View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_19 (Length: 351)
Name: NF3554_low_19
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 11038266 - 11038079
Alignment:
| Q |
1 |
gcaaagtcaggatcctactgatacaagaagatctgacattgacatagaaagatccagcatcacatgactgcatcacatggctttacatgataacaataat |
100 |
Q |
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| T |
11038266 |
gcaaagtcaggatcctactgatacaagaagatctgacattgacatagaaagatccagcatcacatgactgcatcacatggctttacatgataacaataat |
11038167 |
T |
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| Q |
101 |
aacttccctcaattgtcacatgcaactatatgctccgtcttgtgacatgcaatcatttttattataaaatttagttcaatatcattga |
188 |
Q |
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| T |
11038166 |
aacttccctcaattgtcacatgcaactatatgctccgtcttgtcacatgcaatcatttttattataaaatttagttcaatatcattga |
11038079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 335
Target Start/End: Complemental strand, 11038057 - 11037941
Alignment:
| Q |
216 |
gtcgattagcatagcggctggagaaattcaacttaaaagtgaattagtaaagatgcaaggggttcaaactccaaaatctgtatatattatgcattatact |
315 |
Q |
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| T |
11038057 |
gtcgattagcatagcagtcggagaaattcaacttaaa---gaattagtaagcatgtaaggggtttaaactccaaaatctgtatatattatgcattatact |
11037961 |
T |
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| Q |
316 |
ttactaattaagttaagttc |
335 |
Q |
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||||| ||| |||||||||| |
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| T |
11037960 |
ttacttattgagttaagttc |
11037941 |
T |
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