View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_18 (Length: 383)
Name: NF3554_low_18
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 31041757 - 31041402
Alignment:
| Q |
15 |
aatatttttcctataaagacgtagattagaacgttattagttcgtgatttagagtctgaaacattggactcttctacttatacttcagagttccaacttg |
114 |
Q |
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| T |
31041757 |
aatatttttccaataaagacgtagattagaacgttattagttcgtgatttagagtctgaaacattgcactcttctacttatacttcagagttccaacttg |
31041658 |
T |
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| Q |
115 |
cttgtcatggctgtaccgcagtcagtgccaccattgatagatcacaaagcacatttcattgtccgacattagcgataaggttactaagaatagatgaaag |
214 |
Q |
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| T |
31041657 |
cttgtcatggctgtaccgcggtcagtgccaccattgatagatcacaaagcacatttcattgtccgacattagcgataaggttactaagaatagatgaaag |
31041558 |
T |
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| Q |
215 |
tcacataggttcatcaagtttaacaagaaaattaacctaagaatagattttcaatttcattgtcttacatcaacaagaagcacatttcgttgatgaacct |
314 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31041557 |
tcacataggttcatcaggtttaacaagaaaattaacctaagaatagattttcaatttcattgtcttacatcaacaagaagcgcatttcgttgatgaacct |
31041458 |
T |
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| Q |
315 |
atgtgctaagttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcat |
372 |
Q |
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| T |
31041457 |
atgtgct--cttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcat |
31041402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 31067548 - 31067418
Alignment:
| Q |
77 |
attggactcttctacttatacttcagagttccaacttgcttgtcatggctgtaccgcagtcagtgccaccattgatagatcacaaagcacatttcattgt |
176 |
Q |
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| T |
31067548 |
attgaactcttctacttaaagttcagagttccaacttgcttgtcatggctgtacggcactcagagccaccattgacagatcacaaagcacatttcattgt |
31067449 |
T |
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| Q |
177 |
ccgacattagcgataaggttactaagaatagat |
209 |
Q |
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| T |
31067448 |
-tgacattagcaataa-gttgctaagaatagat |
31067418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 31067412 - 31067323
Alignment:
| Q |
286 |
aacaagaagcacatttcgttgatgaacctatgtgctaagttccaacttgcttgtcataggttcatcaaatttcaaagcacatttcatctcag |
377 |
Q |
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| T |
31067412 |
aacaagaagtacattttattgatgaacctatgcgctc--ttccaatttgcttgtcataggttcctcaaatttcaaagcacatttcatttcag |
31067323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 1998331 - 1998389
Alignment:
| Q |
148 |
ttgatagatcacaaagcacatttcattgtccgacattagcgataaggttactaagaata |
206 |
Q |
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| T |
1998331 |
ttgatagatcacaaaaaacatttcattgtccgacattagccataaggtttctaagaata |
1998389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 1998187 - 1998264
Alignment:
| Q |
25 |
ctataaagacgtagattagaacgttattagttcgtgatttagagtctgaaa-cattggactcttctacttatacttca |
101 |
Q |
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| T |
1998187 |
ctataaagatatagaatataaggttactagttcgtgatttagagtcttaaaacattggactcttctacttaaacttca |
1998264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 31068564 - 31068516
Alignment:
| Q |
18 |
atttttcctataaagacgtagattagaacgttattagttcgtgatttag |
66 |
Q |
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||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
31068564 |
atttttcctataaagacgtagattagaacatcattagtttgtgatttag |
31068516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 377
Target Start/End: Original strand, 31098525 - 31098560
Alignment:
| Q |
342 |
taggttcatcaaatttcaaagcacatttcatctcag |
377 |
Q |
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| T |
31098525 |
taggttcatcaaatttcaaagcacatttcatttcag |
31098560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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