View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_24 (Length: 331)
Name: NF3554_low_24
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 5047741 - 5047992
Alignment:
| Q |
1 |
tgttaggaggaattatcttcatttcattaagaaatatcagaggtattcattcccctttcttaccggtgtgcacagtttactgtatttgtatgccacaagt |
100 |
Q |
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| T |
5047741 |
tgttaggaggaattatcttcatttcattaagaaatatcagaggtattcattcccctttcttaccagtgtgcacagtttactgtatttgtatgccacaaga |
5047840 |
T |
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| Q |
101 |
gtgttgactatttgttgtgtatgcttgttcttattaggtatgagaagcgccattctaatattcctgcacacgtatcaccttgtttccgagtgaaggaagg |
200 |
Q |
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| T |
5047841 |
gtgttaactatttgttgtgtatgcttgttcttattaggtatgagaagcgccattctaatattcctgcacacgtatcaccttgtttccgagtgaaggaagg |
5047940 |
T |
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| Q |
201 |
ggatcatgttattattggccaatgcaggttagatctttgtagaataataaagc |
253 |
Q |
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| T |
5047941 |
ggatcatgttattattggccaatgcaggttaggtctttg-agaataataaagc |
5047992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 32586716 - 32586621
Alignment:
| Q |
134 |
ttaggtatgagaagcgccattctaatattcctgcacacgtatcaccttgtttccgagtgaaggaaggggatcatgttattattggccaatgcaggt |
229 |
Q |
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| T |
32586716 |
ttaggtatgagaagaggcattcaaacattccagctcatgtatcaccttgcttccgtgtcaaggaaggagaccatgttattatcggacaatgcaggt |
32586621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 32586851 - 32586809
Alignment:
| Q |
5 |
aggaggaattatcttcatttcattaagaaatatcagaggtatt |
47 |
Q |
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| T |
32586851 |
aggaggaattatcttcactttattaagaagtatcagaggtatt |
32586809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48217828 - 48217875
Alignment:
| Q |
1 |
tgttaggaggaattatcttcatttcattaagaaatatcagaggtattc |
48 |
Q |
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| T |
48217828 |
tgttaggaggaattatcttcacttcatcaagaaatatcagaggtattc |
48217875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 48217959 - 48218054
Alignment:
| Q |
134 |
ttaggtatgagaagcgccattctaatattcctgcacacgtatcaccttgtttccgagtgaaggaaggggatcatgttattattggccaatgcaggt |
229 |
Q |
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| T |
48217959 |
ttagatatgagaagaggcactcaaacattcctgcccatgtatcaccctgctttcgtgttaaggaaggagatcatgttattattggccaatgcaggt |
48218054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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