View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3554_low_29 (Length: 308)
Name: NF3554_low_29
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 27508425 - 27508714
Alignment:
| Q |
6 |
tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaaggacatctcatttggtaggaagtggaagctttgtattgg |
105 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508425 |
tggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaaggacatctcatttggtaggaagtggaagctttgtattgg |
27508524 |
T |
|
| Q |
106 |
acattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctag |
205 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27508525 |
acattgtttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctag |
27508624 |
T |
|
| Q |
206 |
gaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattactt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27508625 |
gaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaactcattagcatcatcaattactt |
27508714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 69 - 295
Target Start/End: Original strand, 27503544 - 27503770
Alignment:
| Q |
69 |
acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc |
167 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| |
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| T |
27503544 |
acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacaccacatgctacattatccctatga |
27503643 |
T |
|
| Q |
168 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27503644 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacag |
27503743 |
T |
|
| Q |
268 |
cacaactcattagcttcatcaattactt |
295 |
Q |
| |
|
||||| ||||| || ||||||| ||||| |
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|
| T |
27503744 |
cacaattcatt-gcatcatcaaatactt |
27503770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 289
Target Start/End: Complemental strand, 27468855 - 27468634
Alignment:
| Q |
69 |
acatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgc |
167 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |
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|
| T |
27468855 |
acatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgc |
27468756 |
T |
|
| Q |
168 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag |
267 |
Q |
| |
|
||||||||| || | ||||||||||||||||||| | | |||| | |||||||| ||||||||| |||||||||||||||| |||| ||||||||||||| |
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|
| T |
27468755 |
tctctatccatcaaacccttcaataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctcgccttcacaaacag |
27468656 |
T |
|
| Q |
268 |
cacaactcattagcttcatcaa |
289 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
27468655 |
gacaactcattggcatcatcaa |
27468634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 27524146 - 27524355
Alignment:
| Q |
69 |
acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgct |
168 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
27524146 |
acatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgat |
27524245 |
T |
|
| Q |
169 |
ctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagc |
268 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| | |||| || ||||||| ||||| ||| |||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
27524246 |
ctatatccttcaaccccttcaataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaacttcctctctccttcacaaacaga |
27524345 |
T |
|
| Q |
269 |
acaactcatt |
278 |
Q |
| |
|
| |||||||| |
|
|
| T |
27524346 |
aaaactcatt |
27524355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 68 - 289
Target Start/End: Original strand, 27514505 - 27514725
Alignment:
| Q |
68 |
gacatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatg |
166 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
27514505 |
gacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatg |
27514604 |
T |
|
| Q |
167 |
ctctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaaca |
266 |
Q |
| |
|
|||||||||| || | ||||||||||||||||| ||| | |||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||| || | |
|
|
| T |
27514605 |
ctctctatccatcaaacccttcaataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctctctccttcataa--a |
27514702 |
T |
|
| Q |
267 |
gcacaactcattagcttcatcaa |
289 |
Q |
| |
|
|||||||||||| || ||||||| |
|
|
| T |
27514703 |
gcacaactcattggcatcatcaa |
27514725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 289
Target Start/End: Complemental strand, 27476088 - 27475867
Alignment:
| Q |
69 |
acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc |
167 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
27476088 |
acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgc |
27475989 |
T |
|
| Q |
168 |
tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag |
267 |
Q |
| |
|
||||||||| || | ||||||||||||||||| ||| | |||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
27475988 |
tctctatccatcaaacccttcaataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacacttcctctctccttcataaacag |
27475889 |
T |
|
| Q |
268 |
cacaactcattagcttcatcaa |
289 |
Q |
| |
|
||||||| ||| || ||||||| |
|
|
| T |
27475888 |
cacaactgattggcatcatcaa |
27475867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 27524041 - 27524104
Alignment:
| Q |
6 |
tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaagga |
69 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27524041 |
tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaagga |
27524104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 27503442 - 27503499
Alignment:
| Q |
6 |
tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat |
63 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27503442 |
tggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat |
27503499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 27514410 - 27514471
Alignment:
| Q |
6 |
tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
67 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27514410 |
tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaag |
27514471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 27468950 - 27468899
Alignment:
| Q |
16 |
cattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
67 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27468950 |
cattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaag |
27468899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 27489628 - 27489684
Alignment:
| Q |
6 |
tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaatta |
62 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27489628 |
tggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaatta |
27489684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 27557006 - 27556962
Alignment:
| Q |
21 |
tcataatgaagaaaacatgtcttcagcatgtttacaaaattatga |
65 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27557006 |
tcataatgaagaaaacatgtctaaagcatgtttacaaaattatga |
27556962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 27506263 - 27506324
Alignment:
| Q |
6 |
tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
67 |
Q |
| |
|
||||||||| || | | |||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
27506263 |
tggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaag |
27506324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 27517383 - 27517475
Alignment:
| Q |
86 |
aagtggaagctttgtattggacattgtgtaagaaggtagggtacactc-taagacaacaccacatgctaccttatcactatgctctctatcctt |
178 |
Q |
| |
|
||||||||||||||| |||| |||||| | ||||||| ||||||| || ||||||||| |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
27517383 |
aagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatgctatattatc-ttatgctctctaacctt |
27517475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 27486524 - 27486460
Alignment:
| Q |
3 |
agatggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
67 |
Q |
| |
|
|||||||||||| || | | |||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
27486524 |
agatggacatcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatgaag |
27486460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 27476180 - 27476133
Alignment:
| Q |
16 |
cattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat |
63 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
27476180 |
cattatcataatgaagaaaacatgtctgaagcatgcttacaaaattat |
27476133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27497908 - 27497858
Alignment:
| Q |
8 |
gacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaa |
58 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
27497908 |
gacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa |
27497858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 27479444 - 27479400
Alignment:
| Q |
23 |
ataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag |
67 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
27479444 |
ataatgaagaaaacatgtctgaaacatgtttacacaattatgaag |
27479400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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