View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_low_8 (Length: 506)

Name: NF3554_low_8
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_low_8
NF3554_low_8
[»] chr4 (3 HSPs)
chr4 (171-363)||(14207861-14208053)
chr4 (1-95)||(14207691-14207785)
chr4 (452-488)||(14208146-14208182)
[»] chr2 (3 HSPs)
chr2 (171-363)||(31408079-31408271)
chr2 (1-95)||(31407909-31408003)
chr2 (452-488)||(31408364-31408400)
[»] chr8 (1 HSPs)
chr8 (5-94)||(36243538-36243626)
[»] chr3 (1 HSPs)
chr3 (5-90)||(14956636-14956721)
[»] chr6 (2 HSPs)
chr6 (49-94)||(13154398-13154443)
chr6 (49-94)||(13159254-13159299)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 171 - 363
Target Start/End: Original strand, 14207861 - 14208053
Alignment:
Q  171 caactcactccatattaggactcgagcatctgtaagcaatcaccaccgcaaaaactgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14207861 caactcactccatattaggactcgagcatctgtaagcaatcaccaccgcaaaaaccgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 14207960  T
Q  271 taatgatagtctttggctgcgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaaccataatct 363  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14207961 taatgatagtctttggctacgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaaccgtaatct 14208053  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14207691 - 14207785
Alignment:
Q  1 aattcctatatctaaattctaaaacacacggttgtaacnnnnnnnggtcatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 95  Q
    ||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||    
T  14207691 aattcctatatctaaattctaaaacacacggttgtaacaaaaaaaggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 14207785  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 14208146 - 14208182
Alignment:
Q  452 cttttttctccagagtttcatgtgaagtatttgttat 488  Q
    |||||||||||||||||||||||||||||||||||||    
T  14208146 cttttttctccagagtttcatgtgaagtatttgttat 14208182  T

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Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 171 - 363
Target Start/End: Original strand, 31408079 - 31408271
Alignment:
Q  171 caactcactccatattaggactcgagcatctgtaagcaatcaccaccgcaaaaactgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 270  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31408079 caactcactccatattaggactagagcatctgtaagcaatcaccaccgcaaaaaccgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 31408178  T
Q  271 taatgatagtctttggctgcgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaaccataatct 363  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31408179 taatgatagtctttggctacgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaaccgtaatct 31408271  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31407909 - 31408003
Alignment:
Q  1 aattcctatatctaaattctaaaacacacggttgtaacnnnnnnnggtcatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 95  Q
    ||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||    
T  31407909 aattcctatatctaaattctaaaacacacggttgtaacaaaaaaaggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 31408003  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 31408364 - 31408400
Alignment:
Q  452 cttttttctccagagtttcatgtgaagtatttgttat 488  Q
    |||||||||||||||||||||||||||||||||||||    
T  31408364 cttttttctccagagtttcatgtgaagtatttgttat 31408400  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 36243538 - 36243626
Alignment:
Q  5 cctatatctaaattctaaaacacacggttgtaacnnnnnnnggtcatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatg 94  Q
    |||| ||||||||||||||||||||  |||||||       || |||||||||||||||||||| |||| ||||||||||||||||||||    
T  36243538 cctaaatctaaattctaaaacacacatttgtaacacgaaaagggcatgagtgttgaaagtgaaa-tcaatgaggcattcaatcaaacatg 36243626  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 14956636 - 14956721
Alignment:
Q  5 cctatatctaaattctaaaacacacggttgtaacnnnnnnnggtcatgagtgttgaaagtgaaattcaaagaggcattcaatcaaa 90  Q
    |||| ||||||||||||||||||||  |||||||       || |||||||||||||||||||| |||| ||| ||||||||||||    
T  14956636 cctaaatctaaattctaaaacacacatttgtaacgcaaaaagggcatgagtgttgaaagtgaaaatcaatgagacattcaatcaaa 14956721  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 13154398 - 13154443
Alignment:
Q  49 catgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatg 94  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||    
T  13154398 catgagcgttgaaagtgaaatccaatgaggcattcaatcaaacatg 13154443  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 13159254 - 13159299
Alignment:
Q  49 catgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatg 94  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||    
T  13159254 catgagcgttgaaagtgaaatccaatgaggcattcaatcaaacatg 13159299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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