View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_53 (Length: 227)
Name: NF3554_low_53
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_53 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26135185 - 26135411
Alignment:
| Q |
1 |
gaatttatgctacctaaaggcctctacatgtggttattcttaccatcattgcatcgggacgctgataattggggaccagatgctacaaagttcaatccag |
100 |
Q |
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| T |
26135185 |
gaatttatgctacctaaaggcatctacatgtggttattcttgccatcattgcatcgagacgctgataattggggaccagatgctacaaagttcaatccag |
26135284 |
T |
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| Q |
101 |
agagatttgctaacggtgtttctgcatcatgtaagtatcctcaggcatatataccatttggacttgggagtcgacattgtctaggtcaaaacttttccat |
200 |
Q |
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| T |
26135285 |
agagatttgctaacggtgtttctgcatcatgtaagtatcctcaggcatatataccatttggacttgggagtcgacattgtctaggtcaaaacttttccat |
26135384 |
T |
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| Q |
201 |
tacagaaatgaaggtagtactcagtct |
227 |
Q |
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| T |
26135385 |
tacagaaatgaaggtagtactcagtct |
26135411 |
T |
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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 25928324 - 25928128
Alignment:
| Q |
13 |
cctaaaggcctctacatgtggttattcttaccatcattgcatcgggacgctgataattggggaccagatgctacaaagttcaatccagagagatttgcta |
112 |
Q |
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|||||||| |||||||| ||| | ||| | |||| ||||||| ||| |||||||||||||||| ||||||||| | ||||| ||||| |||||||||| |
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| T |
25928324 |
cctaaaggactctacatatggatgttcgtcccattgctgcatcgcgacactgataattggggaccggatgctacagaattcaagccagaaagatttgcta |
25928225 |
T |
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| Q |
113 |
acggtgtttctgcatcatgtaagtatcctcaggcatatataccatttggacttgggagtcgacattgtctaggtcaaaacttttccattacagaaat |
209 |
Q |
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| T |
25928224 |
atggtctttctggagcttgtaagtatcctcaagcttatctaccatttggatatggaagtcgacattgcttaggccaaaactttaccctgacagaaat |
25928128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 2267 - 2149
Alignment:
| Q |
91 |
ttcaatccagagagatttgctaacggtgtttctgcatcatgtaagtatcctcaggcatatataccatttggacttgggagtcgacattgtctaggtcaaa |
190 |
Q |
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||||| ||||| ||||||||||| ||| |||||| | | |||||||||||||| || ||| ||||||||||| ||| ||||||||||| |||| |||| |
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| T |
2267 |
ttcaagccagaaagatttgctaatggtctttctggagcttgtaagtatcctcaagcttatctaccatttggatatggaagtcgacattgcttaggccaaa |
2168 |
T |
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| Q |
191 |
acttttccattacagaaat |
209 |
Q |
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| T |
2167 |
actttaccctgacagaaat |
2149 |
T |
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