View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_16 (Length: 405)
Name: NF3554_low_16
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 12606811 - 12606432
Alignment:
| Q |
18 |
aatcaaaagggtctgatcgaaaaatcttgagtttatcagaatcagctgaaatcccattgaatggattttctcctgcataaccaaagcagaacaatatcaa |
117 |
Q |
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| T |
12606811 |
aatcaaaagggtctgatcgaaaaatcttgagtttatcagaatcagctgaaatcccattgaatggattttctcctgcataaccaaagcagaacaatatcaa |
12606712 |
T |
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| Q |
118 |
cggtatgttcgattgtcccaat----------cgattgataagaatattgagatatgcagtgatgagagttcgaattctccacttattttcttaagatga |
207 |
Q |
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| T |
12606711 |
cggtctgttcgattgtcccaatgatcttaactcaattgataagaatattgagatatgcagtgatcagagttcgaat-cacgaattctccacttat--tga |
12606615 |
T |
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| Q |
208 |
atttgacaaaataaaaaagcaattaatgacataatatgtaccatattgttgaatggatgcatgaacggtatagcctctttgaagaagtctttgaacaagg |
307 |
Q |
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| T |
12606614 |
atttgacaaaataaaaaagcaattaataacataatatgtaccatattgttgaatggatgcatgaacggtatagcctctttgaagaagtctttgaacaagg |
12606515 |
T |
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| Q |
308 |
ctaaagcctaattgacctgaagcatccatgacacaaacagtgtgactagtaatgtcaaaagaaggtgccatattcgtttgtgt |
390 |
Q |
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| T |
12606514 |
ctaaagcctaattgacctgaagcatccatgacacaaacagtgtgactagtaatgtcaaaagaaggtgccatattcgtttgtgt |
12606432 |
T |
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