View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_20 (Length: 344)
Name: NF3554_low_20
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 56185414 - 56185091
Alignment:
| Q |
1 |
acagaatgcagatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatca |
100 |
Q |
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| T |
56185414 |
acagaatgcagatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatca |
56185315 |
T |
|
| Q |
101 |
tgaagctccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56185314 |
tgaagctccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaac |
56185215 |
T |
|
| Q |
201 |
ataattatatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
56185214 |
ataattatatagatgaactaaaataaaaatattttggtttgtaaccacttgagttctaagtccttaataccttgtgtagcagataagttacatcattgat |
56185115 |
T |
|
| Q |
301 |
ttgtattacaaggtctgagggtat |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
56185114 |
ttgtattacaaggtctgagggtat |
56185091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 107 - 324
Target Start/End: Complemental strand, 31192036 - 31191819
Alignment:
| Q |
107 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataatt |
206 |
Q |
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|||||| ||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31192036 |
tccacaataaaaatctttgaatcactacaatcatagcaaagcctttggaggagtctacattttggaagaagggcaaactgcagataaaaagaaaataatt |
31191937 |
T |
|
| Q |
207 |
atatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtat |
306 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
31191936 |
gtatagatgaactaaaatcaaaatattttggtttatatccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcgttgatctgtat |
31191837 |
T |
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| Q |
307 |
tacaaggtctgagggtat |
324 |
Q |
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||||||| ||||||||| |
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| T |
31191836 |
aacaaggtatgagggtat |
31191819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 16807835 - 16808052
Alignment:
| Q |
107 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataatt |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
16807835 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctctgttggagtctacattttggaagaagggcaaactacagataaaaagaaaataatt |
16807934 |
T |
|
| Q |
207 |
atatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtat |
306 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
16807935 |
gtatagatgaactaaaatcaaaatattttggtttatatccacttgagttctaagtccttaataccttgtgtagcagataagtaacaccgttgatctgtat |
16808034 |
T |
|
| Q |
307 |
tacaaggtctgagggtat |
324 |
Q |
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|||||| ||||||||||| |
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| T |
16808035 |
tacaagatctgagggtat |
16808052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 10015538 - 10015388
Alignment:
| Q |
20 |
ttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatcatgaagctccacagtaaaac |
119 |
Q |
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||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| ||| || ||||| ||||||| |||||| | || || || |
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| T |
10015538 |
ttatgagcactaatgttgattgaaactccatagcaaaactttgcacaaagttcaaaagcctctgatccaccaggcatatcattaagctctagaggaacac |
10015439 |
T |
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| Q |
120 |
tctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttg |
170 |
Q |
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||| |||||| ||| |||| | ||||| |||||||| || || ||||||| |
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| T |
10015438 |
tcttagaatcattagtatcagaacaaagtctttgtagaaggccgcattttg |
10015388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 10021310 - 10021252
Alignment:
| Q |
13 |
tacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagtt |
71 |
Q |
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|||||| |||| |||||||||||||||||||| |||||| || ||||||||||| |||| |
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| T |
10021310 |
tacaaaattataagcactaatgttgattgaaactccatagcagaacttagcacaaagtt |
10021252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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