View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_low_6 (Length: 511)
Name: NF3554_low_6
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_low_6 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 211 - 495
Target Start/End: Original strand, 4720878 - 4721158
Alignment:
| Q |
211 |
aaaaaagaatacgtgaaaatgatcaagacttgcccctatcaacagcagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac |
310 |
Q |
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| T |
4720878 |
aaaaaataatacgtgaaaatgatcaagacttgcccctatcaacaacagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac |
4720977 |
T |
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| Q |
311 |
cggcataaggccaagtgtgaatgaatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtatt |
410 |
Q |
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| T |
4720978 |
cggcataaggccaagtgtgaa----tatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtatt |
4721073 |
T |
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| Q |
411 |
gcagtgctggagcgcgtcaggattaatcctagccatcagaatcatctctaaccgctttcaaaacctagaggcagttatcaacata |
495 |
Q |
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| T |
4721074 |
gcagtgctggagcgcgtcaggattaatcctagccgtcagaatcatctctagcggctttcaaaacctagaggcagttatcaacata |
4721158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 4720377 - 4720484
Alignment:
| Q |
110 |
tttgatggttaactactgaggga-tatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaatttttcaattgttatttggtcc |
208 |
Q |
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| T |
4720377 |
tttggtggttaactaccgagggggtatttatgtattttactggtgtttttcaacctttatgttaagtgtcaacaacaattttccaattgttatttggtcc |
4720476 |
T |
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| Q |
209 |
ataaaaaa |
216 |
Q |
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| T |
4720477 |
ataaaaaa |
4720484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 22494873 - 22494815
Alignment:
| Q |
131 |
gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaatttt |
190 |
Q |
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| T |
22494873 |
gatatttacgtattttactggtgtttttcagcc-ttctgttaagtgtcaacaacaatttt |
22494815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 9428940 - 9428882
Alignment:
| Q |
131 |
gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaatttt |
190 |
Q |
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| T |
9428940 |
gatatttgcgtattttattggtgtttttcaacc-ttatgtgaagtgtcaacaacaatttt |
9428882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 251417 - 251462
Alignment:
| Q |
60 |
aaactgatatgaaaatgatgcttctatttttgtataaaggacgcat |
105 |
Q |
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| T |
251417 |
aaactgatatgaaactgatgcttatgtttatgtataaaggacgcat |
251462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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