View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_low_2 (Length: 675)

Name: NF3554_low_2
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_low_2
NF3554_low_2
[»] chr3 (8 HSPs)
chr3 (15-551)||(24511994-24512540)
chr3 (507-551)||(53344017-53344061)
chr3 (509-552)||(3584004-3584047)
chr3 (506-552)||(24515016-24515062)
chr3 (509-551)||(47571196-47571238)
chr3 (509-551)||(49349676-49349718)
chr3 (509-551)||(52924439-52924481)
chr3 (506-551)||(15287567-15287612)
[»] chr7 (16 HSPs)
chr7 (15-362)||(2888522-2888871)
chr7 (358-551)||(28007157-28007357)
chr7 (358-493)||(20568024-20568167)
chr7 (275-341)||(20567920-20567986)
chr7 (288-338)||(28007397-28007447)
chr7 (506-552)||(28007816-28007862)
chr7 (509-551)||(35892309-35892351)
chr7 (506-552)||(36611497-36611543)
chr7 (506-552)||(41358310-41358356)
chr7 (509-551)||(44120358-44120400)
chr7 (506-551)||(3849597-3849642)
chr7 (506-551)||(41965780-41965825)
chr7 (507-551)||(767136-767180)
chr7 (509-549)||(8754175-8754215)
chr7 (509-553)||(35891471-35891515)
chr7 (503-551)||(46491688-46491736)
[»] chr2 (12 HSPs)
chr2 (128-542)||(29387844-29388270)
chr2 (485-551)||(30201969-30202036)
chr2 (55-129)||(7754691-7754765)
chr2 (506-541)||(4716123-4716158)
chr2 (575-618)||(19429426-19429469)
chr2 (506-552)||(1141299-1141345)
chr2 (507-553)||(18537497-18537543)
chr2 (509-551)||(44987545-44987587)
chr2 (506-551)||(7754970-7755015)
chr2 (625-658)||(19436593-19436626)
chr2 (506-551)||(29387424-29387469)
chr2 (23-75)||(29387754-29387806)
[»] chr4 (12 HSPs)
chr4 (552-660)||(23883650-23883754)
chr4 (424-551)||(35605991-35606117)
chr4 (506-551)||(25725811-25725856)
chr4 (506-550)||(53777822-53777866)
chr4 (512-552)||(56226461-56226501)
chr4 (625-656)||(17539038-17539069)
chr4 (509-552)||(24666128-24666171)
chr4 (509-551)||(14527582-14527624)
chr4 (275-341)||(35606200-35606266)
chr4 (495-552)||(36248398-36248455)
chr4 (507-551)||(34450815-34450859)
chr4 (509-549)||(38519193-38519233)
[»] chr1 (6 HSPs)
chr1 (552-656)||(24983341-24983440)
chr1 (509-551)||(26240114-26240156)
chr1 (55-129)||(43552724-43552798)
chr1 (506-552)||(50657144-50657190)
chr1 (506-551)||(12449315-12449360)
chr1 (506-551)||(26240874-26240919)
[»] chr5 (12 HSPs)
chr5 (577-656)||(18594248-18594326)
chr5 (407-543)||(4083573-4083708)
chr5 (506-553)||(35524880-35524927)
chr5 (275-341)||(4083422-4083488)
chr5 (502-554)||(40372159-40372211)
chr5 (506-552)||(4082992-4083038)
chr5 (509-551)||(33086729-33086771)
chr5 (509-551)||(38129126-38129168)
chr5 (506-551)||(4095112-4095156)
chr5 (506-551)||(35524122-35524167)
chr5 (509-553)||(23253492-23253536)
chr5 (509-553)||(33087472-33087516)
[»] chr8 (7 HSPs)
chr8 (506-551)||(22632971-22633016)
chr8 (506-550)||(22632323-22632367)
chr8 (513-552)||(9277792-9277831)
chr8 (507-554)||(42663274-42663321)
chr8 (509-551)||(26847727-26847769)
chr8 (506-552)||(35399946-35399992)
chr8 (509-551)||(42094009-42094051)
[»] chr6 (1 HSPs)
chr6 (506-553)||(16718997-16719044)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 551
Target Start/End: Complemental strand, 24512540 - 24511994
Alignment:
Q  15 gaaaaagcgaatctacaataaaagttgagttgagtaccattttcaaaagttcatgggttttattaagaatatagtttttgggtacaattagagatggtga 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  24512540 gaaaaagctaatctacaataaaagttgagttgagtaccattttcaaaagttcatgggttttattaagaatatagtgtttggatacaattagagatggtga 24512441  T
Q  115 ccttttaataaacatgagatatttgaattctacacactgatagaaacacattgaagaagaaattaaccaatttaatttattttacgaatgaagttgacaa 214  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||    
T  24512440 ccttttaataaacatgagttatttgaattctacacaccgaaagaaacacattgaagaagaaattaaccaatttaatttattttacaattgaagttaagaa 24512341  T
Q  215 gaataaaaggatataagtttcatgtcaaataaaagaaaaagtatgacttatgactaagatctttatgtgatatttgagggagaacggtgtatttaatttc 314  Q
    |||||||||| |||||||||  ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  24512340 gaataaaagggtataagttttctgtcaaataaaagaaaaggtatgacgtatgactaaaatctttatgtgatatttgatggagaacgatgtatttaatttc 24512241  T
Q  315 tgaaagataattcataaattcaaaggac--atattattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaat--------gc 404  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  24512240 tgaaagataattcataaattcaaaggacgtgtattattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatactgcaaaac 24512141  T
Q  405 tgcaaattaaagaggagatgagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacat 504  Q
    |||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  24512140 tgcaaattaaagaggagaggagaagaaagaaaagagatcaagttcaggaaggtgcatgataaaaactatggactcatttaatctaatggttgttagacat 24512041  T
Q  505 agtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
     ||||||||||||| |||||||||||||||||| |||| ||||||||    
T  24512040 ggtccaccggtgagggacttaattgctccctcaccctaaaatccacc 24511994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 53344061 - 53344017
Alignment:
Q  507 tccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 552
Target Start/End: Complemental strand, 3584047 - 3584004
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    |||||||||| || ||||||||||||||| ||||||||||||||    
T  3584047 caccggtgagggatttaattgctccctcaccctagaatccacca 3584004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 24515016 - 24515062
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||||||||||| ||||||||  |||||||| ||||||||||||||    
T  24515016 gtccaccggtgagggacttaataactccctcaccctagaatccacca 24515062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Original strand, 52924439 - 52924481
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  52924439 caccggtgagggacttaattgctccctcaccttagaatccacc 52924481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 15287612 - 15287567
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||    
T  15287612 gtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 2888522 - 2888871
Alignment:
Q  15 gaaaaagcgaatctacaataaaagttgagttgagtaccattttcaaaagttcatgggttttattaagaatatagtttttgggtacaattagagatggtga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||    
T  2888522 gaaaaagcgaatctacaataaaagttgagttgagtaccattttcaaaagttcataggttttattaagaatataatgtttgggtgcaattagagatggtga 2888621  T
Q  115 ccttttaataaacatgagatatttgaattctacacactgatagaaacacattgaagaagaaattaaccaatttaatttattttacgaatgaagttgacaa 214  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||    
T  2888622 ccttttaataaacatgagttatttgaattctacacaccgaaagaaacacattgaagaagaaattaaccaatttaatttattttacaagtgaagttaagaa 2888721  T
Q  215 gaataaaaggatataagtttcatgtcaaataaaagaaaaagtatgacttatgactaagatctttatgtgatatttgagggagaacggtgtatttaatttc 314  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2888722 gaataaaagggtataagtttcctgtcaaataaaagaaaaggtatgacatatgactaagatctttatgtgatatttgagggagaacgatgtatttaatttc 2888821  T
Q  315 tgaaagataattcataaattcaaaggaca--tattattgagaaacgaacg 362  Q
    |  ||||||||||||||||||||| ||||  ||||||||| ||| |||||    
T  2888822 tttaagataattcataaattcaaaagacatgtattattgaaaaatgaacg 2888871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 358 - 551
Target Start/End: Complemental strand, 28007357 - 28007157
Alignment:
Q  358 gaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatgctgca-------aattaaagaggagatgagaagatagaaaagagatcaagtgca 450  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||  ||       ||| |||||||| | ||||||| | |||||||||||||||||    
T  28007357 gaacgacaatgagatttgagaaggtgatagatgaaaacaaggaaggcaacactaaacaaatcaaagaggaaaggagaagaaataaaagagatcaagtgca 28007258  T
Q  451 ggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccggtgagagacttaattgctccctcatcctagaatccac 550  Q
     ||||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  28007257 tgaaggtgtatgataaaaactgtggactcatttaatctaatggttgttagacatggtccaccggtgagggacttaattgctccctcaccctagaatccac 28007158  T
Q  551 c 551  Q
    |    
T  28007157 c 28007157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 358 - 493
Target Start/End: Original strand, 20568024 - 20568167
Alignment:
Q  358 gaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatgctgcaa--------attaaagaggagatgagaagatagaaaagagatcaagtgc 449  Q
    |||||||||| |||||||| ||||||||||||| |||||||||| ||  |||        ||||||||||| |  |||||| ||||||||| ||||||||    
T  20568024 gaacgacaataggatttgaaaaggtgatagatgtaaacaaggaaggcatcaatagagaaaattaaagaggataaaagaagaaagaaaagaggtcaagtgc 20568123  T
Q  450 aggaaggtgcatgataaaaactatgaactcatttaatctaatgg 493  Q
    ||||||||  |||||||||||| || ||||||||||||||||||    
T  20568124 aggaaggtatatgataaaaactgtggactcatttaatctaatgg 20568167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 20567920 - 20567986
Alignment:
Q  275 ctttatgtgatatttgagggagaacggtgtatttaatttctgaaagataattcataaattcaaagga 341  Q
    |||||| ||||||||| ||||||| | |  ||||||||| | |||||||||||||||||||||||||    
T  20567920 ctttatatgatatttgggggagaaagatacatttaattttttaaagataattcataaattcaaagga 20567986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 28007447 - 28007397
Alignment:
Q  288 ttgagggagaacggtgtatttaatttctgaaagataattcataaattcaaa 338  Q
    ||||||||||||| |  ||||||||| ||||||||||||||||||||||||    
T  28007447 ttgagggagaacgatacatttaatttttgaaagataattcataaattcaaa 28007397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 28007816 - 28007862
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||||||||||| |||||||| ||||| ||| ||||||||||||||    
T  28007816 gtccaccggtgagggacttaatagctccatcaccctagaatccacca 28007862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Original strand, 35892309 - 35892351
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| || ||||||||||||||| |||||||||||||    
T  35892309 caccggtgagggatttaattgctccctcaccctagaatccacc 35892351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 36611497 - 36611543
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    |||||||||||||||| |||||||  |||||| ||||||||||||||    
T  36611497 gtccaccggtgagagatttaattgaaccctcaccctagaatccacca 36611543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 41358356 - 41358310
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||| ||||||| |||||||||| |||||||||| |||||||||||    
T  41358356 gtccatcggtgagggacttaattgatccctcatccaagaatccacca 41358310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 44120400 - 44120358
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  44120400 caccggtgagggacttaattgctccctcaccttagaatccacc 44120358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 3849642 - 3849597
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| || || |||| |||||||||||||||||||||    
T  3849642 gtccaccggtgagggatttgattgatccctcatcctagaatccacc 3849597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 41965780 - 41965825
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||    
T  41965780 gtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 767180 - 767136
Alignment:
Q  507 tccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||||| ||||||||||  |||||| |||||||||||||    
T  767180 tccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 549
Target Start/End: Complemental strand, 8754215 - 8754175
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatcca 549  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  8754215 caccggtgagagacttaattgcttcctcaccttagaatcca 8754175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 35891515 - 35891471
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccaccaa 553  Q
    ||||| |||| |||||||||||||| | |||||||||||||||||    
T  35891515 caccgatgagggacttaattgctccttaatcctagaatccaccaa 35891471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 551
Target Start/End: Original strand, 46491688 - 46491736
Alignment:
Q  503 atagtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||||||||| |||||| |||  |||||| |||||||||||||    
T  46491688 atagtccaccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 128 - 542
Target Start/End: Original strand, 29387844 - 29388270
Alignment:
Q  128 atgagatatttgaattctacacactgatagaaacacattgaagaagaaattaaccaatttaatttattttacgaatgaagttgacaagaataaaaggata 227  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| | ||||||| | |||||||||||| ||    
T  29387844 atgagttatttgaattctacacactgaaagaaacacattgaataagaaattaatcaatttaatttattttacaagtgaagttaagaagaataaaagggta 29387943  T
Q  228 taagtttcatgtcaaataaa-agaaaaagtatgacttat-gactaaga-tctttatgtgatatttgagggagaacggtgtatttaatttctgaaagataa 324  Q
    ||||||||  || | ||    | | || |  ||| |||| ||  || | ||||||||||||||||||||||||| | | ||||||| || ||||||||||    
T  29387944 taagtttcccgttagatctttatagaatgattgagttatagaacaacactctttatgtgatatttgagggagaatgatatatttaaattttgaaagataa 29388043  T
Q  325 ttcataaattcaaaggacat--attattgagaaacgaacgacaatgggatttgagaaggtgatagatgaaaacaaggaatgc--------tgcaaattaa 414  Q
    |||||||||||||| || ||  |||||| || || |||| ||||||||||||||||||||||||||| |||||||||||  |        |||||||||     
T  29388044 ttcataaattcaaatgatatgtattattaaggaatgaacaacaatgggatttgagaaggtgatagataaaaacaaggaagacagcaaaactgcaaattag 29388143  T
Q  415 agaggagatgagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccgg 514  Q
     ||||||| ||||||| |||||||||||||| | ||||||||||||||||||||| | || |||||||||||||||| ||| |||||||||||||||  |    
T  29388144 ggaggagaggagaagaaagaaaagagatcaaatacaggaaggtgcatgataaaaa-tgtggactcatttaatctaatagttgttagacatagtccactag 29388242  T
Q  515 tgagagacttaattgctccctcatccta 542  Q
    |||| |||||||||||||||||| ||||    
T  29388243 tgagggacttaattgctccctcacccta 29388270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 551
Target Start/End: Original strand, 30201969 - 30202036
Alignment:
Q  485 atctaatggt-tattagacatagtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| ||||| | || ||||||||||||| |||||||||||||||||| | |||||||||||    
T  30201969 atctaatggtatattatagatggtccaccggtgagggacttaattgctccctcaccttagaatccacc 30202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 7754765 - 7754691
Alignment:
Q  55 tttcaaaagttcatgggttttattaagaatatagtttttgggtacaattagagatggtgaccttttaataaacat 129  Q
    ||||||||||| |||||||||  ||| |||||||||| |  || ||||||||||| |||||||||||||| ||||    
T  7754765 tttcaaaagtttatgggttttgctaaaaatatagtttctaagttcaattagagatagtgaccttttaatacacat 7754691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 541
Target Start/End: Complemental strand, 4716158 - 4716123
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcct 541  Q
    |||||||||||||||||||||||| |||||||||||    
T  4716158 gtccaccggtgagagacttaattgatccctcatcct 4716123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 618
Target Start/End: Complemental strand, 19429469 - 19429426
Alignment:
Q  575 aataaaattgagcaaaaactcattattgataacaataactcttg 618  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  19429469 aataaaattgaacaaaatctcattattgataacaataaatcttg 19429426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 1141345 - 1141299
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||||||||||| ||||| |||||||||||| | ||||||||||||    
T  1141345 gtccaccggtgagggacttcattgctccctcaccttagaatccacca 1141299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 553
Target Start/End: Original strand, 18537497 - 18537543
Alignment:
Q  507 tccaccggtgagagacttaattgctccctcatcctagaatccaccaa 553  Q
    |||||||||||| ||||||||||  |||||||| |||||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccaccaa 18537543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Original strand, 44987545 - 44987587
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||| |||||||||||||||| ||||||| |||||||||||||    
T  44987545 caccagtgagagacttaattgatccctcaccctagaatccacc 44987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 7754970 - 7755015
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||  |||||||||| ||||||| |||||||||||||    
T  7754970 gtccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 658
Target Start/End: Complemental strand, 19436626 - 19436593
Alignment:
Q  625 aaatacttttgaaatatccaataattacaacaat 658  Q
    |||||||||||||||||| |||||||||||||||    
T  19436626 aaatacttttgaaatatcaaataattacaacaat 19436593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 29387469 - 29387424
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||||||  ||||||| |||||||||||||||||| ||||    
T  29387469 gtccaccggtgaggaacttaatagctccctcatcctagaattcacc 29387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 29387754 - 29387806
Alignment:
Q  23 gaatctacaataaaagttgagttgagtaccattttcaaaagttcatgggtttt 75  Q
    |||||| |||||||| ||||||||||| ||  ||||||| |||||||||||||    
T  29387754 gaatctgcaataaaaattgagttgagtgccgctttcaaaggttcatgggtttt 29387806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 552 - 660
Target Start/End: Complemental strand, 23883754 - 23883650
Alignment:
Q  552 aatggaaacggtcaagcacaataaataaaattgagcaaaaactcattattgataacaataactcttgtactataaatacttttgaaatatccaataatta 651  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  23883754 aatggaaacggtcaagcacaataaa----attgagcaaaaactcattattgataacaataactcttgaactaaaaatacttttgaaatatccaataatta 23883659  T
Q  652 caacaatat 660  Q
    |||||||||    
T  23883658 caacaatat 23883650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 424 - 551
Target Start/End: Complemental strand, 35606117 - 35605991
Alignment:
Q  424 gagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatagtccaccggtgagagact 523  Q
    ||||||| ||||||  |||||||||||| |||||| |||||||||| |  | ||||||| ||||||| |||| |||||||| |||||||  |||| ||||    
T  35606117 gagaagaaagaaaactgatcaagtgcagaaaggtgtatgataaaaattggggactcatt-aatctaaaggttgttagacatggtccaccaatgagggact 35606019  T
Q  524 taattgctccctcatcctagaatccacc 551  Q
    |||||||||||||| |||||||||||||    
T  35606018 taattgctccctcaccctagaatccacc 35605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 25725811 - 25725856
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||    
T  25725811 gtccaccggtgagggacttaattgctccctcaccctagactccacc 25725856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 550
Target Start/End: Complemental strand, 53777866 - 53777822
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccac 550  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||    
T  53777866 gtccaccggtgagagacttaattggaccctcatcctaaaatccac 53777822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 56226501 - 56226461
Alignment:
Q  512 cggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    |||||||||||||||||| ||||||||| ||||||||||||    
T  56226501 cggtgagagacttaattgatccctcatcttagaatccacca 56226461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 656
Target Start/End: Complemental strand, 17539069 - 17539038
Alignment:
Q  625 aaatacttttgaaatatccaataattacaaca 656  Q
    ||||||||||||||||||||||||||||||||    
T  17539069 aaatacttttgaaatatccaataattacaaca 17539038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 552
Target Start/End: Complemental strand, 24666171 - 24666128
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||    
T  24666171 caccggtgagggacttaattgatccctcaccctagaatccacca 24666128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Original strand, 14527582 - 14527624
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  14527582 caccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 35606266 - 35606200
Alignment:
Q  275 ctttatgtgatatttgagggagaacggtgtatttaatttctgaaagataattcataaattcaaagga 341  Q
    ||||||| || ||||||||| ||||| |  || |||||| |||||||||||||||||||| ||||||    
T  35606266 ctttatgggacatttgagggtgaacgatacatataatttttgaaagataattcataaatttaaagga 35606200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 552
Target Start/End: Complemental strand, 36248455 - 36248398
Alignment:
Q  495 tattagacatagtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||| |||| ||||||||||||| || ||||||||||||||| | |||||| |||||    
T  36248455 tattatacatggtccaccggtgagggatttaattgctccctcaccttagaattcacca 36248398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 34450859 - 34450815
Alignment:
Q  507 tccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||||| |||||||||| ||||||| |||||||| ||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 38519193 - 38519233
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatcca 549  Q
    |||||||||| |||||||||||||| ||| |||||||||||    
T  38519193 caccggtgagggacttaattgctccttcaccctagaatcca 38519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 552 - 656
Target Start/End: Original strand, 24983341 - 24983440
Alignment:
Q  552 aatggaaacggtcaagcacaataaataaaattgagcaaaaactcattattgataacaataactcttgtactataaatacttttgaaatatccaataatta 651  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  24983341 aatggaaacggtcaagcacaata----aaattgagcaaaaactcattattgataacaataaatcttgaacta-aaatacttttgaaatatccaataatta 24983435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 26240156 - 26240114
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  26240156 caccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 43552798 - 43552724
Alignment:
Q  55 tttcaaaagttcatgggttttattaagaatatagtttttgggtacaattagagatggtgaccttttaataaacat 129  Q
    ||||||||||| |||||||||  ||| |||||||||| |  || ||||||| ||| |||||||||||||| ||||    
T  43552798 tttcaaaagtttatgggttttgctaaaaatatagtttctaagttcaattagtgatagtgaccttttaatacacat 43552724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 50657144 - 50657190
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||||||||||| |||||||||||||||||  | ||||||||||||    
T  50657144 gtccaccggtgagggacttaattgctccctcgccttagaatccacca 50657190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 12449315 - 12449360
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| |||||||||| ||||||| |||| ||||||||    
T  12449315 gtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 26240874 - 26240919
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||||    
T  26240874 gtccaccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 577 - 656
Target Start/End: Complemental strand, 18594326 - 18594248
Alignment:
Q  577 taaaattgagcaaaaactcattattgataacaataactcttgtactataaatacttttgaaatatccaataattacaaca 656  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  18594326 taaaattgagcaaaaactcattattgataacaataactcttgaacta-aaatacttttgaaatatccaataattacaaca 18594248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 407 - 543
Target Start/End: Original strand, 4083573 - 4083708
Alignment:
Q  407 caaattaaagaggagatgagaagatagaaaagagatcaagtgcaggaaggtgcatgataaaaactatgaactcatttaatctaatggttattagacatag 506  Q
    ||||| |||||||||  ||||||| | ||||| |||||||||||| |||||| ||||||||| ||  | ||||||||||| ||| |||| |||||||| |    
T  4083573 caaatgaaagaggagg-gagaagaaataaaagtgatcaagtgcagaaaggtgtatgataaaatctggggactcatttaatttaaaggttgttagacatgg 4083671  T
Q  507 tccaccggtgagagacttaattgctccctcatcctag 543  Q
    ||||||| |||| |||||||||||||||||| |||||    
T  4083672 tccaccgatgagggacttaattgctccctcaccctag 4083708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 553
Target Start/End: Original strand, 35524880 - 35524927
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccaccaa 553  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  35524880 gtccaccggtgagaaacttaattgatccctcaccctagaatccaccaa 35524927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 4083422 - 4083488
Alignment:
Q  275 ctttatgtgatatttgagggagaacggtgtatttaatttctgaaagataattcataaattcaaagga 341  Q
    ||||||| || ||||||||| ||||| |  ||||||||| |||||||||||||||||||| ||||||    
T  4083422 ctttatgggacatttgagggtgaacgatacatttaatttttgaaagataattcataaatttaaagga 4083488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 554
Target Start/End: Original strand, 40372159 - 40372211
Alignment:
Q  502 catagtccaccggtgagagacttaattgctccctcatcctagaatccaccaat 554  Q
    |||||||||||||||||  |||||||||  |||||| ||||||||||||||||    
T  40372159 catagtccaccggtgaggaacttaattgaaccctcaccctagaatccaccaat 40372211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 4083038 - 4082992
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    |||||||| |||| |||||||| ||||||||| ||||||||||||||    
T  4083038 gtccaccgatgagggacttaatagctccctcaccctagaatccacca 4082992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 33086771 - 33086729
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||  |||||||||| |||||||||||||||||||||    
T  33086771 caccggtgaaggacttaattgatccctcatcctagaatccacc 33086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 38129168 - 38129126
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  38129168 caccggtgagggacttaattgctccctcaccttagaatccacc 38129126  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 4095156 - 4095112
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||    
T  4095156 gtccaccggtgagagacttaattgat-cctcaccctagaatccacc 4095112  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 35524167 - 35524122
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| ||||||||||  | ||||||||||||||||||    
T  35524167 gtccaccggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 23253492 - 23253536
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccaccaa 553  Q
    |||||||||| ||||||||||  |||||| |||||||||||||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatccaccaa 23253536  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 33087472 - 33087516
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccaccaa 553  Q
    |||||||||| ||||| |||| |||||||||||||||| ||||||    
T  33087472 caccggtgagggacttgattgatccctcatcctagaattcaccaa 33087516  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 551
Target Start/End: Original strand, 22632971 - 22633016
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||    
T  22632971 gtccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 550
Target Start/End: Complemental strand, 22632367 - 22632323
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccac 550  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||    
T  22632367 gtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 552
Target Start/End: Original strand, 9277792 - 9277831
Alignment:
Q  513 ggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  9277792 ggtgagggacttaattgctccctcaccctagaatccacca 9277831  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 554
Target Start/End: Complemental strand, 42663321 - 42663274
Alignment:
Q  507 tccaccggtgagagacttaattgctccctcatcctagaatccaccaat 554  Q
    |||||||||||||||||||||||  | |||| ||||||||||||||||    
T  42663321 tccaccggtgagagacttaattggactctcaccctagaatccaccaat 42663274  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Original strand, 26847727 - 26847769
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    ||||||||||  ||||||||| |||||||||||||||||||||    
T  26847727 caccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 35399946 - 35399992
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccacca 552  Q
    ||||||||||||| || || |||| ||||||||||||||||||||||    
T  35399946 gtccaccggtgagggatttgattgatccctcatcctagaatccacca 35399992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 42094051 - 42094009
Alignment:
Q  509 caccggtgagagacttaattgctccctcatcctagaatccacc 551  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 553
Target Start/End: Original strand, 16718997 - 16719044
Alignment:
Q  506 gtccaccggtgagagacttaattgctccctcatcctagaatccaccaa 553  Q
    ||||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  16718997 gtccaccggtgagggacttaattgatccgtcaccctagaatccaccaa 16719044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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