View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_5 (Length: 539)
Name: NF3554_low_5
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 247 - 531
Target Start/End: Original strand, 10812011 - 10812295
Alignment:
| Q |
247 |
ttaatttggaataactggaacagagaaatatggttctgccattggtgcatcaattcccatcatccttgattcactagcaacatctccaaggaaaccattg |
346 |
Q |
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| T |
10812011 |
ttaatttggaataactggaacagagaaatatggttctgccattggtgcatcaattcccatcatccttgattcactagcaacatctccaaggaaaccattg |
10812110 |
T |
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| Q |
347 |
taaaatgctttaaccttaattactatgtaaagaaaagatgttgcaatgtaagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctat |
446 |
Q |
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| T |
10812111 |
taaaattctttaaccttaattactatgtaaagaaaagatgttgcaatgtaagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctac |
10812210 |
T |
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| Q |
447 |
gttttgtacccttttcaagcgatgatcccttgtttttgtgttctttgaagttgctttcttcagggtagatgatgctattcttctc |
531 |
Q |
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| T |
10812211 |
gttttgtacccttttcaagcgatgatcccttatttttgtgttctttgaagttgctttcttcagggtagatgatgctattcttctc |
10812295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 10811787 - 10811915
Alignment:
| Q |
9 |
atattttggttaaatattacattcaatacttcattacataaatatgtaattttactacaaaagtagggaacatttaagcaaatctgtgctaattaattac |
108 |
Q |
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| T |
10811787 |
atattttgtttaaatattacattcattacttcattacataaatatgtaattttacttcaaaagtagggaacatttaagcaaatctgtgctaattaattac |
10811886 |
T |
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| Q |
109 |
tacaaaagttcacctcaaatttgatacta |
137 |
Q |
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| T |
10811887 |
tacaaaagttcacctcaaatttgatacta |
10811915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 10811970 - 10812002
Alignment:
| Q |
196 |
atactagacattacaatcatgcatgatattgct |
228 |
Q |
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| T |
10811970 |
atactagacattataatcatgcatgatattgct |
10812002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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