View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_42 (Length: 252)
Name: NF3554_low_42
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 29657273 - 29657111
Alignment:
| Q |
1 |
ttaaattttaaaaatgacaagaataagttcaaaccaattcagtttgttaccnnnnnnnncctagtcagtttatcatttttccagaaaaactaagagttcg |
100 |
Q |
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| T |
29657273 |
ttaaattttaaaaatgacaagaataagttcaaaccaattcagtttgttaccaaataaaatctagtcagtttatcatttttccagaaaaactaagagttcg |
29657174 |
T |
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| Q |
101 |
aactgtctatcacatgaaaaatacgagttacttcaactttgcctggccccaaataagagtatc |
163 |
Q |
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| T |
29657173 |
aactgtctagcacatgaaaaatacgagttacttccactttgcctggccccaaataagagtatc |
29657111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 37683485 - 37683325
Alignment:
| Q |
1 |
ttaaattttaaaaatgacaagaataagttcaaaccaattcagtttgttaccnnnnnnnnccta-gtcagtttatcatttttccagaaaaactaagagttc |
99 |
Q |
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| T |
37683485 |
ttaaattttaaaaatgaaaagaaaaagttcaaaccaattcagttcattaccaaaaaaagcccaagtcagtttatcattttaccagaaaaattaagagttc |
37683386 |
T |
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| Q |
100 |
gaactgtctatcacatgaaaaatacgagttacttcaactttgcctggccccaaataagagt |
160 |
Q |
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| T |
37683385 |
agtctgtatagcacatgaagaatacgaattacttccgctttgcctggccccaaataagagt |
37683325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 20746185 - 20746036
Alignment:
| Q |
66 |
cagtttatcatttttccagaaaaactaagagttcgaactgtctatcacatgaaaaatacgagttacttcaactttgcctggccccaaataagagtatcga |
165 |
Q |
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| T |
20746185 |
cagtttatcatttttccagaaaaattaagagttcagtttgtctaccacaagaa---tacgagtttcttccactttgtctagccccaaataagagtgacga |
20746089 |
T |
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| Q |
166 |
gcattcgtcacagtcataaacatcggaa--agaaatagtgaagctataatgtt |
216 |
Q |
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| T |
20746088 |
gcattcatcacagtcataaacatcggaaagagaaatagtgaagttatagtgtt |
20746036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 20746388 - 20746339
Alignment:
| Q |
2 |
taaattttaaaaatgacaagaataagttcaaaccaattcagtttgttacc |
51 |
Q |
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||||||||||||||| || |||||||||| ||||||||||||||||||| |
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| T |
20746388 |
taaattttaaaaatggaaataataagttcataccaattcagtttgttacc |
20746339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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