View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3554_low_23 (Length: 333)
Name: NF3554_low_23
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 2320981 - 2321286
Alignment:
| Q |
14 |
gaaagttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320981 |
gaaagttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaattt |
2321080 |
T |
|
| Q |
114 |
ggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2321081 |
ggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggagagaaggaggaagtgaaagaggaaaac |
2321180 |
T |
|
| Q |
214 |
ttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccacca-gggcattttttgttggcacacgcggtgaaagaggatgtg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
2321181 |
ttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttggcacacacggtgaaagaggatgtg |
2321280 |
T |
|
| Q |
313 |
gttttg |
318 |
Q |
| |
|
|||||| |
|
|
| T |
2321281 |
gttttg |
2321286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 2303280 - 2303584
Alignment:
| Q |
14 |
gaaagttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
2303280 |
gaaagttgagtgagaatgaaatggttaatctttgttcagagtttctgaatggtgggacggatactacttccactactttgcaatggattatggcgaattt |
2303379 |
T |
|
| Q |
114 |
ggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagac |
213 |
Q |
| |
|
||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2303380 |
ggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggagagaaggaggaagtgaaagaggaagaa |
2303479 |
T |
|
| Q |
214 |
ttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagaggatgtgg |
313 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |
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| T |
2303480 |
ttgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgccacacgcggtgaaagaggatgtgg |
2303579 |
T |
|
| Q |
314 |
ttttg |
318 |
Q |
| |
|
||||| |
|
|
| T |
2303580 |
ttttg |
2303584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 2293673 - 2293971
Alignment:
| Q |
20 |
tgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttggtgaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| | ||||| |
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|
| T |
2293673 |
tgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtagtgaa |
2293772 |
T |
|
| Q |
120 |
gtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagacttgcag |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2293773 |
gtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagacttgcag |
2293872 |
T |
|
| Q |
220 |
aaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagaggatgtggttttg |
318 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| | ||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
2293873 |
aaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgccacacgcggtgaaagaggatgtggttttg |
2293971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 2310004 - 2310302
Alignment:
| Q |
20 |
tgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttggtgaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||| ||||||| |
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|
| T |
2310004 |
tgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttggagtggattatggcgaatgtggtgaa |
2310103 |
T |
|
| Q |
120 |
gtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagacttgcag |
219 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2310104 |
gtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagacttgcag |
2310203 |
T |
|
| Q |
220 |
aaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagaggatgtggttttg |
318 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||||||||||||| | ||| | ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
2310204 |
aaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgcggtgaaagaggatgtggttttg |
2310302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 2330555 - 2330854
Alignment:
| Q |
19 |
ttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttggtga |
118 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2330555 |
ttgagtgaggatgaaatgattagtctttgttcggagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtga |
2330654 |
T |
|
| Q |
119 |
agtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagacttgca |
218 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2330655 |
agtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatgatgctggagagaaggaggaagtgaaagaggaagacttgca |
2330754 |
T |
|
| Q |
219 |
gaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagaggatgtggttttg |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||| ||||||||||||||| |
|
|
| T |
2330755 |
taaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtgagcgaggatgtggttttg |
2330854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 2326837 - 2327139
Alignment:
| Q |
16 |
aagttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttgg |
115 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||||||||||||||| | ||| || |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2326837 |
aagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcgaatttgg |
2326936 |
T |
|
| Q |
116 |
tgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagactt |
215 |
Q |
| |
|
||||||||||||| || || ||||||||||| |||||||| | ||| | |||||| |||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
2326937 |
tgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtagagaaggaggaagtgaaagaggaagactt |
2327036 |
T |
|
| Q |
216 |
gcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagaggatgtggtt |
315 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | || || |||| || ||||||||| |
|
|
| T |
2327037 |
gcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtgagcgatgatgtggtt |
2327136 |
T |
|
| Q |
316 |
ttg |
318 |
Q |
| |
|
||| |
|
|
| T |
2327137 |
ttg |
2327139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 2350861 - 2351159
Alignment:
| Q |
19 |
ttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttggtga |
118 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
2350861 |
ttgagtgaagatgaaatggttagtctttgttcagagtttttgaatgctgggatagatactacttccacggctttgcaatggattatggcaaatttggtga |
2350960 |
T |
|
| Q |
119 |
agtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatgggtagtgatgacaatggagagaaggaggaagtgaaagaggaagacttgca |
218 |
Q |
| |
|
||||||| || ||||| |||||||||||||| |||||| | |||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
2350961 |
agtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaatggagagaaggtggaagtgaaagaggaagatttgca |
2351060 |
T |
|
| Q |
219 |
gaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcattttttgttggcacacgcggtgaaagaggatgtggtttt |
317 |
Q |
| |
|
||||||| ||| |||| || |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||| |||||||||| |||| |
|
|
| T |
2351061 |
gaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttgccacacgcggtgacagaggatgtgctttt |
2351159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 41127029 - 41127165
Alignment:
| Q |
181 |
aatggagagaaggaggaagtgaaagaggaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatt |
280 |
Q |
| |
|
|||| |||||| ||||| | |||||||||||||||||||| || | |||| | ||||| ||| ||||||||||| ||||| |||| ||||| ||||| | |
|
|
| T |
41127029 |
aatgaagagaataaggaaattaaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcact |
41127128 |
T |
|
| Q |
281 |
ttttgttggcacacgcggtgaaagaggatgtggtttt |
317 |
Q |
| |
|
|| ||||| | || |||||||| |||||||||||||| |
|
|
| T |
41127129 |
ttgtgttgccccatgcggtgaaggaggatgtggtttt |
41127165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 26494607 - 26494681
Alignment:
| Q |
195 |
ggaagtgaaagaggaagacttgcagaaacttcgatatttgaagtgcgtggttttggaagggttgaggcgtcatcc |
269 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| | | |||||||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
26494607 |
ggaagtgagagaggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc |
26494681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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