View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_54 (Length: 222)
Name: NF3554_low_54
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 31042052 - 31041872
Alignment:
| Q |
20 |
actagtgttactgttaatagaaatggaatgtcaacttgtagttcatagtgacatcaatgaatttggtgtcatcattaacaaatgtagatccattctcaac |
119 |
Q |
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| T |
31042052 |
actagtgttactgttaatagatatggaatgtcaacttgtagttcatagtgacatcaatgaatttggtgtcatcattaacaaatgtagatccattctcaac |
31041953 |
T |
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| Q |
120 |
actag--nnnnnnnnntataaagcttgaaagaacctttttatagctgtctttttcaaggtgttcaccatagtgacattgtc |
198 |
Q |
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| T |
31041952 |
tctagaaaaaaaaatatataaagcttgaaagaacctttttatagctgtctttttcaaggtgttcaccatagtgacattgtc |
31041872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 31068767 - 31068640
Alignment:
| Q |
71 |
catcaatgaatttggtgtcatcattaacaaatgtagatccattctcaacactagnnnnnnnnn---tataaagcttgaaagaacctttttatagctgtct |
167 |
Q |
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| T |
31068767 |
catcaatgaatttggtgtcgtcattaacaaatgtagatccattcttaacaccagaaagaaaaaacatataaagcttgaaagaacctttttatagccgtct |
31068668 |
T |
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| Q |
168 |
ttttcaaggtgttcaccatagtgacatt |
195 |
Q |
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| T |
31068667 |
ttttcaaggtgttcgccatagtgacatt |
31068640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 31068818 - 31068785
Alignment:
| Q |
36 |
atagaaatggaatgtcaacttgtagttcatagtg |
69 |
Q |
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| T |
31068818 |
atagaaatggaatgtcaacatgtagttcatagtg |
31068785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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