View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_low_38 (Length: 259)

Name: NF3554_low_38
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_low_38
NF3554_low_38
[»] chr7 (24 HSPs)
chr7 (34-212)||(21151091-21151268)
chr7 (34-212)||(16366457-16366634)
chr7 (48-212)||(7362507-7362670)
chr7 (34-212)||(45260386-45260563)
chr7 (34-212)||(44647904-44648080)
chr7 (34-210)||(9559013-9559188)
chr7 (34-212)||(4888406-4888583)
chr7 (42-212)||(12139267-12139435)
chr7 (34-212)||(47226035-47226209)
chr7 (34-212)||(18198195-18198372)
chr7 (66-212)||(25084719-25084864)
chr7 (55-207)||(47500262-47500414)
chr7 (55-153)||(33450503-33450602)
chr7 (42-154)||(39855781-39855892)
chr7 (38-147)||(989132-989240)
chr7 (70-204)||(47799895-47800018)
chr7 (107-208)||(19889066-19889156)
chr7 (36-153)||(34985906-34986024)
chr7 (167-207)||(30588489-30588529)
chr7 (55-147)||(33608857-33608949)
chr7 (174-207)||(41271816-41271849)
chr7 (167-208)||(47080374-47080415)
chr7 (167-207)||(32915903-32915943)
chr7 (32-108)||(47271105-47271180)
[»] chr5 (24 HSPs)
chr5 (39-210)||(4895699-4895869)
chr5 (32-212)||(11775731-11775911)
chr5 (34-212)||(35660568-35660745)
chr5 (48-212)||(39902354-39902517)
chr5 (34-212)||(13032058-13032234)
chr5 (34-211)||(37266671-37266847)
chr5 (34-210)||(32129576-32129751)
chr5 (34-212)||(14349743-14349919)
chr5 (34-212)||(18625380-18625557)
chr5 (34-212)||(40753121-40753298)
chr5 (34-207)||(43309062-43309224)
chr5 (54-204)||(34827140-34827288)
chr5 (48-212)||(8440944-8441107)
chr5 (92-212)||(4592740-4592858)
chr5 (123-212)||(1475686-1475774)
chr5 (55-147)||(3057419-3057510)
chr5 (70-154)||(36290598-36290682)
chr5 (55-154)||(3057135-3057233)
chr5 (71-143)||(27428877-27428949)
chr5 (57-146)||(29340999-29341087)
chr5 (169-206)||(41660061-41660098)
chr5 (172-208)||(14733509-14733545)
chr5 (54-154)||(32793370-32793469)
chr5 (70-154)||(41660102-41660186)
[»] chr2 (27 HSPs)
chr2 (34-211)||(35316765-35316941)
chr2 (34-212)||(28564830-28565008)
chr2 (32-209)||(13238623-13238799)
chr2 (34-209)||(23259446-23259620)
chr2 (39-150)||(2063353-2063464)
chr2 (124-212)||(45625111-45625198)
chr2 (124-212)||(39465714-39465801)
chr2 (70-208)||(374946-375073)
chr2 (34-102)||(45625038-45625106)
chr2 (54-106)||(11864913-11864965)
chr2 (168-212)||(41983431-41983475)
chr2 (39-154)||(4446860-4446975)
chr2 (55-154)||(21454476-21454573)
chr2 (162-212)||(374524-374574)
chr2 (166-212)||(10877641-10877686)
chr2 (167-208)||(3354844-3354885)
chr2 (70-208)||(8988809-8988935)
chr2 (70-208)||(23459841-23459968)
chr2 (167-208)||(29188606-29188647)
chr2 (54-146)||(15709772-15709863)
chr2 (163-207)||(30824122-30824166)
chr2 (55-110)||(40640709-40640765)
chr2 (163-207)||(41073026-41073070)
chr2 (163-207)||(373241-373285)
chr2 (162-206)||(2061322-2061366)
chr2 (70-154)||(36758856-36758940)
chr2 (169-209)||(42075456-42075496)
[»] chr6 (20 HSPs)
chr6 (48-211)||(7162024-7162186)
chr6 (34-210)||(4804389-4804564)
chr6 (48-206)||(12412582-12412739)
chr6 (34-211)||(17944102-17944278)
chr6 (34-212)||(1249107-1249282)
chr6 (34-204)||(21159328-21159497)
chr6 (93-212)||(29698102-29698220)
chr6 (34-153)||(13089708-13089827)
chr6 (32-212)||(27826477-27826656)
chr6 (124-210)||(32737815-32737900)
chr6 (33-212)||(227521-227700)
chr6 (55-154)||(13888502-13888602)
chr6 (70-154)||(24484875-24484959)
chr6 (34-110)||(32737897-32737973)
chr6 (70-206)||(2142288-2142413)
chr6 (162-208)||(30460763-30460809)
chr6 (48-114)||(1516180-1516245)
chr6 (48-114)||(1518269-1518334)
chr6 (77-154)||(2800613-2800690)
chr6 (162-206)||(17398780-17398824)
[»] chr3 (23 HSPs)
chr3 (48-211)||(27033591-27033753)
chr3 (34-212)||(19830390-19830568)
chr3 (34-212)||(43719906-43720083)
chr3 (34-212)||(2229922-2230099)
chr3 (48-212)||(34373770-34373933)
chr3 (34-208)||(40851716-40851890)
chr3 (49-212)||(34373559-34373721)
chr3 (33-212)||(46167332-46167510)
chr3 (45-208)||(550787-550948)
chr3 (55-212)||(12402904-12403061)
chr3 (70-208)||(31523663-31523790)
chr3 (34-134)||(24754673-24754773)
chr3 (34-134)||(24763670-24763770)
chr3 (55-207)||(48084763-48084915)
chr3 (34-83)||(24647905-24647954)
chr3 (70-208)||(42613033-42613160)
chr3 (48-201)||(566747-566898)
chr3 (167-208)||(3009192-3009233)
chr3 (70-208)||(49679265-49679392)
chr3 (167-208)||(27959060-27959101)
chr3 (162-207)||(32577476-32577520)
chr3 (162-206)||(36354349-36354393)
chr3 (36-116)||(44637976-44638055)
[»] chr4 (33 HSPs)
chr4 (34-212)||(34778360-34778537)
chr4 (34-210)||(56558220-56558395)
chr4 (34-212)||(3952129-3952306)
chr4 (34-212)||(19901877-19902054)
chr4 (34-212)||(33247089-33247264)
chr4 (34-212)||(5416425-5416603)
chr4 (34-210)||(23610583-23610758)
chr4 (34-209)||(38079679-38079853)
chr4 (34-210)||(5763121-5763296)
chr4 (34-212)||(18206999-18207176)
chr4 (34-201)||(33262511-33262677)
chr4 (34-212)||(39862456-39862633)
chr4 (48-193)||(30567859-30568003)
chr4 (34-212)||(47922038-47922211)
chr4 (34-154)||(12312434-12312555)
chr4 (48-212)||(24073556-24073718)
chr4 (107-212)||(12241440-12241544)
chr4 (34-212)||(12153110-12153270)
chr4 (166-212)||(12312593-12312639)
chr4 (162-212)||(17080726-17080776)
chr4 (162-212)||(52018722-52018772)
chr4 (70-208)||(37002246-37002373)
chr4 (39-147)||(1871280-1871387)
chr4 (70-208)||(56269071-56269199)
chr4 (101-154)||(31862246-31862299)
chr4 (55-154)||(47922346-47922446)
chr4 (54-114)||(52018799-52018859)
chr4 (71-154)||(56453816-56453899)
chr4 (70-204)||(5524404-5524527)
chr4 (34-89)||(33524323-33524378)
chr4 (70-147)||(36688183-36688260)
chr4 (70-154)||(42010113-42010197)
chr4 (172-208)||(47750341-47750377)
[»] scaffold0012 (1 HSPs)
scaffold0012 (34-212)||(208002-208179)
[»] chr8 (24 HSPs)
chr8 (48-212)||(30426642-30426805)
chr8 (34-212)||(36991295-36991472)
chr8 (34-212)||(28069658-28069835)
chr8 (53-212)||(41511201-41511359)
chr8 (48-212)||(10672487-10672648)
chr8 (32-153)||(44859126-44859245)
chr8 (54-204)||(40695227-40695375)
chr8 (34-211)||(28318855-28319037)
chr8 (34-212)||(10652576-10652754)
chr8 (67-212)||(24101955-24102099)
chr8 (166-210)||(5033047-5033091)
chr8 (48-89)||(5033313-5033354)
chr8 (70-154)||(26749543-26749627)
chr8 (162-212)||(12177650-12177700)
chr8 (162-212)||(12422078-12422128)
chr8 (55-153)||(42761710-42761808)
chr8 (66-114)||(12177572-12177620)
chr8 (66-114)||(12422000-12422048)
chr8 (54-146)||(18689495-18689586)
chr8 (167-206)||(24241530-24241569)
chr8 (55-153)||(45113267-45113366)
chr8 (167-204)||(34612520-34612557)
chr8 (167-207)||(1937236-1937276)
chr8 (80-152)||(34612562-34612634)
[»] chr1 (23 HSPs)
chr1 (34-212)||(50484325-50484502)
chr1 (48-212)||(12151706-12151869)
chr1 (34-211)||(50294022-50294198)
chr1 (34-212)||(23861911-23862092)
chr1 (39-212)||(40328215-40328386)
chr1 (48-212)||(48327127-48327290)
chr1 (92-212)||(12380927-12381046)
chr1 (92-212)||(12384994-12385113)
chr1 (80-204)||(24977187-24977310)
chr1 (34-212)||(45977961-45978121)
chr1 (131-210)||(7841766-7841844)
chr1 (34-105)||(12380836-12380907)
chr1 (34-105)||(12384903-12384974)
chr1 (34-116)||(7840638-7840720)
chr1 (55-147)||(18976284-18976377)
chr1 (34-145)||(32361266-32361377)
chr1 (70-154)||(52280034-52280118)
chr1 (168-207)||(42720849-42720888)
chr1 (48-154)||(39426206-39426312)
chr1 (162-203)||(1609624-1609665)
chr1 (55-87)||(1228520-1228552)
chr1 (101-153)||(7783206-7783258)
chr1 (70-154)||(30077639-30077723)
[»] scaffold0250 (1 HSPs)
scaffold0250 (56-212)||(7086-7241)
[»] scaffold0035 (1 HSPs)
scaffold0035 (54-212)||(16376-16533)
[»] scaffold0008 (1 HSPs)
scaffold0008 (48-212)||(9174-9334)
[»] scaffold0009 (1 HSPs)
scaffold0009 (55-200)||(6415-6559)
[»] scaffold0126 (1 HSPs)
scaffold0126 (54-206)||(22422-22572)
[»] scaffold0456 (2 HSPs)
scaffold0456 (124-206)||(13641-13722)
scaffold0456 (48-89)||(13741-13782)
[»] scaffold0006 (2 HSPs)
scaffold0006 (124-212)||(73889-73976)
scaffold0006 (39-89)||(73821-73871)
[»] scaffold0062 (1 HSPs)
scaffold0062 (54-146)||(58684-58775)
[»] scaffold0171 (1 HSPs)
scaffold0171 (80-208)||(17311-17428)
[»] scaffold0712 (1 HSPs)
scaffold0712 (170-207)||(3138-3175)
[»] scaffold0709 (1 HSPs)
scaffold0709 (170-207)||(3158-3195)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 21151268 - 21151091
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||| |||||||| |||    
T  21151268 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtccca 21151169  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21151168 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 21151091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 16366634 - 16366457
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||| ||||| || |||    
T  16366634 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtccca 16366535  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       |||||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  16366534 ccatcattaattatattttac-ttttttcaagattttacgtgtttttatctctccaaattgaagaaatggagaaacaca 16366457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 7362670 - 7362507
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||||||||| || || ||| || |||||||||||||||||||||||    
T  7362670 atttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcattaattat 7362571  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7362570 attttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 7362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 45260386 - 45260563
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||| |||||||||||||||||||||||||  ||||| |||||||| |||||||||| ||| |||||| | |||    
T  45260386 tgaagatcctctccatttggcaaaataaattgagttttgcaagttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatccca 45260485  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
     ||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45260486 tcatcattaattatattttacttttttt-aagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 45260563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 44648080 - 44647904
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtggg--ttc 131  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| | ||| |||||||  | |    
T  44648080 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtctcc 44647981  T
Q  132 caccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    | |||||||||||||||||||||       ||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  44647980 ctccatcattaattatattttac-atttttcaagattttatgtgtctttatctc---aaattgaagaaatggagaaacaca 44647904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 9559013 - 9559188
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||| |||||||||||||||||||||   |||| ||||||||||||| ||||| ||| |||||||| |||    
T  9559013 tgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtccca 9559112  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  9559113 ccatcattaattatatttta-tttttttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaaaca 9559188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 4888583 - 4888406
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||||||||||||||||| |||||||||||||||||||||  ||||| |||||||| |||| ||||| ||| |||| ||| |||    
T  4888583 tgaagatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtccca 4888484  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  4888483 ccatcattaattatatttta-tgttttttaagattttatgtgtctttatctctccaaatggaagaaattgagaaacaca 4888406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 12139435 - 12139267
Alignment:
Q  42 ctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagt-gggttccaccatcat 140  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||  |||| |||| ||||||||||    
T  12139435 ctcttcatttggcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcat 12139336  T
Q  141 taattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||        |||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  12139335 taattatattttacttttttt-aagattttatgtg--tttatctctccaaattgaagaaatggagaaacaca 12139267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 47226035 - 47226209
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||  ||||||| ||| | ||| || ||||| |||    
T  47226035 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaat--atggtgggtcccaccactaaatgggtccca 47226132  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       ||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  47226133 ccatcattaattatattttac-tttttccaagattttatgtgt-tttatctctccaaattgaagaaatagagaaacaca 47226209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 18198372 - 18198195
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||||||||||| ||||||| | |||  ||||| ||||||||||||| | ||  ||| ||||| || |||    
T  18198372 tgaagatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaaaatagatggtgggttctgccactaagtgagtccca 18198273  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||        ||||||||||||||  |||||||||  ||||||||||||||||||||||||    
T  18198272 ccatcattaattatatttta-tttttttcaagattttatgtgattttatctctacaaattgaagaaatggagaaacaca 18198195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 25084719 - 25084864
Alignment:
Q  66 agttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaag 165  Q
    ||||||| ||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||        |||     
T  25084719 agttttgtaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta-tttttttcaaa 25084817  T
Q  166 attttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||    
T  25084818 attttatgtgtctttatctcttcaaattaaaaaaatggagaaacaca 25084864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 207
Target Start/End: Original strand, 47500262 - 47500414
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||| |||||||| || |||||||||||||  ||||| | |||||||||||| ||| | ||| |||||||| ||| ||||||||||||| |||||    
T  47500262 aaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 47500361  T
Q  154 cnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
            ||| ||||| ||||||| ||||||||||||| | ||||||||||||    
T  47500362 -tttttttcaaaattttgtgtgtctatatctctctaaatggtagaaatggagaa 47500414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 33450602 - 33450503
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||| ||||||||||| |||||||||||||  ||||| | |||||||||||| ||| | ||| |||||||| ||| ||||||||||||| |||||    
T  33450602 aaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 33450503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 39855781 - 39855892
Alignment:
Q  42 ctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcatt 141  Q
    ||||| |||||||||| |||||||||||| | || |||||||||||||  ||||  ||| ||||||| | ||||| ||| |||||||| ||| |||||||    
T  39855781 ctcttcatttgacaaattaaatggagttt-gtaatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtcccatcatcatt 39855879  T
Q  142 aattatattttac 154  Q
    ||||| |||||||    
T  39855880 aattaaattttac 39855892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 989240 - 989132
Alignment:
Q  38 aatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccat 137  Q
    ||||||||  |||||||||| |||||||||||| |||| |||||||||||||  ||||| ||||| || |||| ||||| ||| |||| ||| | |||||    
T  989240 aatcctctccatttgacaaattaaatggagttt-gcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccat 989142  T
Q  138 cattaattat 147  Q
     |||||||||    
T  989141 aattaattat 989132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 47799895 - 47800018
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  || ||| ||||| ||| |||||||| ||||||||||||||||| ||||||            |||    
T  47799895 ttgcaatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattattttttact-----------ttt 47799983  T
Q  170 tatgtgtctttatctctctaaattgaagaaatgga 204  Q
    ||||||||||||||||||||||| ||| |||||||    
T  47799984 tatgtgtctttatctctctaaatagaacaaatgga 47800018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 19889066 - 19889156
Alignment:
Q  107 gtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||| ||||| ||| |||||||||||||||||||||||||| ||||||            |||||||||||||||||||||||||| ||| |||||||||    
T  19889066 gtgggtcctatcactaagtgggttccaccatcattaattattttttact-----------ttttatgtgtctttatctctctaaatggaataaatggaga 19889154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 34985906 - 34986024
Alignment:
Q  36 aaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccac 134  Q
    ||||||||||  |||||  ||||||||| ||||||||||| |||||||||||||  ||||| | |||||||||||| ||  | ||| || || || |||     
T  34985906 aaaatcctctcaatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtcaaaccactaaatgagtcccat 34986005  T
Q  135 catcattaattatatttta 153  Q
    ||||||||||||| |||||    
T  34986006 catcattaattatttttta 34986024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 30588529 - 30588489
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  30588529 ttttatgtgtctttatctctctaaatggaacaaatggagaa 30588489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 33608857 - 33608949
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaa-tagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||||||||||||| |||| |||||||||||||  ||||| ||| |||||||  ||| |||  || | ||| ||||||||||||||||||||    
T  33608857 aaaataaatggagttt-gcaatttggagagagataaacacaaaaaaatagatggaagatactactaccaggtgagttccaccatcattaattat 33608949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 41271849 - 41271816
Alignment:
Q  174 tgtctttatctctctaaattgaagaaatggagaa 207  Q
    ||||||||||||||||||| ||||||||||||||    
T  41271849 tgtctttatctctctaaatggaagaaatggagaa 41271816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 47080415 - 47080374
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||||| ||||||||||||| ||| |||||||||||    
T  47080415 ttttatgtgtctctatctctctaaatagaacaaatggagaaa 47080374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 32915943 - 32915903
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||| |||||||||||||||| |||| ||||||||||||||    
T  32915943 ttttttgtgtctttatctctccaaatggaagaaatggagaa 32915903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 47271105 - 47271180
Alignment:
Q  32 gatgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggt 108  Q
    |||||| |||||||  ||||  ||||||||||||||||| |||| |||||||||||||  ||||| |||| ||||||    
T  47271105 gatgaagatcctctccatttagcaaaataaatggagttt-gcaatttggagagagatagacacaaaaaattgatggt 47271180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 4895699 - 4895869
Alignment:
Q  39 atcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatc 138  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| ||||||||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatc 4895798  T
Q  139 attaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    ||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  4895799 attaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaaca 4895869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 11775911 - 11775731
Alignment:
Q  32 gatgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttc 131  Q
    |||||| |||||||  |||||  |||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||| |||||||| |    
T  11775911 gatgaagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcc 11775812  T
Q  132 caccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||| ||||||||||||||||||       ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  11775811 caccgtcattaattatattttactttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacaca 11775731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 35660568 - 35660745
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  35660568 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 35660667  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  35660668 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaacggagaaacaca 35660745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 39902517 - 39902354
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||| || ||| |||||||||||||||||||    
T  39902517 atttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggattccaccatcattaattat 39902418  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39902417 attttacttttttt-aagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 39902354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 13032234 - 13032058
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  ||||| ||| || ||||| |||    
T  13032234 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtccca 13032135  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13032134 ccatcattaattatatttta--tttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 13032058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 37266847 - 37266671
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| || || ||| |||||||| |||    
T  37266847 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtccca 37266748  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  37266747 ccatcattaattatatttta-gttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacac 37266671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 32129576 - 32129751
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||  ||||||||||||||||  ||| | ||||||||||||| ||||| ||| |||||||| |||    
T  32129576 tgaagatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtccca 32129675  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  32129676 ccatcattaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaaca 32129751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 14349919 - 14349743
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| ||||||| ||||||  |||||||||||||||||| |||||||||||||| |  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  14349919 tgaagatcctctctatttggtaaaataaatggagttttgtaagttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 14349820  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       ||||| ||||||||||||||||| || ||||| ||||||||||||||||||    
T  14349819 ccatcattaattatattttac-ttttttcaaga-tttatgtgtctttatctttccaaattaaagaaatggagaaacaca 14349743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 18625380 - 18625557
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||| ||||||||||||||||||| |  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  18625380 tgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 18625479  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| ||||  ||||||| || |||||||    
T  18625480 ccatcattaattatatttta-tttttttcaagattttatgtgtctttatctctccaaatgaaagaaattgaaaaacaca 18625557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 40753121 - 40753298
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| ||||||| |||||| ||||||||||  |||||||||||||||||| |||||  ||||| ||||| ||||||| ||||| ||| |||||||| |||    
T  40753121 tgaagatcctctctatttggcaaaataaataaagttttgcaagttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtccca 40753220  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       ||||||||||||||  |||||||||| ||||| ||||||||||||| ||||    
T  40753221 ccatcattaattatattttac-ttttttcaagattttatgtgcttttatctctccaaattaaagaaatggagaagcaca 40753298  T

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Target: chr5; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 43309224 - 43309062
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||  || || |||||||| ||||||| || ||  || |||||||||    
T  43309224 tgaagatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggttcca 43309125  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    ||||||||||||   ||||         |||||||||||||||||||||||||  |||||||||||||||||||    
T  43309124 ccatcattaatt---tttt--------tcaagattttatgtgtctttatctcttcaaattgaagaaatggagaa 43309062  T

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Target: chr5; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 34827288 - 34827140
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    |||||||||||||||| |||||||||||||||||||  || || ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||    
T  34827288 caaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaattatatttta 34827189  T
Q  154 cnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatgga 204  Q
    |       ||| ||||  |||||||||||||||  ||||| ||||||||||    
T  34827188 ctttttttcaaaattt--tgtgtctttatctcttcaaatttaagaaatgga 34827140  T

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Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 8440944 - 8441107
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||||||||||||||||||  |||||  ||| | ||||||||||||   | || ||| ||||| || |||||||||||||||||    
T  8440944 atttggcaaaataaatggagttttgcaagttggaggtagatagacaccaaaaatagatggtgcgacataccactaagtgtgtcccaccatcattaattat 8441043  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||        |||||| ||||||| |||||||||| ||||||| |||| |||||||||||    
T  8441044 attttacttttttt-aagattgtatgtgtatttatctctccaaattgatgaaacggagaaacaca 8441107  T

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Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 4592858 - 4592740
Alignment:
Q  92 cacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaa 191  Q
    ||||| ||||||||||||| || || ||| |||||||| ||||||||||||||||||||||||       ||| |||||||||||  ||||||||| |||    
T  4592858 cacaaaaaatagatggtgggtcttaccactaagtgggtcccaccatcattaattatattttac-ttttttcaatattttatgtgt-attatctctccaaa 4592761  T
Q  192 ttgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||    
T  4592760 ttgaagaaatggagaaacaca 4592740  T

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Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 1475686 - 1475774
Alignment:
Q  123 agtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||| ||| |||||||||||||| | |||||||    
T  1475686 agtgggtcccaccatcattaattatattttactttttt-caagattttatgtgtctttatcactccaaattgaagaaatgaaaaaacaca 1475774  T

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Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 3057510 - 3057419
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||||||| ||||||| ||| | |||||||||||  || || ||| ||||| ||||||||| ||||||||| |||||| |||||||||||||    
T  3057510 aaaataaatagagtttt-caattcggagagagatagacaaaaaaaaaagatgatggatcctaccacaaagtgagttccatcatcattaattat 3057419  T

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Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 36290682 - 36290598
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  ||||| |||||  |||||| ||||| ||| |||||| | ||||||||||||||||| ||||||    
T  36290682 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattattttttac 36290598  T

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Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 3057135 - 3057233
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||||||||| ||| |||| ||||| |||||||  ||||| ||||||||||||||||||| ||  ||||| ||  ||  |||||||||||||||||||    
T  3057135 aaaataaatggaattt-gcaatttggatagagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaattatattttac 3057233  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 27428877 - 27428949
Alignment:
Q  71 tgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaa 143  Q
    ||||| ||||| |||||||  ||||| |||||||||||| |||||| ||  ||||| ||||||||||||||||    
T  27428877 tgcaatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 29341087 - 29340999
Alignment:
Q  57 aataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaatta 146  Q
    |||||||||||| | |||| |||||||||||||  ||||  |||||||| |||| |||||  |  |||||||| ||||||||||||||||    
T  29341087 aataaatggagtat-gcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaatta 29340999  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 41660098 - 41660061
Alignment:
Q  169 ttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||||||||||||||||||||||| || ||||||||||    
T  41660098 ttatgtgtctttatctctctaaatggaggaaatggaga 41660061  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 14733545 - 14733509
Alignment:
Q  172 tgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  14733545 tgtgtctttatctttctaaatggaagaaatggagaaa 14733509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 32793469 - 32793370
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    |||||||||||||||||  ||| || ||||||||||| ||||| ||||||||| ||  || ||  || |||| ||| |||| ||||| ||||||||||||    
T  32793469 caaaataaatggagttta-caatttagagagagatatacacaaaaaatagatgatgattcttactactaagtaggtcccacaatcatcaattatatttta 32793371  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 41660186 - 41660102
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  ||||| |||||  |||||| ||  | ||| | |||||| ||||||||||||||||| ||||||    
T  41660186 ttgcaatttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaattattttttac 41660102  T

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Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 35316941 - 35316765
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||| |||||||| |||    
T  35316941 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtccca 35316842  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    |||||||||||||||||||||       ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  35316841 ccatcattaattatattttac-ttttttcaagattttatatgtctttatctctccaaattgaagaaatggagaaacac 35316765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 28565008 - 28564830
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||  |||||| |||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  28565008 tgaagatcctctccatttggcaaaataaatggagttttttaagttgtagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 28564909  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28564908 ccatcattaattatattttacttttttaaaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 28564830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 13238799 - 13238623
Alignment:
Q  32 gatgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttc 131  Q
    |||||| |||||||  ||||| |||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |    
T  13238799 gatgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcc 13238700  T
Q  132 caccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaac 209  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  13238699 caccatcattaattatatttta-tttttttcaagattttatgtgtctttatctctccaaattgaagaaattgagaaac 13238623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 23259446 - 23259620
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||| |||||| |||||  || |||||| | |||    
T  23259446 tgaagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagctggtgggtcctactactaagtggatccca 23259545  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaac 209  Q
    |||||||||||||||||||||        |||||||||| |||||||||| ||| |||||||||||||| ||||||    
T  23259546 ccatcattaattatattttacttttttt-aagattttatatgtctttatccctcaaaattgaagaaatgaagaaac 23259620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 2063464 - 2063353
Alignment:
Q  39 atcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtg-gatcctaacacaaagtgggttccaccat 137  Q
    |||||||| |||||||||||||||| |||||| |||| |||||||||||||  ||||| |||||||||||  | ||||| ||| ||||||||||||||||    
T  2063464 atcctcttcatttgacaaaataaatagagttt-gcaatttggagagagatagacacaaaaaatagatggtttggtcctaccaccaagtgggttccaccat 2063366  T
Q  138 cattaattatatt 150  Q
    ||||||| |||||    
T  2063365 cattaataatatt 2063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 45625111 - 45625198
Alignment:
Q  124 gtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||| ||||||||||||||| |||||||        |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45625111 gtgggtcccaccatcattaattttatttta-tatttttcaagattttacgtgtctttatctctctaaattgaagaaatggagaaacaca 45625198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 39465801 - 39465714
Alignment:
Q  124 gtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||| ||||||||||||||||||||||||       ||||||||||||||| |||||||||| |||||||| |||||||||||||||    
T  39465801 gtgggtcccaccatcattaattatattttactttttt-caagattttatgtgtttttatctctccaaattgaaaaaatggagaaacaca 39465714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 375073 - 374946
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  |||||| |||||  || |||||||| ||||||||||||||||| ||||||            |||    
T  375073 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattattttttact-----------ttt 374985  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  374984 tatgtgtctttatctctctaaatggaacaaatggagaaa 374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 45625038 - 45625106
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaata 102  Q
    |||| |||||||  ||||| |||||||||||||||||| |||||||||||||||||  |||||||||||    
T  45625038 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaagaaata 45625106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11864965 - 11864913
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatg 106  Q
    |||||||||||||||||| |||||||||||||||||  ||||| |||||||||    
T  11864965 caaaataaatggagttttacaagttggagagagatagacacaaaaaatagatg 11864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 41983431 - 41983475
Alignment:
Q  168 tttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  41983431 tttatgtgtctttatctctccaaattaaagaaatggagaaacaca 41983475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 4446860 - 4446975
Alignment:
Q  39 atcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatc 138  Q
    |||||||  |||||| ||||||||||||  | | ||| ||| |||||||||  ||||  |||||||| |||||||||| ||| || |||||| ||| |||    
T  4446860 atcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggtttcactatc 4446959  T
Q  139 attaattatattttac 154  Q
    ||||||||| ||||||    
T  4446960 attaattattttttac 4446975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 21454476 - 21454573
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||||||||||||| | || || ||||||||||  ||||| |||||||| |||| || || ||  |||||||||||||||||||||||||| ||||||    
T  21454476 aaaataaatggagttt-gtaatttagagagagatagacacaa-aaatagattgtgggtcataccattaagtgggttccaccatcattaattattttttac 21454573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 374524 - 374574
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||| |||||||||||||||  |||||| |||||||||||    
T  374524 caagattttatgtgtttttatctctctaaatgaaagaaagggagaaacaca 374574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 10877686 - 10877641
Alignment:
Q  166 attttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  10877686 attttatgtgt-tttatctctccaaattgaagaaatggagaaacaca 10877641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 3354844 - 3354885
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  3354844 ttttatgtgtctttatctctctaaatagaacaaatggagaaa 3354885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 8988935 - 8988809
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  || | | ||||| ||| |||||||| ||||||||||||||||| |||||             |||    
T  8988935 ttgcaatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaattatttttta------------tttt 8988848  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  8988847 tatgtgtctttatctctctaaatggaacaaatggagaaa 8988809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 23459841 - 23459968
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  ||| || ||||| ||| || ||||| ||||||||||||||||| ||||||            |||    
T  23459841 ttgcaatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattattttttact-----------ttt 23459929  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||| ||| ||| |||||||||||    
T  23459930 tatgtgtctttatctctctgaatggaacaaatggagaaa 23459968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 29188647 - 29188606
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  29188647 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 29188606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 15709863 - 15709772
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaatta 146  Q
    ||||||||||||| | | |||| |||||||||||||  || |  |||||||| |||||||||| ||  |||||||||||| ||||||||||||    
T  15709863 caaaataaatggaatat-gcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 15709772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 30824166 - 30824122
Alignment:
Q  163 aagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||    
T  30824166 aagattttttgtgtctatatctctctaaatggaagaaatggagaa 30824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 40640765 - 40640709
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtgg 110  Q
    ||||||||||||||||||||| ||||||||||||||  |||| | ||||||||||||    
T  40640765 aaaataaatggagttttgcaatttggagagagatatatacaaaagaatagatggtgg 40640709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 41073026 - 41073070
Alignment:
Q  163 aagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||||||| |||||||||||||||||||||  |||||||||||||    
T  41073026 aagattttttgtgtctttatctctctaaatgaaagaaatggagaa 41073070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 373241 - 373285
Alignment:
Q  163 aagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  373241 aagattttttgtatctttatctttctaaatggaagaaatggagaa 373285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 2061366 - 2061322
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||||||||||| ||||||||||||| |||| |||||||| ||||    
T  2061366 caagattttatgcgtctttatctctccaaatggaagaaattgaga 2061322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 36758856 - 36758940
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  ||||| || ||  |||||||||||| |   | ||||||||||| |||||||||||| ||||||    
T  36758856 ttgcaatttggagagagatagacacaaaaagtaagtggtggatcctatctttaggtgggttccacaatcattaattattttttac 36758940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 42075456 - 42075496
Alignment:
Q  169 ttatgtgtctttatctctctaaattgaagaaatggagaaac 209  Q
    ||||||||||||||||||| |||| ||||||||||| ||||    
T  42075456 ttatgtgtctttatctctccaaatggaagaaatggataaac 42075496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 7162186 - 7162024
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||  || |||||||| |||||||||||||||||    
T  7162186 atttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccatcattaattat 7162087  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    |||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7162086 attttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacac 7162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 4804564 - 4804389
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||||||| |||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  4804564 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 4804465  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  4804464 ccatcattaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaaca 4804389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 12412739 - 12412582
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  12412739 atttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaattat 12412640  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||||||       ||| ||||||||| | |||||||||| ||||||||||||||||||    
T  12412639 attttac-ttttttcaaaattttatgtatttttatctctccaaattgaagaaatggaga 12412582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 17944278 - 17944102
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||| | ||||| ||| || ||||| |||    
T  17944278 tgaagatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtccca 17944179  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    |||||||||||||||||||||       ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  17944178 ccatcattaattatattttac-tttttccaagattttatgtgtttttatctctccaaattgaagaaatggagaaacac 17944102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 1249107 - 1249282
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||| |||||||||||||| |   |||| ||||||||||||| ||||| ||| |||||||| |||    
T  1249107 tgaagatcctctccatttggcaaaataaatggagttttgtaagttggagagagacag--acaaaaaatagatggtgggtcctaccactaagtgggtccca 1249204  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  1249205 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatctttccaaattgaagaaatggagaaacaca 1249282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 21159328 - 21159497
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||  |||||||||| |||||||||||||||||||| |||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  21159328 tgaagatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 21159427  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatgga 204  Q
    |||||||||||||||||||||       ||||||||||||||||||||| |||| ||||||||||||||||    
T  21159428 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatatctccaaattgaagaaatgga 21159497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 29698220 - 29698102
Alignment:
Q  93 acaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaat 192  Q
    |||| ||||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||| |||| ||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatattttactttttt-caagattttatgtgtctttatttctccaaat 29698122  T
Q  193 tgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||    
T  29698121 tgaagaaatggagaaacaca 29698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 13089708 - 13089827
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||| |||||||||||||||||||||||  ||||| | ||||||||||| ||||| ||| |||||||  |||    
T  13089708 tgaagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaatatagatggtgggtcctaccactaagtgggcccca 13089807  T
Q  134 ccatcattaattatatttta 153  Q
    ||||||||||||||||||||    
T  13089808 ccatcattaattatatttta 13089827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 27826656 - 27826477
Alignment:
Q  32 gatgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttc 131  Q
    |||||| |||||||  |||||  ||||||| || || |||||||| | ||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |    
T  27826656 gatgaagatcctctccatttggtaaaataactgaagatttgcaaggttgagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 27826557  T
Q  132 caccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||||         ||  ||||||||||||||||||||| |||| |||||||| ||||||||||    
T  27826556 caccatcattaattatatttta-ttttttaaaattttttatgtgtctttatctctcaaaatggaagaaattgagaaacaca 27826477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 32737900 - 32737815
Alignment:
Q  124 gtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  32737900 gtgggttccaccatcattaattatattttactttttt-caaaattttatgtgtctttatctctccaaattgaagaaatggagaaaca 32737815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 227521 - 227700
Alignment:
Q  33 atgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttc 131  Q
    ||||| |||||||  |||||  ||||||||||||||||||||  |||||||||||||  ||||| | |||||||||||| ||||| ||| |||||| | |    
T  227521 atgaagatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatcc 227620  T
Q  132 caccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    || ||||||| ||||| ||||||       ||| | ||| ||||||| |||||||| |||||| |||||||||||| ||||    
T  227621 catcatcattgattattttttac-ctttttcaaaactttgtgtgtctatatctctccaaattgtagaaatggagaagcaca 227700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 13888502 - 13888602
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| | |||||||||||| ||||| ||  || ||||| ||| ||||||||||||| |||||    
T  13888502 aaaataaatagagttttgcaatttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtcccatcatcattaattatttttta 13888601  T
Q  154 c 154  Q
    |    
T  13888602 c 13888602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 24484959 - 24484875
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  ||||| |||||  |||||| ||||| ||| |||||||| ||||||||||||||||| ||||||    
T  24484959 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattattttttac 24484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 32737973 - 32737897
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtgg 110  Q
    |||| |||||||  ||||| |||||||||| |||||||||| ||||||||||||||  ||||| |||||||||||||    
T  32737973 tgaagatcctctccatttggcaaaataaatagagttttgcaggttggagagagatagacacaaaaaatagatggtgg 32737897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 2142288 - 2142413
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  |||||| ||| | ||  | |||||||||||||||||||||||| ||||||            |||    
T  2142288 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttccaccatcattaattattttttact-----------ttt 2142376  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    ||||||||||||||||||||||| || ||||||||||    
T  2142377 tatgtgtctttatctctctaaatggaggaaatggaga 2142413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 30460809 - 30460763
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||    
T  30460809 caagattttatgtgtctttatctctccaaatagaagaaatgaagaaa 30460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 1516180 - 1516245
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcc 114  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    |||| |||||||||||||||||    
T  1516180 atttggcaaaataaatggag-tttgcaatttggagagagatggatacaaaaaatagatggtggatcc 1516245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 1518269 - 1518334
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcc 114  Q
    ||||| |||||||||||||| ||||||| ||||||||||||    |||| |||||||||||||||||    
T  1518269 atttggcaaaataaatggag-tttgcaatttggagagagatggatacaaaaaatagatggtggatcc 1518334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 2800613 - 2800690
Alignment:
Q  77 ttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||||||||||  ||||  |||||||| ||||||| || ||  |||||||| ||||||||||| ||||| ||||||    
T  2800613 ttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattattttttac 2800690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 17398780 - 17398824
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||||||||||||||||||||||||| |||| || |||| |||||    
T  17398780 caagattttatgtgtctttatctctccaaatggaggaaagggaga 17398824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 27033753 - 27033591
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||| |||||| | |||||||||||||||||    
T  27033753 atttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccatcattaattat 27033654  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    |||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27033653 attttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacac 27033591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 19830390 - 19830568
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||| |||| |||  ||||| ||||||||||||| ||||| ||  |||||||| |||    
T  19830390 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtccca 19830489  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  19830490 ccatcattaattatattttaccttttttaaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacaca 19830568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 43719906 - 43720083
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||| |||||||||||||||||||||||||||||||||||||  ||||| ||||| || |||| ||||| ||| |||||||| |||    
T  43719906 tgaagatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtccca 43720005  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43720006 ccatcattaattatatttta-ttttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 43720083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 2230099 - 2229922
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||| |||||||||||||||||||||||||||  ||||| ||||||||| ||| ||||| ||| |||||| |||||    
T  2230099 tgaacatcctctccatttggcaaaataattggagttttgcaagttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggtttcca 2230000  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       ||| |||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  2229999 ccatcattaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattaaagaaatagagaaacaca 2229922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 34373933 - 34373770
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||| | |||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| || | ||| |||||||||||||||||    
T  34373933 atttggcaaaataaattgtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtcccaccatcattaattat 34373834  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||       |||||||||||||||||||||||||| |||||||| ||||| |||||||||    
T  34373833 attttac-ttttttcaagattttatgtgtctttatctctccaaattgaaaaaatgaagaaacaca 34373770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 40851890 - 40851716
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||| | | | ||| |||||||| | |    
T  40851890 tgaagatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtccta 40851791  T
Q  134 ccatcatt-aattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||| ||| |||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||    
T  40851790 ccatcattaaatcatattttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaa 40851716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 49 - 212
Target Start/End: Original strand, 34373559 - 34373721
Alignment:
Q  49 tttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattata 148  Q
    |||| |||||||||| ||||||||||||||  | |||||||  ||| | ||||||||||||| ||||| ||| |||||||| ||||||||||||||||||    
T  34373559 tttggcaaaataaatagagttttgcaagttccatagagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattata 34373658  T
Q  149 ttttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||       ||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  34373659 ttttac-ttttttcaagattttttgtctctttatctctccaaattgaagaaatggagaaacaca 34373721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 46167510 - 46167332
Alignment:
Q  33 atgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcc 132  Q
    ||||| |||||||  ||||  ||||||||||||||||||| ||||||||||||||||  ||||| ||||| ||||||| ||||| ||| |||||| | |     
T  46167510 atgaacatcctctccatttagcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtggatcct 46167411  T
Q  133 accatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||| ||||||||||||||||       ||||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  46167410 accattattaattatattttac-ttttttcaagattatatttgtctttatctctctaaattgaagaaatggaaaaacaca 46167332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 550787 - 550948
Alignment:
Q  45 tttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaat 144  Q
    |||||||| ||||||||||||||||| |||| ||||||| ||||||  |||| ||||||||||||||||||| ||  |||||||| ||||||| |||| |    
T  550787 tttatttggcaaaataaatggagttt-gcaatttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtgggtcccaccattattatt 550885  T
Q  145 tatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||        || ||||||||| |||||||||||| |||| |||||||||||||||    
T  550886 tatattttactttttta-aaaattttatgtatctttatctctccaaatggaagaaatggagaaa 550948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 12403061 - 12402904
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    ||||||||| |||||||||||||||||||||||||   | || || |||||||||||| ||| ||| ||||| || ||||||| ||||||||||||||||    
T  12403061 aaaataaatagagttttgcaagttggagagagatagatataaaaattagatggtggattctaccactaagtgagtcccaccattattaattatattttac 12402962  T
Q  155 nnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
            ||||||||||||||||||||||||| ||||| |  ||||| |||||||||    
T  12402961 ttttttttaagattttatgtgtctttatctctccaaattaagaaaatgaagaaacaca 12402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 31523663 - 31523790
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  |||||| |||||  || |||||||| ||||||||||||||||| ||||||            |||    
T  31523663 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattattttttact-----------ttt 31523751  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  31523752 tatgtgtctttatctctctaaatggaacaaatggagaaa 31523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 24754773 - 24754673
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||||||| |||||||||||||||||  ||||  |||||||||||   ||||| ||| |||||||| |||    
T  24754773 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtccca 24754674  T
Q  134 c 134  Q
    |    
T  24754673 c 24754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 24763770 - 24763670
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||||||| |||||||||||||||||  ||||  |||||||||||   ||||| ||| |||||||| |||    
T  24763770 tgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtccca 24763671  T
Q  134 c 134  Q
    |    
T  24763670 c 24763670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 207
Target Start/End: Complemental strand, 48084915 - 48084763
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||| ||||||||||| |||| ||||||||  ||||| | |||||||||||| ||| | ||| |||||||| ||| ||||||||||||| |||||    
T  48084915 aaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 48084816  T
Q  154 cnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
            ||| ||||| ||||||| |||||||| |||| | ||||||||||||    
T  48084815 -tttttttcaaaattttgtgtgtctatatctctccaaatggtagaaatggagaa 48084763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 24647954 - 24647905
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggaga 83  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  24647954 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggaga 24647905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 42613160 - 42613033
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| ||| |||||||||  || || |||||  |||||| ||||| ||| |||||||| ||||||||||||||||| ||||||            |||    
T  42613160 ttgcaatttgaagagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattattttttact-----------ttt 42613072  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  42613071 tatgtgtctttatctctctaaatagaacaaatggagaaa 42613033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 201
Target Start/End: Original strand, 566747 - 566898
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaa-tagatggtggatcctaacacaaagtgggttccaccatcattaatta 146  Q
    ||||| ||||||||||||||||| |||| |||||||||||||   |||| ||| || |||| |||||||| ||  |||||||| ||||| | |||| |||    
T  566747 atttggcaaaataaatggagttt-gcaatttggagagagatagatacaaaaaaatatatggcggatcctatcattaagtgggtcccacctttattattta 566845  T
Q  147 tattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaat 201  Q
    ||||||||       ||||||||||||| | |||||||||| |||| ||||||||    
T  566846 tattttac--tttttcaagattttatgtatttttatctctccaaatggaagaaat 566898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 3009233 - 3009192
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  3009233 ttttatgtgtctttatctctctaaatggaacaaatggagaaa 3009192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 49679265 - 49679392
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  ||| || ||||| ||| || ||||| ||||||||||||||||| ||||||            |||    
T  49679265 ttgcaatttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattattttttact-----------ttt 49679353  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||||||||||||||||  || |||||||||||    
T  49679354 tatgtgtctttatctctctaaatgaaacaaatggagaaa 49679392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 27959101 - 27959060
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    |||||||||| ||||||||||||||| ||| |||||||||||    
T  27959101 ttttatgtgtatttatctctctaaatggaacaaatggagaaa 27959060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 32577520 - 32577476
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    ||||||||| |||||||||||||||| |||| ||||||||||||||    
T  32577520 caagatttt-tgtgtctttatctctccaaatagaagaaatggagaa 32577476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 36354349 - 36354393
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    ||||||||| ||||||||||||| |||||||||| ||||| ||||    
T  36354349 caagattttttgtgtctttatctttctaaattgaggaaattgaga 36354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 44638055 - 44637976
Alignment:
Q  36 aaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatccta 116  Q
    ||||||||| | |||||||||||||||||||| | ||||| || ||||||||||  ||||  |||||||| ||||| ||||    
T  44638055 aaaatcctcatcatttgacaaaataaatggag-tatgcaattttgagagagataaacacataaaatagatagtggacccta 44637976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 34778537 - 34778360
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||||||||||||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||||| |||    
T  34778537 tgaagatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtccca 34778438  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  34778437 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatctctccacattgaagaaatggagaaacaca 34778360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 56558395 - 56558220
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  56558395 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtccca 56558296  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  56558295 ccatcattaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaaca 56558220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 3952129 - 3952306
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||| ||||||||||||||||||  || || ||||||||||||| ||||| ||| ||||||||  ||    
T  3952129 tgaagatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctca 3952228  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3952229 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 3952306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 19901877 - 19902054
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||  |||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  19901877 tgaagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 19901976  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  19901977 ccatcattaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacaca 19902054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 33247089 - 33247264
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||| ||| || |||||||||    
T  33247089 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggttcca 33247188  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||           ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33247189 ccatcattaattatattttatttttttc---gattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 33247264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 5416425 - 5416603
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||| ||||| ||| |||||||| |||    
T  5416425 tgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaa-aaatagattgtgggtcctaccactaagtgggtccca 5416523  T
Q  134 ccatcattaattatattttac-nnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||         |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  5416524 ccatcattaattatattttacttttttttaaagattttatgtgtctttatctgtccaaattgaagaaatggagaaacaca 5416603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 210
Target Start/End: Complemental strand, 23610758 - 23610583
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||| |||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| || || ||| |||||||| |||    
T  23610758 tgaagatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtccca 23610659  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||| ||||||||||       ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  23610658 ccatcattaaatatattttac-ttttttcaagattttatgtatctttatctctccaaattgaagaaatggagaaaca 23610583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 38079679 - 38079853
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||| ||||||||||||||||||||| |||| ||||||||||  ||||||||||||||||||| |||||  || |||||| |||||    
T  38079679 tgaagatcctctccatttaacaaaataaatggagttttgctagtttgagagagatagacacaagaaatagatggtgggtcctactactaagtggattcca 38079778  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaac 209  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  38079779 ccatcattaattatattttac-ttttttcaagattttatgtgtctttatctctccaaattgaaaaaatggagaaac 38079853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 5763121 - 5763296
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||| |||||||||| |||||||||||||||||   |||| ||||||||||||| ||||| ||| |||||||| |||    
T  5763121 tgaagatcctctcaatttggcaaaatatatggagttttacaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtccca 5763220  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  5763221 ccatcattaattatattttac-ttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaaca 5763296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 18206999 - 18207176
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||||||||||||||| ||||||||||||| ||||||||||  || || ||||||||||||| ||||| ||| |||||||| |||    
T  18206999 tgaagatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtccca 18207098  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
     ||||||||||||||||||||       ||||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  18207099 tcatcattaattatattttac-ctttttcaagattttatgtgtctttatctttccaaattgaagaaattgagaaacaca 18207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 33262511 - 33262677
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| ||||||| |||||| |||||||||| | |||||||||||| ||||||||||  ||||| ||||||||||||||||||| ||| || | ||| |||    
T  33262511 tgaagatcctctctatttggcaaaataaattgtgttttgcaagttagagagagatagacacaaaaaatagatggtggatcctaccactaaataggtccca 33262610  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaat 201  Q
    |||||||||||||||||||||        || |||||||||||||||||||||| |||||||||||||    
T  33262611 ccatcattaattatattttacttttttt-aaaattttatgtgtctttatctctccaaattgaagaaat 33262677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 39862633 - 39862456
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||| ||||||||| || ||||||||||| ||||||||||  ||||| ||||||||||||  ||||| ||| || || ||||||    
T  39862633 tgaagatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttcca 39862534  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  39862533 ccatcattaattatattttacttttttt-aagattttatgtgtctttatctctccaaattgaagaaaatgagaaacaca 39862456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 30568003 - 30567859
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||||||||||||||| |||||||||  ||||| ||||||||||||| ||||| ||| |||||||||||| |||||||||||||    
T  30568003 atttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaattat 30567904  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaatt 193  Q
    |||||||       ||| ||||||||||||||||||| || |||||    
T  30567903 attttac-ttttttcaaaattttatgtgtctttatctatcaaaatt 30567859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 47922038 - 47922211
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| ||||| |||||||| ||||||||||||| |||||||||||    | |||||  ||||| |||||||| |||| || || ||| ||||||||||||    
T  47922038 tgaatatcctttttatttggcaaaataaatggaattttgcaagtt----aaagataaacacaaaaaatagatagtgggtcttaccactaagtgggttcca 47922133  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||| |||||||||        ||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  47922134 ccatcattaaatatatttta-tttttttcaatattttacgtgtctttatctctctaaattgaagaaatggagaaacaca 47922211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 12312434 - 12312555
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaa-tagatggtggatcctaacacaaagtgggttcc 132  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  || || ||| |||||||||||||||| ||| |||||||| ||    
T  12312434 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtccc 12312533  T
Q  133 accatcattaattatattttac 154  Q
    | ||||||||||||||||||||    
T  12312534 atcatcattaattatattttac 12312555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 24073718 - 24073556
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||| |||| ||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| || ||||||||||||||    
T  24073718 atttggcaaaataaatggagatttgtaagttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccgccatcattaattat 24073619  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    || ||         |||||||||||||| ||| ||||||| |||| |||||||| ||||||||||    
T  24073618 atatt--tttttttcaagattttatgtgccttcatctctccaaatggaagaaattgagaaacaca 24073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 12241440 - 12241544
Alignment:
Q  107 gtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||| ||||| ||| |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||    
T  12241440 gtgggtcctaccactaagtgggtcccaccatcattaattatattttactttttt-caagattttatgtgtctttatctctccaaattgaagaaatggaga 12241538  T
Q  207 aacaca 212  Q
    ||||||    
T  12241539 aacaca 12241544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 12153270 - 12153110
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| || |||||||||| |||                 ||    
T  12153270 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaattagatggtgggtcc-----------------ca 12153188  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12153187 ccatcattaattatattttactttttt-caagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 12153110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 12312593 - 12312639
Alignment:
Q  166 attttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12312593 attttatgtgtctttatctctctaaattgaagaaatggagaaacaca 12312639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 17080726 - 17080776
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17080726 caagattttatctgtctttatctctccaaattgaagaaatggagaaacaca 17080776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 52018772 - 52018722
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  52018772 caagattttatgtgtttttatctctccaaattgaagaaatggagaaacaca 52018722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 37002246 - 37002373
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| ||||| |||||||  ||||| |||||  ||||||||||||  || |||||||| ||||||||||||||||| ||||||            |||    
T  37002246 ttgcaatttggaaagagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattattttttact-----------ttt 37002334  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  37002335 tatgtgtctttatctctctaaatggaacaaatggagaaa 37002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 1871387 - 1871280
Alignment:
Q  39 atcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatc 138  Q
    |||||||  ||||||||||||||||||||| | |||| |||||||||||||  || || | |||||| ||||||||||  || |||||||| ||| ||||    
T  1871387 atcctctcaatttgacaaaataaatggagtat-gcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatc 1871289  T
Q  139 attaattat 147  Q
    |||||||||    
T  1871288 attaattat 1871280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 56269071 - 56269199
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  ||||| |||||  |||||| ||||| ||| |||||||| ||||||||||||||||| ||||           |  |||    
T  56269071 ttgcaatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttttt----------tactttt 56269160  T
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  56269161 tatgtgtctttatctctctaaatggaacaaatggagaaa 56269199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 31862246 - 31862299
Alignment:
Q  101 tagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  31862246 tagatggtggatcctaccactaagtgggtcccaccatcattaattattttttac 31862299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 47922346 - 47922446
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||| ||||||||||| ||||||||| |||  ||||| | |||||||||||| ||||| ||| |||||||| ||| ||||  ||||||| |||||    
T  47922346 aaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcccatcatctataattatttttta 47922445  T
Q  154 c 154  Q
    |    
T  47922446 c 47922446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 52018859 - 52018799
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcc 114  Q
    ||||||||||||||||||||||||||||||||||||   |||| ||||| || ||||||||    
T  52018859 caaaataaatggagttttgcaagttggagagagatagatacaaaaaataaatagtggatcc 52018799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 56453816 - 56453899
Alignment:
Q  71 tgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    ||||| |||||||||||||  ||||| |||||| |||||| ||||| ||  |||||||| ||||||||||| ||||| ||||||    
T  56453816 tgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattattttttac 56453899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 5524527 - 5524404
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattt 169  Q
    |||||| |||||||||||||  || || |||||  |||||| ||||| ||  |||||||| ||||||||||||||||| ||||||            |||    
T  5524527 ttgcaatttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaattattttttact-----------ttt 5524439  T
Q  170 tatgtgtctttatctctctaaattgaagaaatgga 204  Q
    ||||||||||||||||||||||| ||| |||||||    
T  5524438 tatgtgtctttatctctctaaatggaacaaatgga 5524404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 33524378 - 33524323
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagata 89  Q
    |||| |||||||  ||||| |||||||||||||| |||| ||||||||||||||||    
T  33524378 tgaagatcctctccatttggcaaaataaatggagatttggaagttggagagagata 33524323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 36688183 - 36688260
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||| |||||||||||||  ||||| |||||  || ||  ||||| ||| |||||||| |||||||||||||||||    
T  36688183 ttgcaatttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaattat 36688260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 42010197 - 42010113
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||   |||| |||||  ||| || ||||| ||| || ||||| ||||||||||||||||| ||||||    
T  42010197 ttgcaatttggagagagatagatacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattattttttac 42010113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 47750377 - 47750341
Alignment:
Q  172 tgtgtctttatctctctaaattgaagaaatggagaaa 208  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  47750377 tgtgtttttatctctctaaatagaagaaatggagaaa 47750341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 208179 - 208002
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  208179 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtccca 208080  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
     ||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  208079 tcatcattaattatattttacttttttt-aagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 208002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 30426642 - 30426805
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||| |||||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||||| |||||||||||||||||    
T  30426642 atttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 30426741  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||       |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  30426742 attttac-ttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacaca 30426805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 36991472 - 36991295
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  || |||||||||||| ||| ||||| ||| |||||||| |||    
T  36991472 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtccca 36991373  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||| ||       |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  36991372 ccatcattaattatatttgac-ttttttcaagattttacgtgtctttatctctccaaattgaagaaatggagaaacaca 36991295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 28069835 - 28069658
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| |||||||||||||| ||||||||||||||||||| |  ||||| ||||||||||||| ||||| ||| |||||||| |||    
T  28069835 tgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 28069736  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| |||| |||||||| || |||||||    
T  28069735 ccatcattaattatatttta-tttttttcaagattttatgtgtctttatctctccaaatggaagaaattgaaaaacaca 28069658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 41511359 - 41511201
Alignment:
Q  53 acaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttt 152  Q
    ||||||||||||||||||||||||||||| |||||||   | || |||||||| |||| ||||| ||| |||||| ||||||||||||||||||||||||    
T  41511359 acaaaataaatggagttttgcaagttggaaagagatagatataaaaaatagatagtgggtcctatcactaagtggtttccaccatcattaattatatttt 41511260  T
Q  153 acnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||       ||||||||||||||| |||||||||| |||||||||||||||| |||||||    
T  41511259 ac-ttttttcaagattttatgtgtttttatctctccaaattgaagaaatggaaaaacaca 41511201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 10672487 - 10672648
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||||||||||||||||||||| | |  ||||| ||||||||||||||||||| ||| ||||| || |||||||||||||||||    
T  10672487 atttggcaaaataaatggagttttgcaagttggagagataga--cacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattat 10672584  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||        || ||||||||| | |||||||||| |||||||| ||||| |||||||||    
T  10672585 attttacccttttt-aaaattttatgtatttttatctctccaaattgaataaatgaagaaacaca 10672648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 44859126 - 44859245
Alignment:
Q  32 gatgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttc 131  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||   || | ||||||||||||| | ||| ||| |||||||| |    
T  44859126 gatgaagatcctctctatttgacaaaataaatggagttttgcaagttagagagagata--gactaaaaatagatggtgggttctaccactaagtgggtcc 44859223  T
Q  132 caccatcattaattatatttta 153  Q
    ||||||||||||||||||||||    
T  44859224 caccatcattaattatatttta 44859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 40695227 - 40695375
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||||||||||| | ||||||||||||||||  ||||| ||||||||||| | ||||| ||| ||||| ||||||||||||||| ||||||||||    
T  40695227 caaaataaatggagtttgg-aagttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtgagttccaccatcattagttatatttta 40695325  T
Q  154 cnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatgga 204  Q
    |       ||||||||||||| |||||||| ||| ||||||||||||||||    
T  40695326 c-ttttttcaagattttatgtttctttatccctccaaattgaagaaatgga 40695375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 28318855 - 28319037
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaata------gatggtggatcctaacacaaagtgg 127  Q
    |||| ||| ||||||||||  |||||||||||||||||||||||| ||||||||||| || || |||||      ||| |||| ||||| ||| ||||||    
T  28318855 tgaagatcttctttatttggtaaaataaatggagttttgcaagtttgagagagatatacaaaaaaaataaaaaaagatagtgggtcctaccactaagtgg 28318954  T
Q  128 gttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    || | ||||||||||||||||||||||        || ||||||||||||||| |||||| |||||||||||||||||||||||    
T  28318955 gtccaaccatcattaattatattttactttttttaaa-attttatgtgtctttgtctctccaaattgaagaaatggagaaacac 28319037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 10652576 - 10652754
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  |||||  ||||||||||| |||||||||||||||||||||||   |||| |||| |||||||| || ||  || || ||||| |||    
T  10652576 tgaagatcctctccatttggtaaaataaatggtgttttgcaagttggagagagatagatacaaaaaattgatggtgggtcatactactaattgggtccca 10652675  T
Q  134 ccatcattaattatatttt-acnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||||||||||| ||       ||| ||||||||||| |||||||||| |||||||||||||| |||||||||    
T  10652676 ccatcattaattatatttttactttttttcaaaattttatgtgt-tttatctctccaaattgaagaaatgaagaaacaca 10652754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 24102099 - 24101955
Alignment:
Q  67 gttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaaga 166  Q
    ||||||||||||  |||||||||  || || ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |        |||||    
T  24102099 gttttgcaagtttaagagagatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaattatatttca-tttttttcaaga 24102001  T
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||| ||||||||||||||| ||||| || |||| || |||||||    
T  24102000 ttttacgtgtctttatctctccaaattaaaaaaatagaaaaacaca 24101955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 5033091 - 5033047
Alignment:
Q  166 attttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  5033091 attttatgtgtctttatctctccaaattgaagaaatggagaaaca 5033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 5033354 - 5033313
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagata 89  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  5033354 atttggcaaaataaatggagttttgcaagttggagagagata 5033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 26749543 - 26749627
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  ||||| |||||  || ||| ||||| ||| |||||||| ||||||||||||||||| ||||||    
T  26749543 ttgcaatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattattttttac 26749627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 12177650 - 12177700
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||||||||    
T  12177650 caagattttaattgtccttatctctttaaattgaagaaatggagaaacaca 12177700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 12422078 - 12422128
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||||||||    
T  12422078 caagattttaattgtccttatctctttaaattgaagaaatggagaaacaca 12422128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 42761808 - 42761710
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||||||  |  |||| ||| |||||||||  ||||  |||||||| |||||||||| |||  ||||||||||| ||||||||||||| |||||    
T  42761808 aaaataaatggaagtacgcaatttgaagagagatagacacataaaatagatagtggatcctaccactcagtgggttccatcatcattaattatttttta 42761710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 12177572 - 12177620
Alignment:
Q  66 agttttgcaagttggagagagatatgcacaagaaatagatggtggatcc 114  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||    
T  12177572 agttttgcaagttggagagagatagatacaaaaaatagatggtggatcc 12177620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 12422000 - 12422048
Alignment:
Q  66 agttttgcaagttggagagagatatgcacaagaaatagatggtggatcc 114  Q
    ||||||||||||||||||||||||   |||| |||||||||||||||||    
T  12422000 agttttgcaagttggagagagatagatacaaaaaatagatggtggatcc 12422048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 18689586 - 18689495
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaatta 146  Q
    ||||||||||||| | | |||| |||||||||||||  || |  |||||||| |||||||||| ||  |||||||||||| ||||||||||||    
T  18689586 caaaataaatggaatat-gcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 18689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 24241569 - 24241530
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  24241569 ttttatgtgtctttatctctctaaatggaggaaatggaga 24241530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 45113366 - 45113267
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||| | ||||||||| ||||||||| |||  ||||| | |||||||||||| ||| | ||| ||||| || ||| ||||||||||||| |||||    
T  45113366 aaaataaattgtgttttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgtcccatcatcattaattatttttta 45113267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 34612557 - 34612520
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatgga 204  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  34612557 ttttatgtgtctttatctctctaaatggaacaaatgga 34612520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 1937236 - 1937276
Alignment:
Q  167 ttttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||||||||||| ||||||||||||| ||| ||||||||||    
T  1937236 ttttatgtgtctctatctctctaaatggaacaaatggagaa 1937276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 34612634 - 34612562
Alignment:
Q  80 gagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttt 152  Q
    ||||||||||  ||||| |||||  |||||| ||||| ||| ||||||||  |||||||||||||||| ||||    
T  34612634 gagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaattatttttt 34612562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 50484502 - 50484325
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| | | | ||| |||||||| |||    
T  50484502 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtccca 50484403  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    || ||||||||||||||||||       |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  50484402 ccgtcattaattatattttac-ttttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacaca 50484325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 12151869 - 12151706
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||||||||| ||||||||||||| |  ||||| |||||||| |||| ||||| ||| |||||||| |||||||||||||||||    
T  12151869 atttggcaaaataaatggagttttgccagttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattat 12151770  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||       |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  12151769 attttac-ttttttcaagattttatgtgtctttatctctccaaattgaataaatggagaaacaca 12151706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 50294022 - 50294198
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||| ||||| ||| |||||| | | |    
T  50294022 tgaagatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatccta 50294121  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacac 211  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  50294122 ccatcattaattatatttta-tttttttcaagattttatgtgtctttatctctccaaatggaagaaattgagaaacac 50294198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 23861911 - 23862092
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtgg---atcctaacacaaagtgggtt 130  Q
    |||| ||||||| |||||  ||||||||||| ||||||||||||||||||||||||  ||||| |||||||||||||   |||||| ||| |||||| |     
T  23861911 tgaatatcctctctatttagcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtggtgaatcctaccactaagtggatc 23862010  T
Q  131 ccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  23862011 ccaccatcattaattatattttattttttttcaagattttatgtgtctttatctttccaaattgaagaaatagagaaacaca 23862092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 40328386 - 40328215
Alignment:
Q  39 atcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatc 138  Q
    |||||||  ||||| |||||||||||||||||||||| ||||||||| | |  ||||| ||||||||||||| ||| | ||| |||||||||||||||||    
T  40328386 atcctctccatttggcaaaataaatggagttttgcaaattggagagataga--cacaa-aaatagatggtgggtcccaccactaagtgggttccaccatc 40328290  T
Q  139 attaattatattttacnnnnnnncaagattttatgtgtc-tttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||| |||||||||||       |||||||||||||||| |||||||||| ||||| |||||||| |||||||||    
T  40328289 attagttatattttactttttttcaagattttatgtgtcttttatctctccaaattaaagaaatgaagaaacaca 40328215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 48327127 - 48327290
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||| |||||||||||||||||||||  || || ||||||||||||  ||||| ||| ||||||| ||||||||||||||||||    
T  48327127 atttggcaaaataaatggagatttgcaagttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtggg-tccaccatcattaattat 48327225  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||||||        |||||||||||||  |||||| |||| |||| |||||||| || |||||||    
T  48327226 attttattttttttcaagattttatgtacctttatatctccaaatggaagaaattgataaacaca 48327290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 12380927 - 12381046
Alignment:
Q  92 cacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaa 191  Q
    ||||| ||||||||||||| | ||| ||| ||||| || ||||||||||||||||||||||||       |||||||||||||||||||||||||| |||    
T  12380927 cacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttactttttt-caagattttatgtgtctttatctctccaaa 12381025  T
Q  192 ttgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||    
T  12381026 ttgaagaaatggagaaacaca 12381046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 12384994 - 12385113
Alignment:
Q  92 cacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaa 191  Q
    ||||| ||||||||||||| | ||| ||| ||||| || ||||||||||||||||||||||||       |||||||||||||||||||||||||| |||    
T  12384994 cacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatattttactttttt-caagattttatgtgtctttatctctccaaa 12385092  T
Q  192 ttgaagaaatggagaaacaca 212  Q
    |||||||||||||||||||||    
T  12385093 ttgaagaaatggagaaacaca 12385113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 24977310 - 24977187
Alignment:
Q  80 gagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctt 179  Q
    ||||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||        ||||||||||| ||| ||    
T  24977310 gagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcattagttatattttattttttttcaagattttat-tgtatt 24977212  T
Q  180 tatctctctaaattgaagaaatgga 204  Q
    |||||||||||||  ||||||||||    
T  24977211 tatctctctaaatgtaagaaatgga 24977187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 45978121 - 45977961
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||   |||| |||||||||                 |||||| |||    
T  45978121 tgaagatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatg-----------------gtgggtccca 45978039  T
Q  134 ccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
     |||| ||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45978038 gcatcgttaattatatttta-tttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacaca 45977961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 7841766 - 7841844
Alignment:
Q  131 ccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaaca 210  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  7841766 ccaccatcattaattatattttactttttt-caagattttatgtgtctttatctctccaaattgaagaaatggaaaaaca 7841844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 12380836 - 12380907
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagat 105  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  12380836 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 12384903 - 12384974
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagat 105  Q
    |||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  12384903 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 7840638 - 7840720
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatccta 116  Q
    |||| ||||| || ||||| || |||||||||||||||| ||||||||||||||||  ||||||||||||||| ||| |||||    
T  7840638 tgaagatcctattcatttggcagaataaatggagttttgtaagttggagagagatagacacaagaaatagatgatgggtccta 7840720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 18976284 - 18976377
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaaga-aatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||||||| ||||||||||| |||||||||||||  ||||| | |||||||||||||||| | ||  |||| ||| ||| |||||||||||||    
T  18976284 aaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggtcccatcatcattaattat 18976377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 32361266 - 32361377
Alignment:
Q  34 tgaaaatcctctttatttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttcca 133  Q
    ||||||||||||  |||||   |||||| | |||||||| |||||||||||||||   ||||| | |||||||||||||||||  || |||| ||| |||    
T  32361266 tgaaaatcctctccatttggtgaaataattagagttttgtaagttggagagagatggacacaaaagatagatggtggatcctactactaagtaggtccca 32361365  T
Q  134 ccatcattaatt 145  Q
     |||||||||||    
T  32361366 tcatcattaatt 32361377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 52280034 - 52280118
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  || || |||||  |||||| ||||| ||| |||||| | ||||||||||||||||| ||||||    
T  52280034 ttgcaatttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattattttttac 52280118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 42720849 - 42720888
Alignment:
Q  168 tttatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  42720849 tttatgtgtctttatctctctaaatgaaagaaatggagaa 42720888  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 39426312 - 39426206
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    |||||| ||||||||||||  |   ||| |||||||||||||  ||||  |||||||| |||| ||||| ||| || ||||| |||| ||||||||||||    
T  39426312 atttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattat 39426213  T
Q  148 attttac 154  Q
     ||||||    
T  39426212 tttttac 39426206  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 1609624 - 1609665
Alignment:
Q  162 caagattttatgtgtctttatctctctaaattgaagaaatgg 203  Q
    |||||||||||||||||||| ||||||||||  |||||||||    
T  1609624 caagattttatgtgtctttacctctctaaatgaaagaaatgg 1609665  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 1228520 - 1228552
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagaga 87  Q
    ||||||||||||||||||||| |||||||||||    
T  1228520 aaaataaatggagttttgcaatttggagagaga 1228552  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 7783206 - 7783258
Alignment:
Q  101 tagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||| |||||||||| ||  |||||| || ||||||||||||||||||||||    
T  7783206 tagattgtggatcctatcattaagtggattgcaccatcattaattatatttta 7783258  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 30077639 - 30077723
Alignment:
Q  70 ttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||| |||||||||||||  ||||| |||||  |||||| | ||| ||| ||||| || |||| |||||||||||| ||||||    
T  30077639 ttgcaatttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaattattttttac 30077723  T

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Target: scaffold0250 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 212
Target Start/End: Complemental strand, 7241 - 7086
Alignment:
Q  56 aaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacn 155  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||  |  ||||||||||||||||||||||||||||||||      
T  7241 aaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaattatatttta-t 7143  T
Q  156 nnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
          ||||||||||| |||||||||||||  |||||||||||||| |||||||||    
T  7142 ttttttcaagattttatatgtctttatctctgcaaattgaagaaatgaagaaacaca 7086  T

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Target: scaffold0035 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 16376 - 16533
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||| ||||| ||| |||||||| ||| |||||||||||||||||||    
T  16376 caaaataaatggagttttgcaagttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcccatcatcattaattatatttta 16475  T
Q  154 cnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
            |||||||||||||   |||||||||| ||||||||||||||||||||||||    
T  16476 -tttttttcaagattttatgtaattttatctctccaaattgaagaaatggagaaacaca 16533  T

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Target: scaffold0008 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 9174 - 9334
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattat 147  Q
    ||||| |||||||||||||| |||||||||||||||||||||  ||||  ||||||||||||| ||| | ||| |||||| |||||||||||||||||||    
T  9174 atttggcaaaataaatggagatttgcaagttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggattccaccatcattaattat 9273  T
Q  148 attttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    ||| |          ||||||| ||||| ||||||||||| |||| |||||||| ||||||||||    
T  9274 attat----ttttttaagatttcatgtgcctttatctctccaaatggaagaaattgagaaacaca 9334  T

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Target: scaffold0009 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 6415 - 6559
Alignment:
Q  55 aaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttac 154  Q
    |||||||||||  |||||||||||||| ||||| |  ||||| ||||||||||||| |||||  || || ||||| | ||||||||||||||||||||||    
T  6415 aaaataaatgggattttgcaagttggaaagagacagacacaaaaaatagatggtgggtcctacaactaaatgggtacaaccatcattaattatattttac 6514  T
Q  155 nnnnnnncaagattttatgtgtctttatctctctaaattgaagaaa 200  Q
           |||||||||||||||||||||||||| ||||||||||||    
T  6515 -tttttccaagattttatgtgtctttatctctcaaaattgaagaaa 6559  T

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Target: scaffold0126 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 22422 - 22572
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatatttta 153  Q
    ||||||||||||||||| |||| ||  | |||||||  ||||| |||||||| |||||||||| ||| ||||| ||||||| || |||||||||||||||    
T  22422 caaaataaatggagttt-gcaatttacaaagagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaataattaattatatttta 22520  T
Q  154 cnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |       ||||||||||||||| |||||||||||||||  ||||||||||||    
T  22521 c-ttttttcaagattttatgtgtatttatctctctaaatgtaagaaatggaga 22572  T

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Target: scaffold0456 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 13722 - 13641
Alignment:
Q  124 gtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggaga 206  Q
    |||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||    
T  13722 gtgggtcccaccatcattaattatattttactttttt-caagattttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

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Target: scaffold0456; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 13782 - 13741
Alignment:
Q  48 atttgacaaaataaatggagttttgcaagttggagagagata 89  Q
    ||||| |||||||||| ||||||||| |||||||||||||||    
T  13782 atttggcaaaataaatagagttttgctagttggagagagata 13741  T

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Target: scaffold0006 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 73889 - 73976
Alignment:
Q  124 gtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctttatctctctaaattgaagaaatggagaaacaca 212  Q
    |||||| ||| |||||||||||||||||||        ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  73889 gtgggtcccatcatcattaattatatttta-tttttttcaagattttatgtgtttttatctctctaaattgaagaaatggagaaacaca 73976  T

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Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 73821 - 73871
Alignment:
Q  39 atcctctttatttgacaaaataaatggagttttgcaagttggagagagata 89  Q
    ||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  73821 atcctctctatttggcaaaataaatggtgttttgcaagttggagagagata 73871  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 58775 - 58684
Alignment:
Q  54 caaaataaatggagttttgcaagttggagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaatta 146  Q
    ||||||||||||| | | |||| |||||||||||||  || |  |||||||| |||||||||| ||  |||||||||||| ||||||||||||    
T  58775 caaaataaatggaatat-gcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 58684  T

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Target: scaffold0171 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 17311 - 17428
Alignment:
Q  80 gagagagatatgcacaagaaatagatggtggatcctaacacaaagtgggttccaccatcattaattatattttacnnnnnnncaagattttatgtgtctt 179  Q
    ||||||||||  ||||| |||||  || ||| ||||| ||| |||||||| ||||||||||||||||| ||||||            |||||||||||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaattattttttact-----------ttttatgtgtctt 17399  T
Q  180 tatctctctaaattgaagaaatggagaaa 208  Q
    ||||||||||||| ||| ||||| |||||    
T  17400 tatctctctaaatggaacaaatgaagaaa 17428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 3138 - 3175
Alignment:
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    ||||||||||||||||||||||| || |||||||||||    
T  3138 tatgtgtctttatctctctaaatggaggaaatggagaa 3175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 3158 - 3195
Alignment:
Q  170 tatgtgtctttatctctctaaattgaagaaatggagaa 207  Q
    ||||||||||||||||||||||| || |||||||||||    
T  3158 tatgtgtctttatctctctaaatggaggaaatggagaa 3195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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