View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_22 (Length: 333)
Name: NF3554_low_22
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 21608128 - 21607815
Alignment:
| Q |
1 |
aacatgaccctttacattattggaatagccgcaaatatttgtccatttgtacaattggtttatctagcattacatttatttttgtcacatctattgtgtt |
100 |
Q |
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| T |
21608128 |
aacataaccctttacattattggaatagccgcaaatatttgtccatttctacaattggttgatctagcattacatttatttttgtcacatctattgtgtt |
21608029 |
T |
|
| Q |
101 |
tgagatttccctcaatttaatgtgcatattttaaatttgcactcaatttaatgtgtatggtatacattattttcttatgtattttagggtttctaggcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21608028 |
tgagatttccctcaatttaatgtgcatattttaaatttgcactcaatttaatgtgtatggta--cattattttcttatgtattttagggtttctaggcag |
21607931 |
T |
|
| Q |
201 |
cctatgtctagcggaagcagaaatataaacaaaactaagtttactaaatcccagagaaatagatctattcaattaaatattggaaaaataagccacccaa |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21607930 |
cctatgtctagctgaagcagaaatataaacaaaactaagtttactaaatcccagagaaatagatctattcaattaaatattggaaaaataagccacccaa |
21607831 |
T |
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| Q |
301 |
atcttcttgctctatt |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
21607830 |
atcttcttgctctatt |
21607815 |
T |
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