View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3554_low_55 (Length: 210)
Name: NF3554_low_55
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 10413988 - 10414167
Alignment:
| Q |
16 |
tgaagcatgaaaattaaaccaaaatggatcccaatccttgaagtaacgagcaactattgctcccattatgataaagataccccatcccaatatattcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10413988 |
tgaagcatgaaaattaaaccaaaatggatcccaatccttgaagtaacgagcaactattgctcccattatgataaagataccccatcccaatatattcaac |
10414087 |
T |
|
| Q |
116 |
acaccatggcttctttttaggttcatagatgagtttcctaatacacttgaacctgtttcaaatgaaataatccatatatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10414088 |
acaccatggcttctttttaggttcatagatgagtttcctaatacacttgaacctgtttcaaatgaaataatccatatatt |
10414167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University