q
    |||||||| ||||| |||||||||||||||||||||||  | |||||| ||| |||||| ||||| ||||||||| | || ||||||||||| |||||||    
T  19892016 cctctatctcctttcttgtttttgttagcagcagaaggtttgaatgtggtgatgaaagccttggttgaagcaaatgtctttacgggatacagagtggggg 19891917  T
Q  117 gcgctaatccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaat 193  Q
     ||||||||  |||||  ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  19891916 -cgctaatcttgtagtgatgtctcatttacaatttgttgatgatacgctcctgatatggaataaaagttgggctaat 19891841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 12333903 - 12334075
Alignment:
Q  32 ttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccagtag 131  Q
    |||||| ||||||| ||||||||  | |||||||||| ||||||  |||| |||| |||| | || ||||| ||||| ||||| ||||||||||| ||||    
T  12333903 ttgtttctgttagctgcagaagggttaaatgtgttgatgaaagccatggttgaaggaaatgtctttacgggttacagtgtgggaggcgctaatcctgtag 12334002  T
Q  132 tagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | ||||||||| | ||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||    
T  12334003 tggtgtctcatcttcaatttgctgacgatacgctcttgatagggaataaaagttgggctaatgttcgtgcttt 12334075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 2365392 - 2365179
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  2365392 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 2365293  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| |||||||||||||   | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  2365292 cccgtttctctatttggggctctcgattgggggcgatccgcgtcatcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 2365193  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  2365192 caaagtcggttcct 2365179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 34331841 - 34332054
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| || || ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| ||||||||||| | |||||| |    
T  34331841 tgaaagtaaactttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttgggttgcaaagtaggtaaaat 34331940  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   ||||||  | |||||||||||  | || |||||||| |||||||| ||||||||||||||||||||||||  ||||    
T  34331941 cccgtttctctatttggggctctcgattgggtgtgatccgcgtcgacttttgttttgggaacctgttgtgaatcgtattaaatctagattgtctggttgg 34332040  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  34332041 caaagtcggttcct 34332054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 421
Target Start/End: Original strand, 19919255 - 19919465
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| || || || || ||||| ||||| ||||||||||  || |||||||| ||||||||||||||| |||| || ||| | |||||| |    
T  19919255 tgaaagttaattttcacaagagttcactggtaggggttaatattaatgagtcgtggctgtcagaagcggcttctgtgttggggtgtaaagtaggtaaaat 19919354  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||| ||||  | | |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  19919355 cccgtttctctatatgggactcccgattgggggcgatccgcgtcgacttttgttttgggaacctgtggtagatcgtattaaatctagattgtctggttgg 19919454  T
Q  411 catagtcggtt 421  Q
    || ||||||||    
T  19919455 caaagtcggtt 19919465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 15313295 - 15313222
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttct 284  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  15313295 tgaaagtaaatttccataaaagccctctggttggggtcaatattaatgcctcttggttgtctgaagcggattct 15313222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 12334114 - 12334202
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaa 299  Q
    |||||||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||| | |||||||||||| |||| ||||||    
T  12334114 tgaaagttaatttccataaaagctctctggttggggtcaacattagtgtctcttggttgtctaaggcggcttctgtgttggggtgcaaa 12334202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 432
Target Start/End: Original strand, 12341371 - 12341502
Alignment:
Q  301 tgggtaaagttctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagatt 400  Q
    |||||||||||| |||||| || |||||  |   |||||||||  ||||||| ||||||||||||||||||||| ||||||||| ||| || ||||||||    
T  12341371 tgggtaaagttccgtttctatacttgggcctctcgattggaggtaatccgcgccggttattattttgggagcctattgttaatcatataaagtctagatt 12341470  T
Q  401 gtctatttggcatagtcggttcctctcctttg 432  Q
    ||||  |||||||||| ||| ||| |||||||    
T  12341471 gtctggttggcatagtaggtacctttcctttg 12341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 17077107 - 17077282
Alignment:
Q  26 ccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatc 125  Q
    |||||| ||||||| |||| |||||||||  | ||||| |||| |||||| ||||| ||| || |||  || || || || |||||||| ||||| ||||    
T  17077107 ccctttatgtttttattagaagcagaaggcttgaatgtattgatgaaagccttggttgaaacagatacctttacagggtaaagggtgggtggcgcaaatc 17077206  T
Q  126 cagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgc 201  Q
    |||| |||||| | |||||||| |||| |||||| || ||||| || || || ||||||||||||||| |||||||    
T  17077207 cagtggtagtgccacatttacagtttgctgatgatacactcttaattggaaacaaaagttgggctaatgttcgtgc 17077282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 15313441 - 15313338
Alignment:
Q  98 acgggatacagggtggggggcgctaatccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattc 197  Q
    ||||||||||||||||| ||||| ||||| || || ||||| |||||||| |||| |||||| || ||||| || || || ||||||||||||||| |||    
T  15313441 acgggatacagggtgggtggcgcaaatccggtggttgtgtcacatttacagtttgctgatgatacactcttaattggaaacaaaagttgggctaatgttc 15313342  T
Q  198 gtgc 201  Q
    ||||    
T  15313341 gtgc 15313338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 219 - 424
Target Start/End: Original strand, 13878521 - 13878726
Alignment:
Q  219 aatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttc 318  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||||| |||| ||| ||| ||| |    
T  13878521 aatttccacaaaagctctctggtgggggtgaatattaatgcctcttggttgtctgaagcagcttcggtgttgggttgcaaagtgggaaaaattccgttcc 13878620  T
Q  319 tctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcg 418  Q
    ||||||||||  ||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||  ||||||||||||    
T  13878621 tctatttgggccttccgattgggggtgatccgcgccggttattattttgggagcctgttgttaatcgtattaaaactcgattgtctggttggcatagtcg 13878720  T
Q  419 gttcct 424  Q
    ||||||    
T  13878721 gttcct 13878726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 210 - 422
Target Start/End: Complemental strand, 10530775 - 10530563
Alignment:
Q  210 ctgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaag 309  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||| |||||||||    
T  10530775 ctgaaagttaattatcataaaagctctctggtaggggtcaatattaatgcctcttggttgtctgaagcagcttctgtgttgggttacaaattgggtaaag 10530676  T
Q  310 ttctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttg 409  Q
    |   ||| |||||||||||  |||||||||  |  ||||| || || |||||||||||| | |||||||||||||| ||||||||||||||||||  |||    
T  10530675 tatcgttcctctatttgggccttctgattgacgatgatcctcgccgattattattttggaaacctgttgttaatcgaattaaatctagattgtctgcttg 10530576  T
Q  410 gcatagtcggttc 422  Q
    |||||||||||||    
T  10530575 gcatagtcggttc 10530563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 211 - 432
Target Start/End: Complemental strand, 20825414 - 20825193
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||| ||||||| |||||||||||| |||| |||||| ||||||||||    
T  20825414 tgaaagtcaattttcataaaagctctctggttggggtcaacattaatgtctcgtggttgtctgaggcggcttctgtgttggggtgcaaagtgggtaaagt 20825315  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    ||  ||||| || |||||  | | |||||||||  ||||| | ||||||||||||||||||||| ||||||| ||||| || ||||||||||||  ||||    
T  20825314 tccatttctatacttgggcctcccgattggaggtaatccgagccggttattattttgggagcctattgttaaacgtataaagtctagattgtctggttgg 20825215  T
Q  411 catagtcggttcctctcctttg 432  Q
    |||||| ||| ||| |||||||    
T  20825214 catagtaggtacctttcctttg 20825193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 41664394 - 41664607
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| || || ||||| || |||||||| ||||| ||||||||||  || ||| |||| |||||||||||| || ||||||||||| | |||||| |    
T  41664394 tgaaagtaaactttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctatgttgggttgcaaagtaggtaaaat 41664493  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     |||||||||||||||||  |   |||||| || |||||||||||  | || |||||||| |||||||| ||||||||||||||||||||||||  ||||    
T  41664494 cctgtttctctatttggggctctcgattgggggtgatccgcgtcgtcttttgttttgggaacctgttgtgaatcgtattaaatctagattgtctggttgg 41664593  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  41664594 caaagtcggttcct 41664607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 32267668 - 32267455
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  32267668 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 32267569  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| || ||||| |||||  | || |||||||| |||||||| || |||||||||||||||||||||  ||||    
T  32267568 cccgtttctctatttggggctctcgattgggggtgatccacgtcgacttttgttttgggaacctgttgtgaaccgtattaaatctagattgtctggttgg 32267469  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  32267468 caaagtcggttcct 32267455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 8300917 - 8300698
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||||||||||||||  || ||| |||| |||||||| |||||| |||| |||||| | |||||| |    
T  8300917 tgaaagttaattttcataagagttctctggtaggggtcaatattaatgattcgtggttgtcagaagcggcatctgtgttggggtgcaaagtaggtaaaat 8300818  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| |||||||| |||||  | || ||||||||  ||||||| || |||||||||||||||||| ||  ||||    
T  8300817 cccgtttctctatttggggctctcgattggcggcgatcctcgtcgacttttgttttgggaagctgttgtgaaccgtattaaatctagattggctggttgg 8300718  T
Q  411 catagtcggttcctctcctt 430  Q
    || |||||||| || |||||    
T  8300717 caaagtcggtttctttcctt 8300698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 7925500 - 7925287
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  7925500 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttgggctgcaaagtaggtaaaat 7925401  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  7925400 ctcgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 7925301  T
Q  411 catagtcggttcct 424  Q
       |||||||||||    
T  7925300 ncaagtcggttcct 7925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 13878296 - 13878474
Alignment:
Q  26 ccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatc 125  Q
    ||||| ||||| ||||||||||| ||||| || |||||| ||| |||||| |||||    ||| || | |||||||| ||||| |||||||| |||||||    
T  13878296 cccttcttgttcttgttagcagctgaaggtctgaatgtgctgatgaaagccttggttactgcagatgttttcacggggtacagtgtggggggtgctaatc 13878395  T
Q  126 cagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | ||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||| |||| |||||    
T  13878396 cggtagtggtgtcccatttacaatttgtggatgatacgctcttgatagggaagaaaagctgggcaaatgttcgcgcttt 13878474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 9923715 - 9923502
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || ||| |||| ||||| ||||||| ||  || ||| ||||  |||||||||| ||| ||||||||||| | |||||| |    
T  9923715 tgaaagttaattttcataagagttctttggtaggggttaatattactggttcgtggttgtcaaaagcggcttccgtgttgggttgcaaagtaggtaaaat 9923616  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | ||||||||| |||||  |   |||||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||  ||||||||||  ||||    
T  9923615 ccagtttctctacttggggctctcgattgggggcgatccgcgtcgattattgttttgggaacctgttgttaatcgcattaaaaatagattgtctggttgg 9923516  T
Q  411 catagtcggttcct 424  Q
    || ||||| |||||    
T  9923515 caaagtcgattcct 9923502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 20825628 - 20825453
Alignment:
Q  29 tttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccag 128  Q
    ||||||||||||||||| || |||||  | |||||||||| || | |  |||| ||||| ||| | || ||||| ||||| ||||| ||| ||||||| |    
T  20825628 tttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctg 20825529  T
Q  129 tagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | || ||||||||| | || |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  20825528 tcgtggtgtctcatcttcagtttgctgatgacacgctcttgatagggaataaaagttgggcgaatgttcgtgcttt 20825453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 17700451 - 17700389
Alignment:
Q  354 cggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagt 416  Q
    ||||||||||||||||||||| ||||||||||||| || |||||||||| |  ||||||||||    
T  17700451 cggttattattttgggagcctattgttaatcgtataaagtctagattgtttggttggcatagt 17700389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 41664261 - 41664344
Alignment:
Q  110 gtggggggcgctaatccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaat 193  Q
    |||||| |||| |||||||| || |||||||||||||| |||| |||||| |||||  | || ||||||||||| |||||||||    
T  41664261 gtggggtgcgcgaatccagtggttgtgtctcatttacagtttgctgatgatacgcttcttattgggaataaaagctgggctaat 41664344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 14345099 - 14345153
Alignment:
Q  364 tttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcg 418  Q
    ||||||| ||| |||||||||| ||||||||||||||||||  ||| ||||||||    
T  14345099 tttgggatcctattgttaatcgcattaaatctagattgtctggttgtcatagtcg 14345153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 13091549 - 13091488
Alignment:
Q  137 tctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcg 198  Q
    ||||||||||||||||||||||||||  | ||||| ||| |   ||||||||||||||||||    
T  13091549 tctcatttacaatttgttgatgacaccttgttgattggggaacgaagttgggctaatattcg 13091488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 43247455 - 43247516
Alignment:
Q  137 tctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcg 198  Q
    |||||||||||||||| |||||| || || ||| |||| || ||||||||||||||| ||||    
T  43247455 tctcatttacaatttgctgatgatactctgttgttaggtaagaaaagttgggctaatgttcg 43247516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 12135183 - 12135143
Alignment:
Q  363 ttttgggagcctgttgttaatcgtattaaatctagattgtc 403  Q
    |||||||| ||| |||| |||||||||||||||||||||||    
T  12135183 ttttgggatcctattgtgaatcgtattaaatctagattgtc 12135143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 17605360 - 17605581
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||| |||| |||||| ||||||||||    
T  17605360 tgaaagttaatttccataaaagctctctggttggggtcaacattaatgtctcttggttgtctgaggcggcttctgtgttggggtgcaaagtgggtaaagt 17605459  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||| || |||||  | | |||||||||  ||||||| || |||||||||||||||||| ||||||||||||| || ||||||||||||| ||||    
T  17605460 tccgtttctatacttgggcctcccgattggaggtaatccgcgccgtttattattttgggagcctattgttaatcgtataaagtctagattgtctagttgg 17605559  T
Q  411 catagtcggttcctctcctttg 432  Q
    |||| | ||| ||| |||||||    
T  17605560 cataataggtacctttcctttg 17605581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 21629148 - 21629369
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||| |||||| |||||||| |    
T  21629148 tgaaagttaatttccataaaagctctctggttggggtcaacattaatgcctcttggttgtctgaggcggcttctgtgttggggtgcaaagtgggtaaaat 21629247  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||| || |||||  | | |||| ||||  ||||||| ||||||||||||||||||||| |||||||| |||| || ||||||||||||  ||||    
T  21629248 tccgtttctatacttgggcctcccgattagaggtaatccgcgccggttattattttgggagcctattgttaattgtataaagtctagattgtctggttgg 21629347  T
Q  411 catagtcggttcctctcctttg 432  Q
    |||||| ||| ||| |||||||    
T  21629348 catagtaggtacctttcctttg 21629369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 18681600 - 18681813
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| | ||||| ||| ||||||||||    
T  18681600 tgaaagttaatttccataaaagctctctggttggggtcaatatcaatgcttcttggttgtctgaagcggcttctgtgttaggttgtaaagtgggtaaagt 18681699  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       |||||||||| ||||||||| |||||| || |||||||  ||| | ||||||||||| ||| | | ||||||||||||| |||||||| ||  ||||    
T  18681700 atcgtttctctatatgggtattccgattgggggtgatccgcaccgggtgttattttgggatcctatcgataatcgtattaaagctagattgactggttgg 18681799  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  18681800 catagtcggttcct 18681813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 13938832 - 13938619
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| || ||||||||||| ||||| | ||||||||| ||||||||||    
T  13938832 tgaaagtaaatttccataaaagctctctggttggtgtcaatatcaatgcttcttggttggctgaagcggctcctgtgttaggttgcaaagtgggtaaagt 13938733  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | ||| |||||||||||| ||  |||||| |||||||| || |||||||| ||||||||||| |||||||| || |||||| |||||||||||  | ||    
T  13938732 accgttcctctatttgggtctttcgattgggggcgatccacgccggttattgttttgggagccagttgttaaacgaattaaagctagattgtctggtcgg 13938633  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  13938632 catagtcggttcct 13938619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 210 - 424
Target Start/End: Original strand, 15956008 - 15956215
Alignment:
Q  210 ctgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaag 309  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||    
T  15956008 ctgaaagttaatttccataaaagctctctggtaggggtcaatattaatgcctcttggttgtcttaagcgacttctgtgttgggttgcaaactgggtaaag 15956107  T
Q  310 ttctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttg 409  Q
    |   ||| ||||||||||       |  ||| || |||||||| ||||||||||||||||| |||||||||||||| |||||| ||| |||||||  |||    
T  15956108 tgtcgttcctctatttgg-------gcctgggggtgatccgcgccggttattattttgggaacctgttgttaatcgaattaaaactatattgtctggttg 15956200  T
Q  410 gcatagtcggttcct 424  Q
    |||||||||||||||    
T  15956201 gcatagtcggttcct 15956215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 17576743 - 17576964
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||| | | ||| ||||||| ||||||||| || |||| |||||| ||||||||||    
T  17576743 tgaaagtcaattttcataaaagctctctggttggggtcaacattaatgtcccgtggttgtctgaggcggcttctttgttggggtgcaaagtgggtaaagt 17576842  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||| || |||||  | | |||||||||  ||||| | ||||||||||||||||||||| ||||||| ||||| || ||||||||||||  ||||    
T  17576843 tccgtttctatacttgggcctcccgattggaggtaatccgagccggttattattttgggagcctattgttaaacgtataaagtctagattgtctggttgg 17576942  T
Q  411 catagtcggttcctctcctttg 432  Q
    |||||| ||| ||| |||||||    
T  17576943 catagtaggtacctttcctttg 17576964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 17605149 - 17605321
Alignment:
Q  32 ttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccagtag 131  Q
    |||||||||||||| ||||||||  | |||||||||| ||||||  |||| ||||||||| | || ||||| ||||| ||||| ||||||||||| ||||    
T  17605149 ttgtttttgttagctgcagaagggttaaatgtgttgatgaaagccatggttgaagcaaatgtctttacgggttacagtgtgggaggcgctaatccggtag 17605248  T
Q  132 tagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | ||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||    
T  17605249 tggtgtctcatcttcaatttgctgatgatacgctcttgatagggaataaaagttgggctaatgttcgtacttt 17605321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 24766450 - 24766663
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| || |||||||| || |||||||| ||||| ||||||||||  || ||| | || |||||||||||| || ||||||||||| | |||||| |    
T  24766450 tgaaagtaaacttccataagagttctctggtaggggttaatattaatgattcgtggttttcagaagcggcttctatgttgggttgcaaagtaggtaaaat 24766549  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |  ||||||| || ||||||||| | ||||| |||||||| ||||||||||||||||||||| |||||||||||  ||||    
T  24766550 cccgtttctctatttggggctcttgattgggggtgatccgcgttgattattgttttgggaacctgttgttaatcgtattaaaactagattgtctggttgg 24766649  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  24766650 caaagtcggttcct 24766663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 21628937 - 21629109
Alignment:
Q  32 ttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccagtag 131  Q
    |||||||||||||| ||||||||  | ||| | |||| ||||||| |||| ||||||||| | || ||||| ||||| ||||| ||||||||| | ||||    
T  21628937 ttgtttttgttagctgcagaagggttaaatatcttgatgaaagctatggttgaagcaaatgtctttacgggttacagtgtgggaggcgctaattctgtag 21629036  T
Q  132 tagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | ||||||||| | ||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||    
T  21629037 tggtgtctcatcttcaatttgctgacgatacgctcttgatagggaataaaagttgggctaatgttcgtgcttt 21629109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 2554718 - 2554506
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| || || ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| ||||||||||| | |||||| |    
T  2554718 tgaaagtaaactttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttgggttgcaaagtaggtaaaat 2554619  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
      ||||||||||||||||  |   |||| | || |||||||||||  | || |||||||| |||||||| ||||||||||||||||||||||||  |||     
T  2554618 cttgtttctctatttggggctctcgattaggggtgatccgcgtcgact-ttgttttgggaacctgttgtgaatcgtattaaatctagattgtctggttga 2554520  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  2554519 caaagtcggttcct 2554506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 17576529 - 17576704
Alignment:
Q  29 tttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccag 128  Q
    ||||||||||||||||| || |||||  | |||||||||| || | |  |||| ||||| ||| | || ||||| ||||| ||||| ||| ||||||| |    
T  17576529 tttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctg 17576628  T
Q  129 tagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | || ||||||||| | || |||| |||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  17576629 tcgtggtgtctcatcttcagtttgctgatgacacgctcttgatagggaataaaagttgggagaatgttcgtgcttt 17576704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 15955793 - 15955959
Alignment:
Q  27 cctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatcc 126  Q
    ||||||||||||| ||||||| ||||||  | ||||| |||| |||| |  |||| |||||||||||||| ||||| | |   ||||||||||||||| |    
T  15955793 cctttttgtttttattagcagtagaagggttgaatgttttgatgaaaacaatggttgaagcaaatatatttacggggtgctctgtggggggcgctaattc 15955892  T
Q  127 agtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaat 193  Q
    ||| |  ||||||||| | || |||| |||||| |||||| | || ||||| ||||| |||||||||    
T  15955893 agtggctgtgtctcatcttcagtttgctgatgatacgctcctaattgggaagaaaagctgggctaat 15955959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 2554932 - 2554768
Alignment:
Q  29 tttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccag 128  Q
    ||||| ||||| || |||||||||||  | |||||||||| | |||| ||||| || |||  | | || ||||| || || |||||| |||| | |||||    
T  2554932 tttttttttttattggcagcagaaggtttgaatgtgttgatgcaagcgttggtagacgcaggtttgtttacggggtatagagtggggcgcgcgactccag 2554833  T
Q  129 tagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaat 193  Q
    | || |||||||||||||| |||| |||||| |||||  | || |||||||||||||||||||||    
T  2554832 tggttgtgtctcatttacagtttgctgatgatacgcttcttattgggaataaaagttgggctaat 2554768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 13939058 - 13938994
Alignment:
Q  18 cctctatcccctttt-tgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggt 81  Q
    |||||||| |||||| ||||||| || ||||||||||| || ||||| |||| ||||||||||||    
T  13939058 cctctatcgccttttctgtttttattggcagcagaaggcctgaatgtattgatgaaagctttggt 13938994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 430
Target Start/End: Complemental strand, 18589282 - 18589230
Alignment:
Q  378 gttaatcgtattaaatctagattgtctatttggcatagtcggttcctctcctt 430  Q
    ||||| ||||| |||||||||||||||  |||||| ||| |||||||||||||    
T  18589282 gttaaccgtataaaatctagattgtctggttggcaaagttggttcctctcctt 18589230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 219 - 424
Target Start/End: Complemental strand, 27796589 - 27796385
Alignment:
Q  219 aatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttc 318  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||| ||||||||| ||||||||||| |||| ||| ||  ||| |    
T  27796589 aatttccataaaagctctctggtgggggtgaatactaatgcctcttggttgtctgaagcagcttctgtgttgggttgcaaagtgggaaaaatttcgttcc 27796490  T
Q  319 tctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcg 418  Q
    ||||||||||  ||| |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  27796489 tctatttgggccttccgattgg-ggtgatccgcgccggttattattttgggagcctgttgttaatcgtattaaaactagattgtctggttggcatagtcg 27796391  T
Q  419 gttcct 424  Q
    ||||||    
T  27796390 gttcct 27796385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 432
Target Start/End: Original strand, 33385007 - 33385220
Alignment:
Q  219 aatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttc 318  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||| |||| |||||| ||||||||||||||||||    
T  33385007 aatttccataaaagctctctgattggggtcaatattaatgtctcttggttgtctgaggcggcttctgtgttggggtgcaaagtgggtaaagttctgtttc 33385106  T
Q  319 tctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcg 418  Q
    |||| |||||  |||  || |||||  ||||| | ||||||||||||||||||||| ||||||||||||| || ||||||||||||  |||||||||| |    
T  33385107 tctacttgggccttccaataggaggtaatccgagccggttattattttgggagcctattgttaatcgtataaagtctagattgtctggttggcatagtag 33385206  T
Q  419 gttcctctcctttg 432  Q
    || ||| |||||||    
T  33385207 gtacctttcctttg 33385220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 33170772 - 33170559
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| ||||||||||||||||||||||||||  ||||||| ||||| |||||| || ||| ||||||||||||| | ||||||||| ||||||||||    
T  33170772 tgaaagtaaatttccataaaagctctctggttggtatcaatatcaatgcttcttggttggctggagcggcttctgtgttaggttgcaaagtgggtaaagt 33170673  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     |  || |||||||||||| ||| |||||| ||||||||||| |||||||| |||||||||||  ||||||| || |||||| |||||||||||  ||||    
T  33170672 accattcctctatttgggtcttccgattgggggcgatccgcgccggttattgttttgggagccaattgttaaacgaattaaagctagattgtctggttgg 33170573  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  33170572 catagtcggttcct 33170559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 25856465 - 25856686
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| ||||||| ||||| |||||| |||| |||||| ||||||||||    
T  25856465 tgaaagttaattttcataaaagctctctggttggggtcaacattaatgtctcgtggttgtctgaggcggcctctgtgttggggtgcaaagtgggtaaagt 25856564  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||| || |||||  | | |||||||||  ||||| | ||||||||||||||||||||| ||||||| ||||| || ||||||||||||  ||||    
T  25856565 tccgtttctatacttgggcctcccgattggaggtaatccgagccggttattattttgggagcctattgttaaacgtataaagtctagattgtctggttgg 25856664  T
Q  411 catagtcggttcctctcctttg 432  Q
    |||||| ||| ||| |||||||    
T  25856665 catagtaggtacctttcctttg 25856686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 210 - 396
Target Start/End: Original strand, 27165120 - 27165305
Alignment:
Q  210 ctgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaag 309  Q
    |||||||| || ||||||||||  ||| |||||||| ||||||| |||||||||||| ||| | ||||||||| |||| ||||||||||| |||||||||    
T  27165120 ctgaaagtcaacttccataaaat-tctttggttgggatcaatataaatgcctcttggttgtattaagcggcttatgtgttgggttgcaaagtgggtaaag 27165218  T
Q  310 ttctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatcta 396  Q
    |   ||| |||||||||||  | | |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  27165219 tgtcgttcctctatttgggcctcccgattgggggcgatccgcgtcggttattattttgggagcatgttgttaatcgaattaaatcta 27165305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 42514834 - 42514621
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| |||||| |||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  42514834 tgaaagttaattttcataagagttctctggtaggggttaatatttatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 42514735  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  42514734 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 42514635  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  42514634 caaagtcggttcct 42514621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 28534702 - 28534915
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    |||||||||| || ||||| || ||| |||| ||||  ||||||| ||  || ||| |||| ||||||||||| ||| ||||||||||| | |||||| |    
T  28534702 tgaaagttaactttcataagagttctttggtaggggataatattactggttcgtggttgtcagaagcggcttccgtgttgggttgcaaagtaggtaaaat 28534801  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||  |||||||||   ||||    
T  28534802 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgattattgttttgggaacctgttgttaatcgtattaaaaatagattgtcaggttgg 28534901  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  28534902 caaagtcggttcct 28534915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 30731340 - 30731553
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| || || || || ||||| ||||| ||||||||||  ||  ||||||| ||||||||||||||| |||| |||||| | |||||| |    
T  30731340 tgaaagttaattttcacaagagttcactggtaggggttaatattaatgattcgcggctgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 30731439  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  30731440 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgacttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 30731539  T
Q  411 catagtcggttcct 424  Q
     | |||||||||||    
T  30731540 aaaagtcggttcct 30731553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 33384815 - 33384960
Alignment:
Q  59 aatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccagtagtagtgtctcatttacaatttgttgatg 158  Q
    |||||||||| ||||||  |||| ||||||| | | || || || ||||| ||||| ||||||||||||||||| ||||||||| | ||||||| |||||    
T  33384815 aatgtgttgatgaaagccatggttgaagcaagtgtctttacaggttacagtgtgggaggcgctaatccagtagtggtgtctcatcttcaatttgctgatg 33384914  T
Q  159 acacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | | ||| ||||||| ||||||||||||||||||| || |||||||    
T  33384915 atatgcttttgatagagaataaaagttgggctaatgtttgtgcttt 33384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 25856251 - 25856426
Alignment:
Q  29 tttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccag 128  Q
    ||||||||||||||||| || |||||  | |||||||||| || | |  |||| ||||| ||| | || ||||| ||||| ||||| ||| ||||||| |    
T  25856251 tttttgtttttgttagctgctgaagggttaaatgtgttgatgacatccatggttgaagccaatgtctttacgggttacagtgtgggtggcactaatcctg 25856350  T
Q  129 tagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    | || ||||||||| | || |||| |||||||| ||||||| ||||||||||||||||||| ||| ||||||||||    
T  25856351 tcgtggtgtctcatcttcagtttgctgatgacatgctcttggtagggaataaaagttgggcaaatgttcgtgcttt 25856426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 23239495 - 23239284
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    |||||||||| || ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | | |||| |    
T  23239495 tgaaagttaactttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtagttaaaat 23239396  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   ||  || || ||||| |||||  | || |||||||| |||||||| ||||||| ||||||||||||||||  ||||    
T  23239395 cccgtttctctatttggggctctcga--gggggtgatccacgtcgacttttgttttgggaacctgttgtgaatcgtactaaatctagattgtctggttgg 23239298  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  23239297 caaagtcggttcct 23239284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 27796730 - 27796636
Alignment:
Q  110 gtggggggcgctaatccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    |||||||| |||||||| | ||| ||||| |||||||||||||  ||||| ||||||||||||||||| ||||||||||| ||| |||| |||||    
T  27796730 gtggggggtgctaatccggcagtggtgtcccatttacaatttgcagatgatacgctcttgatagggaagaaaagttgggcaaatgttcgcgcttt 27796636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 432
Target Start/End: Original strand, 8299333 - 8299430
Alignment:
Q  335 gattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcctctcctttg 432  Q
    |||||||||  ||||| | ||||||||||||||| ||||| ||||||| ||||| || ||||||||||||  |||||||||| ||| ||| |||||||    
T  8299333 gattggaggtaatccgagccggttattattttggaagcctattgttaaacgtataaagtctagattgtctggttggcatagtaggtacctttcctttg 8299430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 27164895 - 27165079
Alignment:
Q  18 cctctatc-ccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggg 116  Q
    |||||||| |||||||||||||| || ||| || ||||  | ||||| |||| |||||| ||||| || |||||||| || |  || | ||| ||| | |    
T  27164895 cctctatctccctttttgtttttattggcaacataaggcttgaatgttttgatgaaagccttggttgaggcaaatatctttaatgggtgcagtgtgagtg 27164994  T
Q  117 gcgctaatccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgc 201  Q
    |||| |||||| | || ||||| |||||||| |||| |||||| || ||||| |||||||||||||||| ||| ||| |||||||    
T  27164995 gcgcaaatccaattgttgtgtcacatttacagtttgctgatgatacactcttaatagggaataaaagttaggcaaatgttcgtgc 27165079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 30509201 - 30509241
Alignment:
Q  363 ttttgggagcctgttgttaatcgtattaaatctagattgtc 403  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  30509201 ttttgggatcctgtcgtgaatcgtattaaatctagattgtc 30509241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 30549544 - 30549584
Alignment:
Q  363 ttttgggagcctgttgttaatcgtattaaatctagattgtc 403  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  30549544 ttttgggatcctgtcgtgaatcgtattaaatctagattgtc 30549584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 30731126 - 30731290
Alignment:
Q  29 tttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaatccag 128  Q
    ||||| ||||| || |||||| ||||  | |||||||||| |||||| ||||| ||  || || |||| ||||| || || |||||| | |  ||| |||    
T  30731126 tttttatttttattggcagcaaaaggtttgaatgtgttgatgaaagcgttggtagacacagatctatttacggggtatagagtggggagagagaattcag 30731225  T
Q  129 tagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaat 193  Q
    | || ||||| |||||||| |||| |||||| |||||  | || ||||| |||||||||||||||    
T  30731226 tggttgtgtcacatttacagtttgctgatgatacgcttcttattgggaacaaaagttgggctaat 30731290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 38358799 - 38358743
Alignment:
Q  25 cccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggt 81  Q
    |||||||||||||||| |||| || |||||||||||| | |||| ||||||| ||||    
T  38358799 cccctttttgtttttgctagcggctgaaggactcaatattttgatgaaagctatggt 38358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 33515219 - 33515432
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| |||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||| ||||||| || ||||||||||| |||||||| |    
T  33515219 tgaaagtaaatttccataaaagctctctagtgggggtgaatattaatgcctcttggttgtctgaagaggcttctatgttgggttgcaaagtgggtaaaat 33515318  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    |  |||||||||||||||  ||| |||||| || ||||| || ||||||||||||||||||| || |||||||||||| |||||||||||||||  ||||    
T  33515319 ttcgtttctctatttgggccttccgattgggggtgatccacgccggttattattttgggagcatgctgttaatcgtataaaatctagattgtctggttgg 33515418  T
Q  411 catagtcggttcct 424  Q
    ||||||||||||||    
T  33515419 catagtcggttcct 33515432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 33514993 - 33515180
Alignment:
Q  18 cctctatc-ccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggg 116  Q
    |||||||| ||||| ||||| || |||||||| ||||| || ||||| |||| |||||| ||||| || |||||| | |||||||| ||||| |||||||    
T  33514993 cctctatctcccttcttgttcttcttagcagctgaaggtctgaatgtcttgatgaaagccttggttgatgcaaatgttttcacgggttacagtgtggggg 33515092  T
Q  117 gcgctaatccagtagtagtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgcttt 204  Q
    ||| |||||||||||| |||||||||||||||||||  |||||||||||| ||| |||||| ||||||||||||||| ||||||||||    
T  33515093 gcgataatccagtagtggtgtctcatttacaatttgcggatgacacgctcctgacagggaagaaaagttgggctaatgttcgtgcttt 33515180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 243 - 432
Target Start/End: Complemental strand, 28253811 - 28253622
Alignment:
Q  243 ggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagttctgtttctctatttgggtattctgattggag 342  Q
    ||||| ||||||||||| |||||| || ||||||||||||  ||| ||||||| ||| |||||| |||   |||||||||||||||  ||| |||||| |    
T  28253811 ggggttaatattaatgcttcttggttgactgaagcggctttagtgttgggttgtaaattgggtacagtgtcgtttctctatttgggccttccgattgggg 28253712  T
Q  343 gcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcctctcctttg 432  Q
    | ||  | |||||||||||||||||| | |||||||||||||| |||||||||||| |||||  ||| | ||||||||| ||||| ||||    
T  28253711 gtgactctcgtcggttattattttggaaacctgttgttaatcgaattaaatctagactgtctggttgtcgtagtcggtttctctcttttg 28253622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 353 - 432
Target Start/End: Complemental strand, 12646522 - 12646443
Alignment:
Q  353 tcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcctctcctttg 432  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  12646522 tcggctattattttgggagtctgttgttaatcgtattaaatctagattgtcaagttggcatagtcggttcctctcctttg 12646443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 2206983 - 2207069
Alignment:
Q  346 atccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcctctcctttg 432  Q
    |||||||||| || |  |||||||||||||| ||| | ||||||||||||||| |||| | |||||| |||||||| || |||||||    
T  2206983 atccgcgtcgcttgtctttttgggagcctgtggttcaccgtattaaatctagactgtccagttggcaaagtcggtttctttcctttg 2207069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 9667929 - 9667991
Alignment:
Q  140 catttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgct 202  Q
    |||||| |||||| |||||| || || ||| ||||||| ||||||||||||||| ||||||||    
T  9667929 catttataatttgctgatgatactctgttgttagggaagaaaagttgggctaatgttcgtgct 9667991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 13551793 - 13551729
Alignment:
Q  146 caatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgctttacgggc 210  Q
    ||||||| |||||||||  | ||| |||| | |||||||||||||||| ||||||||||| ||||    
T  13551793 caatttgctgatgacactttgttgttaggaactaaaagttgggctaatgttcgtgctttaagggc 13551729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 6051717 - 6051504
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| |||||||| |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  6051717 tgaaagttaattttcataaaagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 6051618  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  6051617 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 6051518  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  6051517 caaagtcggttcct 6051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 35542148 - 35541929
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||||||||||||||  || ||| |||| |||||||| |||||| |||| |||||| | |||||| |    
T  35542148 tgaaagttaattttcataagagttctctggtaggggtcaatattaatgattcgtggttgtcagaagcggcatctgtgttggggtgcaaagtaggtaaaat 35542049  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| |||||||| |||||  | || |||||||| |||||||| || |||||||||| ||||||| ||  ||||    
T  35542048 cccgtttctctatttggggctctcgattggcggcgatcctcgtcgacttttgttttgggaacctgttgtgaaccgtattaaatatagattggctggttgg 35541949  T
Q  411 catagtcggttcctctcctt 430  Q
    || |||||||| || |||||    
T  35541948 caaagtcggtttctttcctt 35541929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 432
Target Start/End: Original strand, 47622103 - 47622324
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||  |||||||| ||  || | ||||| ||||||||||| |||||| ||  ||||||| |||| ||| |||| || ||| |||||| | |    
T  47622103 tgaaagttaattatcataaaagttcgttgataggggttaatattaatgcttcttggttgattgaagcgacttcagtgttgggctgtaaattgggtacaat 47622202  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
       ||| || ||||||||  ||| |||||| || || || || | ||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||    
T  47622203 gtcgttcctttatttgggccttccgattgggggtgaccctcgacagttattattttgggaacctgttgttaatcgaattaaatctagattgtctggttgg 47622302  T
Q  411 catagtcggttcctctcctttg 432  Q
    | ||||||||| ||||| ||||    
T  47622303 cgtagtcggtttctctcttttg 47622324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 39431503 - 39431445
Alignment:
Q  140 catttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcg 198  Q
    ||||||||||||| |||||| || || ||| ||||||| ||||||||||||||| ||||    
T  39431503 catttacaatttgctgatgatactctgttgttagggaagaaaagttgggctaatgttcg 39431445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 19171441 - 19171265
Alignment:
Q  25 cccctttttgtttttgttagcagcagaaggactcaatgtgttgaagaaagctttggtggaagcaaatatattcacgggatacagggtggggggcgctaat 124  Q
    ||||||||||||||| ||||||||||||||  | ||||| |||| | ||    |||| ||||   |||| || ||||| |||   |||||||||||||||    
T  19171441 cccctttttgtttttattagcagcagaagggttgaatgttttgatgcaaaaaatggttgaagttgatatctttacggggtactctgtggggggcgctaat 19171342  T
Q  125 ccagtagta-gtgtctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcgtgc 201  Q
     |||| ||| ||||||||| | ||||||| | |||| || ||| | || ||||| ||||||||||||||| |||||||    
T  19171341 tcagt-gtatgtgtctcatattcaatttgcttatgatacactcctcattgggaagaaaagttgggctaatgttcgtgc 19171265  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 20796880 - 20796819
Alignment:
Q  137 tctcatttacaatttgttgatgacacgctcttgatagggaataaaagttgggctaatattcg 198  Q
    ||||||||| ||||||||||||| || || ||| ||||||| ||||| ||||||||| ||||    
T  20796880 tctcatttataatttgttgatgatactctgttgttagggaagaaaagctgggctaatgttcg 20796819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 39431249 - 39431184
Alignment:
Q  362 attttgggagcctgttgttaatcgtattaaatctagattgtctatttggcatagtcggttcctctc 427  Q
    ||||||||| |||||||| ||| | |||||||||||||||||   |||| |||||||||| |||||    
T  39431249 attttgggaccctgttgtgaatagaattaaatctagattgtcaggttggaatagtcggtttctctc 39431184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 104869 - 105082
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  104869 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 104968  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  104969 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 105068  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  105069 caaagtcggttcct 105082  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 4937154 - 4937367
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||| ||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  4937154 tgaaagttaattttcataagagttctctggtaggggttaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 4937253  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| ||||||||||||||  | || |||||||| ||||| ||  |||||||||||||||||||||||  ||||    
T  4937254 cccgtttctctatttggggctctcgattgggggcgatccgcgtcgtcttttgttttgggaacctgtggtggatcgtattaaatctagattgtctggttgg 4937353  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  4937354 caaagtcggttcct 4937367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 29969088 - 29968869
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || |||||||| ||||||||||||||||  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  29969088 tgaaagttaattttcataagagttctctggtaggggtcaatattaatgattcgtggttgtcagaagcggcttctgtgttggggtgcaaagtaggtaaaat 29968989  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     |||||||||||||||||  |   |||||| || | ||| |||||  | || |||||||| |||||||| || |||||||||||||||||| ||  ||||    
T  29968988 cctgtttctctatttggggctctcgattgggggtggtccacgtcgacttttgttttgggaacctgttgtgaaccgtattaaatctagattggctggttgg 29968889  T
Q  411 catagtcggttcctctcctt 430  Q
    || ||||||||||| |||||    
T  29968888 caaagtcggttcctttcctt 29968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 17721749 - 17721536
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||| ||||| || ||| |||| ||||| ||||||| ||  || ||| |||| ||||||||||| ||| ||||||||||| | |||||| |    
T  17721749 tgaaagttaattttcataagagttctttggtaggggttaatattactggttcgtggttgtcagaagcggcttccgtgttgggttgcaaagtaggtaaaat 17721650  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
     | |||||||||||||||  |   |||||| || ||||||||||| ||||| |||||||| |||||||||||||| ||||||  ||||||||||  ||||    
T  17721649 cccgtttctctatttggggctctcgattgggggtgatccgcgtcgattattgttttgggaacctgttgttaatcgcattaaaaatagattgtctggttgg 17721550  T
Q  411 catagtcggttcct 424  Q
    || |||||||||||    
T  17721549 caaagtcggttcct 17721536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 430
Target Start/End: Complemental strand, 4366 - 4147
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||||||||||||||| || |||||||| ||||| |||||||| |  || ||| |||| ||||||||||||||| |||| |||||| | |||||| |    
T  4366 tgaaagttaatttccataagagttctctggtaggggttaatattaacgattcgtggttgtcggaagcggcttctgtgttggggtgcaaagtaggtaaaat 4267  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatccgcgtcggttattattttgggagcctgttgttaatcgtattaaatctagattgtctatttgg 410  Q
    || |||||||||||||||  |   |||||| || ||||| |||||  | || |||||||| |||||||| || |||||||||||||| ||||||  || |    
T  4266 tccgtttctctatttggggctctcgattgggggtgatccacgtcgacttttgttttgggaacctgttgtgaaccgtattaaatctaggttgtctggttcg 4167  T
Q  411 catagtcggttcctctcctt 430  Q
    || ||| ||||||| |||||    
T  4166 caaagttggttcctttcctt 4147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 211 - 348
Target Start/End: Complemental strand, 722 - 585
Alignment:
Q  211 tgaaagttaatttccataaaagctctctggttggggtcaatattaatgcctcttggctgtctgaagcggcttctgtgctgggttgcaaaatgggtaaagt 310  Q
    ||||||| ||||||||||||||||||| |||||| |||||||| ||||| |||||| || ||||| | |||| |||| | ||||||||| || |||||||    
T  722 tgaaagtaaatttccataaaagctctcgggttggtgtcaatatcaatgcttcttggttggctgaaacagcttttgtgttaggttgcaaagtgcgtaaagt 623  T
Q  311 tctgtttctctatttgggtattctgattggaggcgatc 348  Q
       ||| |||||||||||| ||| |||||| |||||||    
T  622 gtcgttcctctatttgggtcttccgattgggggcgatc 585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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