View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3555_high_1 (Length: 663)

Name: NF3555_high_1
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3555_high_1
NF3555_high_1
[»] chr1 (30 HSPs)
chr1 (1-652)||(17055910-17056550)
chr1 (86-210)||(19009942-19010066)
chr1 (86-221)||(41032666-41032801)
chr1 (86-219)||(13276262-13276395)
chr1 (93-222)||(21846271-21846400)
chr1 (86-210)||(12513290-12513414)
chr1 (87-210)||(16125452-16125578)
chr1 (86-223)||(9327211-9327348)
chr1 (86-221)||(9955031-9955166)
chr1 (86-199)||(23528676-23528789)
chr1 (86-199)||(13100211-13100324)
chr1 (86-199)||(42180061-42180174)
chr1 (86-220)||(18304807-18304941)
chr1 (144-219)||(30619075-30619150)
chr1 (86-220)||(9352059-9352193)
chr1 (134-220)||(25146812-25146898)
chr1 (536-652)||(22597027-22597143)
chr1 (86-219)||(9128836-9128969)
chr1 (296-359)||(22596694-22596757)
chr1 (6-88)||(18891592-18891674)
chr1 (125-199)||(14074405-14074479)
chr1 (86-183)||(17869746-17869843)
chr1 (135-193)||(18337567-18337625)
chr1 (7-88)||(27917368-27917449)
chr1 (138-199)||(12800629-12800690)
chr1 (154-199)||(18228232-18228277)
chr1 (26-86)||(18337458-18337517)
chr1 (115-210)||(27917477-27917572)
chr1 (153-220)||(34478833-34478900)
chr1 (86-132)||(32881414-32881460)
[»] chr2 (26 HSPs)
chr2 (1-213)||(25539138-25539349)
chr2 (1-191)||(19491885-19492068)
chr2 (86-222)||(31237973-31238109)
chr2 (86-221)||(30432417-30432552)
chr2 (90-220)||(23863321-23863451)
chr2 (86-221)||(36429846-36429981)
chr2 (86-222)||(1404780-1404916)
chr2 (87-210)||(31578014-31578136)
chr2 (86-220)||(20063713-20063847)
chr2 (83-196)||(15588843-15588956)
chr2 (1-82)||(27406848-27406927)
chr2 (86-199)||(35565950-35566063)
chr2 (149-222)||(17995052-17995125)
chr2 (9-88)||(15627792-15627872)
chr2 (112-199)||(1690784-1690871)
chr2 (120-199)||(16766730-16766809)
chr2 (6-85)||(31023357-31023434)
chr2 (117-183)||(31023259-31023325)
chr2 (142-222)||(15266079-15266159)
chr2 (115-190)||(13503067-13503142)
chr2 (116-198)||(5395674-5395756)
chr2 (6-82)||(13502962-13503036)
chr2 (134-183)||(34841592-34841641)
chr2 (86-130)||(1690724-1690768)
chr2 (1-83)||(5395515-5395596)
chr2 (149-210)||(27406786-27406849)
[»] chr4 (29 HSPs)
chr4 (1-197)||(8011129-8011323)
chr4 (86-220)||(5361959-5362093)
chr4 (86-220)||(36120823-36120957)
chr4 (86-210)||(8889237-8889361)
chr4 (86-219)||(9770112-9770245)
chr4 (86-199)||(17466099-17466212)
chr4 (86-221)||(13551618-13551753)
chr4 (86-209)||(9911407-9911531)
chr4 (86-221)||(23064959-23065094)
chr4 (7-86)||(4156906-4156983)
chr4 (86-198)||(5375685-5375797)
chr4 (115-210)||(7044736-7044831)
chr4 (1-88)||(18459609-18459695)
chr4 (17-88)||(6346992-6347062)
chr4 (86-221)||(10142897-10143032)
chr4 (11-86)||(24719650-24719725)
chr4 (115-220)||(18459733-18459838)
chr4 (87-220)||(13023566-13023702)
chr4 (140-199)||(6347114-6347173)
chr4 (139-221)||(7452418-7452499)
chr4 (1-86)||(7803140-7803232)
chr4 (1-86)||(7825094-7825186)
chr4 (134-222)||(24719514-24719602)
chr4 (116-219)||(4156763-4156866)
chr4 (115-213)||(7815563-7815661)
chr4 (6-86)||(7452563-7452641)
chr4 (1-86)||(7815691-7815783)
chr4 (7-82)||(10394658-10394733)
chr4 (115-164)||(10394565-10394614)
[»] chr3 (24 HSPs)
chr3 (7-219)||(24649606-24649818)
chr3 (86-221)||(28745768-28745903)
chr3 (86-219)||(20756039-20756172)
chr3 (86-220)||(29067283-29067417)
chr3 (1-209)||(10872857-10873065)
chr3 (86-210)||(3449288-3449411)
chr3 (86-210)||(17064330-17064454)
chr3 (94-212)||(21963436-21963554)
chr3 (94-212)||(21985872-21985990)
chr3 (86-210)||(39427911-39428035)
chr3 (89-199)||(22494780-22494890)
chr3 (93-210)||(30727694-30727811)
chr3 (86-220)||(8156126-8156261)
chr3 (94-212)||(22137285-22137403)
chr3 (86-221)||(24620196-24620334)
chr3 (86-199)||(22356048-22356162)
chr3 (86-224)||(25870363-25870510)
chr3 (134-220)||(27676355-27676441)
chr3 (7-86)||(17796620-17796699)
chr3 (7-86)||(19105060-19105139)
chr3 (134-220)||(15806550-15806635)
chr3 (86-146)||(42696920-42696980)
chr3 (117-202)||(28135739-28135824)
chr3 (6-65)||(27676511-27676568)
[»] chr6 (28 HSPs)
chr6 (86-219)||(17250057-17250190)
chr6 (86-222)||(17543736-17543872)
chr6 (86-220)||(23897810-23897944)
chr6 (86-220)||(30912408-30912542)
chr6 (86-219)||(15528106-15528239)
chr6 (94-221)||(6943464-6943591)
chr6 (86-199)||(27233273-27233386)
chr6 (86-210)||(19748342-19748466)
chr6 (86-219)||(26053292-26053425)
chr6 (86-219)||(26073345-26073478)
chr6 (1-101)||(3573883-3573982)
chr6 (86-220)||(7223518-7223645)
chr6 (87-219)||(7918378-7918510)
chr6 (87-210)||(2912245-2912367)
chr6 (86-197)||(22498881-22498992)
chr6 (86-220)||(11327567-11327701)
chr6 (86-222)||(17103199-17103328)
chr6 (90-210)||(10509023-10509143)
chr6 (134-210)||(18491081-18491157)
chr6 (17-88)||(4841836-4841906)
chr6 (142-199)||(3573984-3574041)
chr6 (140-220)||(5422798-5422878)
chr6 (86-170)||(21354789-21354873)
chr6 (134-200)||(4841963-4842027)
chr6 (157-220)||(12245108-12245171)
chr6 (7-70)||(18490792-18490854)
chr6 (134-192)||(18491005-18491063)
chr6 (6-34)||(31407397-31407425)
[»] chr5 (17 HSPs)
chr5 (86-199)||(19578962-19579075)
chr5 (86-222)||(18051526-18051662)
chr5 (86-199)||(43234888-43235001)
chr5 (86-220)||(21059152-21059285)
chr5 (94-219)||(20923718-20923843)
chr5 (86-199)||(41688661-41688773)
chr5 (86-220)||(22645715-22645849)
chr5 (86-218)||(18843716-18843848)
chr5 (93-210)||(27340189-27340306)
chr5 (86-199)||(38158250-38158363)
chr5 (10-88)||(43005862-43005940)
chr5 (134-210)||(23172476-23172552)
chr5 (86-170)||(19979648-19979732)
chr5 (1-59)||(24648095-24648153)
chr5 (149-210)||(24106650-24106711)
chr5 (41-86)||(26021408-26021453)
chr5 (88-174)||(20320988-20321074)
[»] scaffold0186 (1 HSPs)
scaffold0186 (86-222)||(8440-8576)
[»] chr7 (35 HSPs)
chr7 (90-220)||(14055250-14055380)
chr7 (90-220)||(14365278-14365408)
chr7 (86-220)||(27221417-27221551)
chr7 (86-210)||(5058538-5058662)
chr7 (86-220)||(26281306-26281439)
chr7 (86-210)||(39182269-39182392)
chr7 (86-220)||(7730339-7730472)
chr7 (86-199)||(11326406-11326519)
chr7 (86-198)||(8343796-8343908)
chr7 (86-210)||(11324988-11325111)
chr7 (79-219)||(22687653-22687793)
chr7 (86-222)||(24725473-24725609)
chr7 (539-651)||(47335590-47335702)
chr7 (87-222)||(8330042-8330177)
chr7 (86-210)||(8346529-8346653)
chr7 (95-210)||(8571252-8571367)
chr7 (86-221)||(9685240-9685375)
chr7 (86-181)||(17811385-17811480)
chr7 (86-219)||(5715290-5715422)
chr7 (86-199)||(24990067-24990180)
chr7 (86-199)||(27509939-27510052)
chr7 (86-219)||(44944841-44944978)
chr7 (86-219)||(4247356-4247489)
chr7 (536-644)||(47337811-47337923)
chr7 (97-219)||(21846433-21846554)
chr7 (86-179)||(1977692-1977785)
chr7 (8-88)||(21157682-21157761)
chr7 (1-88)||(26565540-26565625)
chr7 (1-88)||(30294304-30294390)
chr7 (90-210)||(26617472-26617596)
chr7 (116-199)||(30294195-30294275)
chr7 (1-69)||(24915796-24915863)
chr7 (132-210)||(4574480-4574558)
chr7 (127-222)||(8629995-8630090)
chr7 (77-143)||(20570872-20570938)
[»] chr8 (22 HSPs)
chr8 (87-199)||(3094250-3094362)
chr8 (86-220)||(5922048-5922182)
chr8 (86-223)||(15294666-15294803)
chr8 (86-223)||(15475035-15475172)
chr8 (86-199)||(22910198-22910311)
chr8 (86-222)||(11879597-11879733)
chr8 (86-222)||(11897013-11897149)
chr8 (86-210)||(31424172-31424296)
chr8 (88-199)||(45403049-45403160)
chr8 (83-180)||(6810861-6810957)
chr8 (86-199)||(19704451-19704565)
chr8 (86-210)||(29384313-29384436)
chr8 (86-195)||(27836460-27836569)
chr8 (86-199)||(17647013-17647126)
chr8 (86-171)||(23142223-23142308)
chr8 (151-220)||(477108-477177)
chr8 (140-210)||(24056618-24056688)
chr8 (114-211)||(15231732-15231829)
chr8 (40-86)||(15761390-15761436)
chr8 (140-220)||(15761489-15761569)
chr8 (128-199)||(7489325-7489393)
chr8 (86-135)||(9212251-9212300)
[»] scaffold0042 (1 HSPs)
scaffold0042 (86-220)||(93702-93834)
[»] scaffold0510 (1 HSPs)
scaffold0510 (86-220)||(96-231)
[»] scaffold0417 (1 HSPs)
scaffold0417 (86-220)||(7451-7585)
[»] scaffold0603 (1 HSPs)
scaffold0603 (140-222)||(9070-9152)
[»] scaffold0048 (3 HSPs)
scaffold0048 (1-88)||(48690-48776)
scaffold0048 (141-220)||(48839-48918)
scaffold0048 (21-88)||(61304-61370)
[»] scaffold0036 (1 HSPs)
scaffold0036 (115-220)||(37191-37296)


Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 652
Target Start/End: Original strand, 17055910 - 17056550
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 100  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17055910 aaagtccacaaaatacttatacataaatgactaacaaaaatcgacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 17056009  T
Q  101 caaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaa 200  Q
    ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  17056010 caatcaaaatcgatggattttacttattttaaaattctactatggatctgagtcgttgaaggtggagaaaattgcaaaatcctggattttaggatttaaa 17056109  T
Q  201 tcaggattttaactacaatgatgtcaatacaaaccatttatctgtgcttgagaccggagtcatctctaattataaattcgctcagtgatagcctaatctt 300  Q
    |||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  17056110 tcaggattttgactacaatgatgtcaatacaagcgatttatttgtgcttgagaccggagtcatctctaattataaattcgcttagtgatagcctaatttt 17056209  T
Q  301 taagcaaaggtaaaaaatgctctaccctattgcaggatatggattaattggttgatatgcagtttgtgaaa--ctcaatttgtatatataggaatttttc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  17056210 taagcaaaggtaaaaaatgctctaccctattgcaggatatggattaattggttgatatgcagtttgtgaaactctcaatttgtatatataggaatttttc 17056309  T
Q  399 acagaaagaatagttgccttttttagcaatttagactattgttcacaaccagaggaaaataaatgaacattttgtgtcttgtatccaacaaatacaaata 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||    
T  17056310 acagaaagaatagttgccttttttagcaatttagactattgttcacaaccagaggaaaataaatgaacat----------------aacaaatacaaata 17056393  T
Q  499 acttgtcctcc---ctaccataaactactagaggctaatgagcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaa 595  Q
    |||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17056394 acttgtcctcctatctaccataaactactagaggctaattagcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaa 17056493  T
Q  596 ctgattggaaatcattggaacatcttcctcttcgatcaagcatccttcattcatctc 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17056494 ctgattggaaatcattggaacatcttcctcttcgatcaagcatccttcattcatctc 17056550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 19009942 - 19010066
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||| | |||| ||||||||||| ||| |||||||||||||     
T  19009942 gaaatcgtaaaatcgcaatcaaaatcgatggattttgcttattttagaattttactatggatttaagtcattgaaggtgaaaaaagtcgcaaaatcctga 19010041  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||||||||||| || |||||||    
T  19010042 attttaggatttaagtccggatttt 19010066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 41032666 - 41032801
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| ||||||||||||  |||||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  41032666 gaaattgtaaaatcgcaattaaaatcgatggattttgcctattttagaattctactatggatttgagtcgttgaaggtgaagaaaatcgcaaaatcctga 41032765  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    ||| || ||||||| ||  |||||| || |||||||    
T  41032766 attctacgatttaagtcgagattttgacaacaatga 41032801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 13276262 - 13276395
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| || |||||||| |||||||  |||||||||||||| |  |||||||||| |||||||| |||||||||||| |    
T  13276262 gaaatcgtaaaatcgcaatcaaaatcgattgattttgcctattttaggattctactatggatttaggtcgttgaagatgaagaaagtcgcaaaatcctag 13276361  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    ||||||||||||||||| ||||||| || |||||    
T  13276362 attttaggatttaaatcgggattttgacaacaat 13276395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 21846271 - 21846400
Alignment:
Q  93 taaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttag 192  Q
    ||||||||||| ||||||| |||||||||   |||||| | |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||    
T  21846271 taaaatcgcaatcaaaatcgatggattttttctattttgagattctactatggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctggattttag 21846370  T
Q  193 gatttaaatcaggattttaactacaatgat 222  Q
    ||||||| || ||||||| || ||||||||    
T  21846371 gatttaactcgggattttgacaacaatgat 21846400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 12513414 - 12513290
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||  ||| |||||||||| ||||||||||||| |||||||| |||||||||||| |    
T  12513414 gaaatcgtaaaatcgcaatcaaaatcgatggattttgattattttatgattttactatggatttgagtcgttgaagctgaagaaagtcgcaaaatcctag 12513315  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||| |||||||||| || |||||||    
T  12513314 attgtaggatttaagtcgggatttt 12513290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 16125452 - 16125578
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtg---aagaaaatcgcaaaatcct 183  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||| |  |||||||||||||   |||||| ||||||||||||    
T  16125452 aaatcgtaaaatcgcaatcaaaatcaatggattttgcctattttaagattttactatggatttaggtcgttgaaggtgaaaaagaaagtcgcaaaatcct 16125551  T
Q  184 ggattttaggatttaaatcaggatttt 210  Q
    | |||||||||||||| ||||||||||    
T  16125552 gaattttaggatttaagtcaggatttt 16125578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 9327211 - 9327348
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||||||||  ||||||   ||| |||||| ||| |||||||||||||||| ||||| |||||||| |||      
T  9327211 gaaatcgtaaaatcgcaatcaaaatcgatggattttgtctattttgggattttactatagatttgagtcgttgaaggtgtagaaagtcgcaaaaccctaa 9327310  T
Q  186 attttaggatttaaatcaggattttaactacaatgatg 223  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  9327311 attttaggatttaagtcaggattttaacaacaatgatg 9327348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 9955031 - 9955166
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||   |||||||  ||||| | |||||||||||||||||||| ||||||||||||      
T  9955031 gaaatcgtaaaatcgcaatcaaaatcgatggattttgcttattttgggattctacattggatttaagtcgttgaaggtgaagaaagtcgcaaaatcctaa 9955130  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    |||||||||||||| |  ||||||| || |||||||    
T  9955131 attttaggatttaagttgggattttgacaacaatga 9955166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 23528789 - 23528676
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||  ||||||| || |||||||| |||||||  |||||||||||||| ||||||||||||| |||||||| |||||||||||||     
T  23528789 gaaatcgtaaaatcgcattcaaaatcgatagattttgcctattttaggattctactatggatttgagtcgttgaagatgaagaaagtcgcaaaatcctga 23528690  T
Q  186 attttaggatttaa 199  Q
    |||||| |||||||    
T  23528689 attttaagatttaa 23528676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 13100324 - 13100211
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||| |||| |||||| |||||||  |||||||||||||| |||||||||||| ||||||||| ||| |||||||| |    
T  13100324 gaaattgtaaaatcgcaatcaaaatcgatggtttttgcctattttaggattctactatggatttgagtcgttgaacgtgaagaaagtcgtaaaatcctcg 13100225  T
Q  186 attttaggatttaa 199  Q
    ||||||| ||||||    
T  13100224 attttagaatttaa 13100211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 42180061 - 42180174
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||| |||| ||| ||||||| ||| ||||||| |||||| |||||||||||||||| ||| |||||||||| ||||||| |||||||||||||     
T  42180061 gaaatcgtagaatcacaatcaaaatcgatgtattttgcctattttgaaattctactatggatttgactcgttgaaggggaagaaagtcgcaaaatcctga 42180160  T
Q  186 attttaggatttaa 199  Q
    ||||||| ||||||    
T  42180161 attttagaatttaa 42180174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 18304807 - 18304941
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgtt-gaaggtgaagaaaatcgcaaaatcctg 184  Q
    ||||||||||| |||||| ||||||  ||||||||||  |||||| | ||||||||||| || ||||||||| ||||||||||||| ||||||||| |||    
T  18304807 gaaatcgtaaa-tcgcaatcaaaattgatggattttgtctattttgagattctactatgaatttgagtcgtttgaaggtgaagaaagtcgcaaaatactg 18304905  T
Q  185 gattttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||||||||||| |  ||||||| || ||||||    
T  18304906 gattttaggatttaagttgggattttgacaacaatg 18304941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 30619150 - 30619075
Alignment:
Q  144 ggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaat 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||    
T  30619150 ggatttgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaacaat 30619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 9352059 - 9352193
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||| ||||||||||| ||||||| | ||||||||  ||||||   | ||| |||| ||| |||||| ||||||||||||||| |||||||| |||||    
T  9352059 gaaatcataaaatcgcaatcaaaatcgacggattttgtctattttgggactctgctatagatttgagtctttgaaggtgaagaaagtcgcaaaaccctgg 9352158  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || ||||||| || ||||||    
T  9352159 attttaggatttaagtcgggattttgacaacaatg 9352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 25146812 - 25146898
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| || ||||||    
T  25146812 attctactatgaatttgagtcgttgaaggtgaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaacaatg 25146898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 536 - 652
Target Start/End: Original strand, 22597027 - 22597143
Alignment:
Q  536 agcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatcattggaacatcttcctcttcgatcaag 635  Q
    ||||||||||||||||||||| ||||| ||| |||| ||| | ||||| || | || ||||| ||||| ||||||| |||| ||||||||||| | ||||    
T  22597027 agcaatatttgctactatttattttatgttagtattatccaataataactcttcatgaaacttattgggaatcatttgaacctcttcctcttctaacaag 22597126  T
Q  636 catccttcattcatctc 652  Q
    |||||||||||||||||    
T  22597127 catccttcattcatctc 22597143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 9128836 - 9128969
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||| ||||||||| ||||||| ||| ||||||  |||||||| ||||||||||  || ||||||||| || ||||||||| |||||| |||||      
T  9128836 gaaatcgtcaaatcgcaatcaaaatcgatgaattttgtctattttaagattctactataaatttgagtcgttaaatgtgaagaaagtcgcaagatcctaa 9128935  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
     ||||||||||||| ||  ||||||||| |||||    
T  9128936 tttttaggatttaagtcgtgattttaacaacaat 9128969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 22596694 - 22596757
Alignment:
Q  296 atctttaagcaaaggtaaaaaatgctctaccctattgcaggatatggattaattggttgatatg 359  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  22596694 atctttaagcagaggtacaaaatgctctaccctattgcaggatatggacgaattggttgatatg 22596757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 18891592 - 18891674
Alignment:
Q  6 ccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||||||||||||||||||||||| |||| ||| |||||||| |  |||||||||||||||||||| ||| |||| |||||||    
T  18891592 ccacaaaatacttatacataaatggctaaaaaaaatggacaatagacttcaaaaccctttaaaatcgtgcaatttcgtatgaa 18891674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 14074405 - 14074479
Alignment:
Q  125 tattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||||||| |||||||| ||||| ||||||||||||  |||||||| ||||||||||||  ||||||||||||||    
T  14074405 tattttaagattctactctggatttgagtcgttgaacatgaagaaagtcgcaaaatcctacattttaggatttaa 14074479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 17869746 - 17869843
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcct 183  Q
    ||||||||||||| |||| ||||||| | | ||||||| |||||||  |||||||| ||||| |  ||||| ||||||||||||| ||||||||||||    
T  17869746 gaaatcgtaaaattgcaatcaaaatcgaagaattttgcctattttaggattctactgtggatttaggtcgtcgaaggtgaagaaagtcgcaaaatcct 17869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 18337567 - 18337625
Alignment:
Q  135 ttctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagg 193  Q
    |||| |||||||| |||||||||||||||||| ||| | ||||||||||||||||||||    
T  18337567 ttctgctatggatttgagtcgttgaaggtgaataaagttgcaaaatcctggattttagg 18337625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 27917368 - 27917449
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    ||||||||||||||||||||||||||||  || ||| | || || || ||||||||||||||||| | | ||||||||||||    
T  27917368 cacaaaatacttatacataaatgactaaacaaaatgtaaaacatcctccaaaaccctttaaaatcctccaattttgtatgaa 27917449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 12800629 - 12800690
Alignment:
Q  138 tactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||||| ||| |||||||||||| ||||||||| ||| ||||||||  ||||||||||||||    
T  12800629 tactatagatttgagtcgttgaatgtgaagaaagtcgtaaaatcctaaattttaggatttaa 12800690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 18228277 - 18228232
Alignment:
Q  154 cgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||    
T  18228277 cgttgaaggtgatgaaaatcgtaaaatcttggattttaggatttaa 18228232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 18337458 - 18337517
Alignment:
Q  26 aatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    ||||||||| ||| ||||||||||||| |||| ||||||||||||| | ||||||||||||    
T  18337458 aatgactaaaaaa-atggacaaaattcatcaagaccctttaaaatcctacgattttgtatg 18337517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 27917477 - 27917572
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    ||||||||||||| ||   ||||| ||||| || || || ||||||||| || |||||||||||||||| ||||| || |||||| || |||||||    
T  27917477 ggattttgcttatcttgtgattctgctatgaatttgggttgttgaaggtaaataaaatcgcaaaatcctagatttcagaatttaagtcgggatttt 27917572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 34478833 - 34478900
Alignment:
Q  153 tcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||||||| || ||||||||   |||||| ||||||| || |||||||||| ||||||    
T  34478833 tcgttgaaggtgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaatg 34478900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 32881460 - 32881414
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaa 132  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||||||||    
T  32881460 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcctattttaa 32881414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 25539138 - 25539349
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 100  Q
    |||| |||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  25539138 aaagtccacaaaatacttataaataaatgactaaaaaa-atggacaaaattctacaaaaccctttaaaatcctgcgattttgtatgaaatcgttaaatcg 25539236  T
Q  101 caaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaa 200  Q
    ||  ||||||| ||||||||||||||||||   ||||| |||||||| | |||||||||||||||||||||| ||||| || || |||||||||||||||    
T  25539237 cagtcaaaatcgatggattttgcttattttcggattctcctatggatttaagtcgttgaaggtgaagaaaattgcaaattcttgaattttaggatttaaa 25539336  T
Q  201 tcaggattttaac 213  Q
    || ||||||||||    
T  25539337 tcgggattttaac 25539349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 19492068 - 19491885
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 100  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||     ||||||||    
T  19492068 aaagtccacagaatacttatacataaatgactaacaaa-atggataaaattcttcaaaaccctttaaaatcctgcgattttgtatga-----taaaatcg 19491975  T
Q  101 caaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggatttta 191  Q
    ||| ||||||| ||||||||| | ||||||   ||||| |||||||| ||||||||| ||| |||||||| |||||||||||| |||||||    
T  19491974 caatcaaaatcgatggattttacctatttt-ggattctgctatggatttgagtcgtttaagatgaagaaagtcgcaaaatcctagatttta 19491885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 31237973 - 31238109
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||||||| | |||||||| ||||||||||| || |||||||||||||||||||||| | |||||||||| |    
T  31237973 gaaatcgtaaaatcgcaatcaaaatcgatggatttttcctattttaagattctactatgaatttgagtcgttgaaggtgaagaaagtggcaaaatcctag 31238072  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| || ||||||| || ||||||||    
T  31238073 attttaggatttaagtcgggattttgacaacaatgat 31238109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 30432552 - 30432417
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||| |||| ||||||| ||||||||||  |||||| | |||||||||||||| |||||||||||||| ||||||| ||| |||||||| |    
T  30432552 gaaatcgtaaaattgcaatcaaaatcgatggattttgtctattttgagattctactatggatttgagtcgttgaaggcgaagaaagtcgaaaaatcctag 30432453  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    ||||||| ||||||||||||||||| || |||||||    
T  30432452 attttagaatttaaatcaggattttgacaacaatga 30432417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 23863321 - 23863451
Alignment:
Q  90 tcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattt 189  Q
    |||||||||||||| ||||||| ||||||||||| |||||| | |||||||||||||| | |||||||||| ||||||||| ||||||||| || |||||    
T  23863321 tcgtaaaatcgcaaccaaaatcgatggattttgcctattttgagattctactatggatttcagtcgttgaaagtgaagaaagtcgcaaaattctcgattt 23863420  T
Q  190 taggatttaaatcaggattttaactacaatg 220  Q
    ||| |||||| || ||||||| || ||||||    
T  23863421 tagaatttaagtcgggattttgacaacaatg 23863451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 36429981 - 36429846
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||||| | ||||| ||||| |  |||||||||||||||||||||| |||||||||||| |    
T  36429981 gaaatcgtacaatcgcaatcaaaatcgatggattttgcctattttgagattctcctatgaacttgagtcgttgaaggtgaagaaagtcgcaaaatcctag 36429882  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    ||| |||||||||| |  ||||||| || |||||||    
T  36429881 attataggatttaagttgggattttgacaacaatga 36429846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 1404916 - 1404780
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||||||||||| || ||||  ||||||| |||||| | |||||||||||||||||||| || |||||||||      
T  1404916 gaaatcgtaaaatcacaatcaaaatcgatggattttgcatagtttaggattctacaatggatttaagtcgttgaaggtgaagaaagtcacaaaatcctaa 1404817  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    ||||||| |||||| || ||||||| || ||||||||    
T  1404816 attttagaatttaagtcgggattttgacaacaatgat 1404780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 31578136 - 31578014
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgga 186  Q
    |||||||||||| |||| ||||||  |||||||||||||||||||  ||||||||| |||| | | ||||||||||||||||||||||||||||| |  |    
T  31578136 aaatcgtaaaattgcaatcaaaattgatggattttgcttattttaggattctacta-ggatttaaatcgttgaaggtgaagaaaatcgcaaaatcttaaa 31578038  T
Q  187 ttttaggatttaaatcaggatttt 210  Q
    |||||  |||||| || |||||||    
T  31578037 ttttaacatttaagtcgggatttt 31578014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 20063847 - 20063713
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||| |||||||||||||  |||||| ||| ||||||| ||||||   |||||||||||||| | |||| |||||| ||||||||| ||||||| | |||    
T  20063847 gaaaacgtaaaatcgcaattaaaatcgatgaattttgcctattttgggattctactatggatttaagtccttgaagatgaagaaaaccgcaaaaccttgg 20063748  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||| ||||| || ||||||| || ||||||    
T  20063747 attttaggttttaagtcgggattttgacaacaatg 20063713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 15588843 - 15588956
Alignment:
Q  83 tatgaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcc 182  Q
    |||||||||||||||||||||  |||| | || |||||||  |||||| | ||||||||||| || ||||| ||||||||||||||||  ||||||||||    
T  15588843 tatgaaatcgtaaaatcgcaataaaaaacgattgattttgtctattttgagattctactatgtatttgagttgttgaaggtgaagaaagacgcaaaatcc 15588942  T
Q  183 tggattttaggatt 196  Q
    || |||||| ||||    
T  15588943 tgaattttaagatt 15588956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27406927 - 27406848
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttg 82  Q
    |||| ||||||||||| ||||||||||||||||   || | |||||||||||||||||||||||||||||| ||||||||||    
T  27406927 aaagtccacaaaatacatatacataaatgactac--aataaggacaaaattcttcaaaaccctttaaaatcatgcgattttg 27406848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 35565950 - 35566063
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||  |||| ||||||| ||||||||||| ||||||   ||||||| |||||| |||||| |||||  |||||||| |||||||||||||     
T  35565950 gaaatcgtaaaactgcaatcaaaatcgatggattttgcctattttgggattctaccatggatttgagtcattgaatatgaagaaagtcgcaaaatcctga 35566049  T
Q  186 attttaggatttaa 199  Q
    |||||  |||||||    
T  35566050 attttgtgatttaa 35566063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 17995125 - 17995052
Alignment:
Q  149 tgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatgat 222  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||| ||||| || | |||||||| ||||||||    
T  17995125 tgagtcgttgatggtgaataaaatcgcaaaattctggattttaggttttaagtcggaattttaacaacaatgat 17995052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 15627872 - 15627792
Alignment:
Q  9 caaaatacttatacataaatgactaacaaaga-tggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    ||||||||||||| |||||||||||| ||| | |||||||||| |||  ||||||||||||||| || |||||||||||||    
T  15627872 caaaatacttatatataaatgactaaaaaaaaatggacaaaatcctttgaaaccctttaaaatcctgtgattttgtatgaa 15627792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 1690784 - 1690871
Alignment:
Q  112 aatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    ||||| |||||| ||||||   ||| ||||||||||||||||||| ||||||||||||| || |||||||||  |||||| |||||||    
T  1690784 aatgggttttgcctattttgggattttactatggatctgagtcgtcgaaggtgaagaaagtcacaaaatcctaaattttaagatttaa 1690871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 16766809 - 16766730
Alignment:
Q  120 ttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    ||||||||||||  ||||| |||||||| ||| |||||||||||||| ||||||| ||||||||  |||||| |||||||    
T  16766809 ttgcttattttaggattctgctatggatttgattcgttgaaggtgaataaaatcgtaaaatcctaaattttaagatttaa 16766730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 31023434 - 31023357
Alignment:
Q  6 ccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtat 85  Q
    |||| ||||||||||||| |||||||||| |||  | |||||||||||||||| || ||||||||| | |||||||||||    
T  31023434 ccaccaaatacttatacaaaaatgactaaaaaa--ttgacaaaattcttcaaacccttttaaaatcctacgattttgtat 31023357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 31023325 - 31023259
Alignment:
Q  117 attttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcct 183  Q
    ||||||| |||||||  ||||||||||| || |||||||||||| ||||| ||| ||||||||||||    
T  31023325 attttgcctattttaggattctactatgaatttgagtcgttgaaagtgaataaagtcgcaaaatcct 31023259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 15266159 - 15266079
Alignment:
Q  142 atggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||| ||| || |||||| |||| ||| |  |||||||||| |||||||||||||||||| |||||| || ||||||||    
T  15266159 atggatttgaatcattgaagatgaataaagttacaaaatcctgaattttaggatttaaatcatgattttgacaacaatgat 15266079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 13503067 - 13503142
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggatttt 190  Q
    ||||||||| ||||||| |||| |  ||||||| |||| ||||||| ||||| || ||||||||||||| ||||||    
T  13503067 ggattttgcctattttagaattttgttatggatttgagccgttgaaagtgaataagatcgcaaaatcctagatttt 13503142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 5395674 - 5395756
Alignment:
Q  116 gattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggattta 198  Q
    |||||||| |||||| | ||||| |||||||| |||||| || ||| |||| ||| ||||||||||||  |||||| ||||||    
T  5395674 gattttgcctattttgagattctgctatggatttgagtcatttaagatgaataaagtcgcaaaatcctatattttatgattta 5395756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 13502962 - 13503036
Alignment:
Q  6 ccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttg 82  Q
    ||||||||||||||||||||||||||  | ||| ||| || |||| || ||||||| ||||||||| || |||||||    
T  13502962 ccacaaaatacttatacataaatgac--aaaaaaatgaactaaatcctccaaaaccttttaaaatcctgtgattttg 13503036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 34841641 - 34841592
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcct 183  Q
    ||||| |||||||| |||||||||||||||||| ||| ||||| ||||||    
T  34841641 attctcctatggatttgagtcgttgaaggtgaataaagtcgcagaatcct 34841592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 1690724 - 1690768
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttatttt 130  Q
    |||||||||||||||||| |||||||||||| ||| || ||||||    
T  1690724 gaaatcgtaaaatcgcaatcaaaatcaatgggtttcgcctatttt 1690768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5395515 - 5395596
Alignment:
Q  1 aaaggccacaaaatactt-atacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgt 83  Q
    |||| |||| |||||||| |||||||||||||||| |||  ||||||||||  || || ||||||||||||| ||| |||||||    
T  5395515 aaagtccaccaaatactttatacataaatgactaaaaaa--tggacaaaatcatttaagaccctttaaaatcctgcaattttgt 5395596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 27406849 - 27406786
Alignment:
Q  149 tgagtcgttgaaggtgaagaaaatcgcaaaatcct--ggattttaggatttaaatcaggatttt 210  Q
    ||||||||||||||| || ||||||||||||||||   |||||||| |||||| || |||||||    
T  27406849 tgagtcgttgaaggtaaaaaaaatcgcaaaatcctagagattttagaatttaattcgggatttt 27406786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 7e-57; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 8011129 - 8011323
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 100  Q
    |||| ||||||||||||||||||||||||| ||| | | || ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  8011129 aaagtccacaaaatacttatacataaatgaataa-agaaat-gacaaaattcttcaaaaccctttaaaatcctgcgattttgtttgaaatcgcaaaatcg 8011226  T
Q  101 caaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggattt 197  Q
    ||| ||||||| ||| |||||||| |||||   |||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  8011227 caatcaaaatcgatgaattttgctcattttgggattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttaggattt 8011323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 5361959 - 5362093
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| |||| |||||| ||||||  ||||||||||||||| ||||||||||||| |||||||| |||||||||||||     
T  5361959 gaaatcgtaaaatctcaatcaaaatcgatgggttttgcctattttggaattctactatggatttgagtcgttgaagatgaagaaagtcgcaaaatcctga 5362058  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || ||||||| || ||||||    
T  5362059 attttaggatttaagtcgggattttgacaacaatg 5362093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 36120957 - 36120823
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||| |||| || ||||||| | |||||||||||||||||||||||||||||||||      
T  36120957 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcttattttagaattttattatggatttaagtcgttgaaggtgaagaaaatcgcaaaatcctaa 36120858  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||  ||||||||| | ||||| || ||||||    
T  36120857 attttaaaatttaaatcggaattttgacaacaatg 36120823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 8889361 - 8889237
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||||||   |||||| |||| || ||||||||||| |||||||||| || |||||||||||    
T  8889361 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcctattttgggattctattatgaatttgagtcgttgatggtgaagaaattcacaaaatcctgg 8889262  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||||||||||| || |||||||    
T  8889261 attttaggatttaagtcgggatttt 8889237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 9770245 - 9770112
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||  || |||||||  |||||||  |||||||||||||| |||||||||||||||||| ||| || ||||||||| |    
T  9770245 gaaatcgtaaaatcgcaatcaaaattgatagattttgtctattttaggattctactatggatttgagtcgttgaaggtgaaaaaagtcacaaaatcctag 9770146  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    ||||||| |||||| ||  ||||||||| |||||    
T  9770145 attttagaatttaagtcgagattttaacaacaat 9770112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 17466212 - 17466099
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||  |||||| ||||||| |||||| || ||| |||||||||||||||||||||      
T  17466212 gaaatcgtaaaatcgcaatctaaatcgatggattttgcttattttaggattctattatggatttgagtccttaaagatgaagaaaatcgcaaaatcctaa 17466113  T
Q  186 attttaggatttaa 199  Q
    |||||| |||||||    
T  17466112 attttaagatttaa 17466099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 13551618 - 13551753
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||| |||||||||||  |||||| ||||||||||  |||||| |||||||| ||||||| |||||||||||||||||| ||| ||||||||||||      
T  13551618 gaaatcataaaatcgcaattaaaatcgatggattttgtctattttgaaattctaatatggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctaa 13551717  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    |||||||||| ||| ||  |||||| || |||||||    
T  13551718 attttaggatataagtcgagattttgacaacaatga 13551753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 9911407 - 9911531
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| |||||||||||  ||||||  |||||||||||||| |  | ||||||||||||||||| | |||||||| ||     
T  9911407 gaaatcgtaaaatcgcaatcaaaatcgatggattttgccaattttaggattctactatggatttaggccgttgaaggtgaagaaagttgcaaaatcttga 9911506  T
Q  186 attttagga-tttaaatcaggattt 209  Q
    ||||||||| |||||||| ||||||    
T  9911507 attttaggattttaaatcgggattt 9911531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 23064959 - 23065094
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||| ||||  |||||| ||||||||  | ||||||| |||||||| |||||| |||||||||||| ||||||||| |  |||||| ||||    
T  23064959 gaaatcgtaaaattgcaattaaaatcgatggatttgacctattttagaattctacaatggatttgagtcgttgaatgtgaagaaagttacaaaatactgg 23065058  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    ||||||| |||||| || || ||||||| |||||||    
T  23065059 attttagaatttaagtcggggttttaacaacaatga 23065094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 4156983 - 4156906
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||||||||||||||||||||||| ||| |||  |||||||||| |||||||| ||||||||||||||||||||||||||    
T  4156983 cacaaaatacttatacataaatgaataaaaaa--tggacaaaatccttcaaaatcctttaaaatcttgcgattttgtatg 4156906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 5375797 - 5375685
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| |||| || ||| ||||||  ||||||||||||||| |||| || | |||||||||||||||||||| |||||||||| |      
T  5375797 gaaatcgtaaaatcgcaatcaaagtcgatgaattttgtctattttaaaattctattatgaattttagtcgttgaaggtgaagaaagtcgcaaaatcttaa 5375698  T
Q  186 attttaggattta 198  Q
    ||||||| |||||    
T  5375697 attttagaattta 5375685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 7044831 - 7044736
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    ||||||||||||||||   ||||| |||||||| |||||||||||||||||| ||| | |||||||| ||||||||||||||||| || |||||||    
T  7044831 ggattttgcttattttgggattctgctatggatttgagtcgttgaaggtgaataaagttgcaaaatcatggattttaggatttaagtcgggatttt 7044736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 18459609 - 18459695
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| ||||||||| ||| ||||||||||||    
T  18459609 aaagtccacaaaatacttatacataaatgatta-caaaaatggacaaaatccttcaaaaccgtttaaaatcctgcaattttgtatgaa 18459695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 6346992 - 6347062
Alignment:
Q  17 ttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  6346992 ttatacataaatgactaaaaaa-atggacaaaatccttcaaaaccctttaaaatcctgcgattttgtgtgaa 6347062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 10143032 - 10142897
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||||||||||  ||||||  |||| |||||||||  |||||| ||||||||| ||||| |||||||||  |      
T  10143032 gaaatcgtaaaatcacaatcaaaatcgatggattttgtctattttggaattatactatggacttgagtcattgaaggtggagaaagtcgcaaaatattaa 10142933  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    ||||||| |||||| || ||||||| || |||||||    
T  10142932 attttagaatttaagtcgggattttcacaacaatga 10142897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 24719725 - 24719650
Alignment:
Q  11 aaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||| ||| ||| |||||||| ||||||||||||||    
T  24719725 aaatacttatacataaatgactaaaaaaaatggacacaattcttaaaagcccattaaaatcctgcgattttgtatg 24719650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 18459733 - 18459838
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaact 214  Q
    ||||||||| |||||||  ||||| |||||||| |||||||||||| ||||| | | |||||||||| ||||||||||||||| | || ||||||| ||     
T  18459733 ggattttgcctattttaggattctgctatggatttgagtcgttgaaagtgaatacagtcgcaaaatcttggattttaggattttagtcgggatttttaca 18459832  T
Q  215 acaatg 220  Q
    ||||||    
T  18459833 acaatg 18459838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 13023702 - 13023566
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaa--attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctg 184  Q
    ||||||||||||||||| ||||||| || ||||||   ||||||     |||||||||||||| |||||| ||||||||||||||| ||||||||||||     
T  13023702 aaatcgtaaaatcgcaatcaaaatcgattgattttatctattttttgggattctactatggatttgagtcattgaaggtgaagaaagtcgcaaaatccta 13023603  T
Q  185 ga-ttttaggatttaaatcaggattttaactacaatg 220  Q
     | ||||||||||||| |  ||||||| || ||||||    
T  13023602 aatttttaggatttaagttgggattttgacaacaatg 13023566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 6347114 - 6347173
Alignment:
Q  140 ctatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||||||| ||||||||||||||| || ||| | ||||||||||||||||||||||||||    
T  6347114 ctatggatttgagtcgttgaaggtaaataaagttgcaaaatcctggattttaggatttaa 6347173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 7452499 - 7452418
Alignment:
Q  139 actatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatga 221  Q
    ||||||||| |||||||||||||||||| ||| | ||||||| ||||||||||| |||||| || ||||||| || |||||||    
T  7452499 actatggat-tgagtcgttgaaggtgaataaagttgcaaaattctggattttagaatttaagtcgggattttcacaacaatga 7452418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7803232 - 7803140
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaa---ttc----ttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||| |||||||||||||||||||||||||||||   | ||||||||||   |||    ||||||||||||||||||||||| ||||||||||    
T  7803232 aaagtccacaaaatacttatacataaatgactaaattaaatggacaaaatcgttcaaaattcaaaaccctttaaaatcttgcaattttgtatg 7803140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7825186 - 7825094
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaa---ttc----ttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||| |||||||||||||||||||||||||||||   | ||||||||||   |||    ||||||||||||||||||||||| ||||||||||    
T  7825186 aaagtccacaaaatacttatacataaatgactaaattaaatggacaaaatcgttcaaaattcaaaaccctttaaaatcttgcaattttgtatg 7825094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 24719602 - 24719514
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatgat 222  Q
    ||||| |||||||| |||||||||||||||||| ||| |||||||||| || ||||||| | |||| ||  |||||| || ||||||||    
T  24719602 attctgctatggatttgagtcgttgaaggtgaataaagtcgcaaaatcttgaattttagaaattaagtcgagattttgacaacaatgat 24719514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 4156866 - 4156763
Alignment:
Q  116 gattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaacta 215  Q
    ||||||||||||||||  |||||||||  ||| ||||||||| |||||||| ||| ||  ||||||||  |||||| ||||||| || ||||||| || |    
T  4156866 gattttgcttattttaggattctactacagatttgagtcgttaaaggtgaataaagtcataaaatcctaaattttaagatttaagtcgggattttgacaa 4156767  T
Q  216 caat 219  Q
    ||||    
T  4156766 caat 4156763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 7815661 - 7815563
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaac 213  Q
    ||||||||| ||||||   |||||||||||| | ||||||| | ||| |||| ||| || |||||| ||| |||||||||||||| || ||||||||||    
T  7815661 ggattttgcctattttgggattctactatgggtttgagtcgcttaagctgaataaagtcacaaaatgctgtattttaggatttaagtcgggattttaac 7815563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 7452641 - 7452563
Alignment:
Q  6 ccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||||||| ||||||||| ||||||| || |||  |||||||  | |||||||||||||||||||| ||| ||||||||||    
T  7452641 ccacaaaacacttatacaaaaatgaccaaaaaaattggacaa--tccttcaaaaccctttaaaatcctgcaattttgtatg 7452563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7815783 - 7815691
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaat---tc----ttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||| ||||| |||||||||||||||||||||||   | |||||||||||   ||    ||||||||||||||||||||||| ||||||||||    
T  7815783 aaagtccacataatacttatacataaatgactaaattaaatggacaaaatcgttcaaaattcaaaaccctttaaaatcttgcaattttgtatg 7815691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 10394733 - 10394658
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttg 82  Q
    |||||||| ||||||||||||||| ||| |||   |||  |||| ||||||||| |||||||||| ||||||||||    
T  10394733 cacaaaattcttatacataaatgattaataaaagaggaagaaatccttcaaaactctttaaaatcctgcgattttg 10394658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 10394614 - 10394565
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtg 164  Q
    |||| |||| |||||||||||||||||||| || | ||||||||||||||    
T  10394614 ggatcttgcctattttaaaattctactatgaatttaagtcgttgaaggtg 10394565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 24649606 - 24649818
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcgcaaaca 106  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||  ||    
T  24649606 cacaaaatacttatacataaatgactaaaaaa-atggataaaattcttcaaaaccctttaaaatcctgcgatattgtatgaaatcgtaaaatcacagtca 24649704  T
Q  107 aaatcaatggattttgc-ttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcagg 205  Q
    ||||  ||| ||||||| |||||||  ||||||||||||||| ||||||||||||||||||| || ||  |||||||| ||||||| ||||||| || ||    
T  24649705 aaattgatgaattttgctttattttggaattctactatggatttgagtcgttgaaggtgaagcaagtcaaaaaatcctagattttacgatttaagtcggg 24649804  T
Q  206 attttaactacaat 219  Q
    ||||| || |||||    
T  24649805 attttgacaacaat 24649818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 28745903 - 28745768
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||||  |||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||      
T  28745903 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgtctattttgagattctactatgaatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaa 28745804  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    ||||||||||||||||| ||||||| || |||||||    
T  28745803 attttaggatttaaatcgggattttgacaacaatga 28745768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 20756172 - 20756039
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||| |||| ||||||| || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||     
T  20756172 gaaatcgtaaaattgcaatcaaaatcgattgattttgcctattttaagattctactatggatttgagtcattgaaggtgaagaaaatcgcaaaatcctga 20756073  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    ||||||  |||||| || ||||||| || |||||    
T  20756072 attttataatttaagtcgggattttgacaacaat 20756039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 29067417 - 29067283
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||||||||||  ||||||   |||||||||||||| |||||||||||||||||||||| |||||||||||||     
T  29067417 gaaatcgtaaaatcacaatcaaaatcgatggattttgtctattttgggattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctga 29067318  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||| |||||| || ||||||| || ||||||    
T  29067317 attttagaatttaagtcgggattttgacaacaatg 29067283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10872857 - 10873065
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 100  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||| |||||||||||| |||||||||||  ||  ||| ||      
T  10872857 aaagtccacaaaatacttaaacataaatgactaaaaaaaatggacaaaatccttcaaaaccttttaaaatcttgtgattttgtatg-gattttaagattt 10872955  T
Q  101 caaacaaaatcaat-ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
        | |  | | | ||||||||| |||||| | ||||| |||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||| |    
T  10872956 tgtgcgattttactaggattttgcctattttgagattctgctatggatttgagtcgttgaaggtgaataatatcacaaaatcctggattttaggatttca 10873055  T
Q  200 atcaggattt 209  Q
    ||| ||||||    
T  10873056 atcgggattt 10873065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 3449288 - 3449411
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||||||||  |||||| ||||||||||| |||||||  |||||||||| ||| | || |||||||||| |||||| |||||||||||||     
T  3449288 gaaatcgtaaaatcgcaataaaaatctatggattttgcctattttaggattctactatagattttag-cgttgaaggtaaagaaagtcgcaaaatcctga 3449386  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||||||||||| || |||||||    
T  3449387 attttaggatttaagtcgggatttt 3449411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 17064454 - 17064330
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||||||||  |||||| ||| ||||||  ||||||| |||||||||||| ||  ||||||||||||||||| | |||||||||||||||     
T  17064454 gaaatcgtaaaatcgcaataaaaatcgatgaattttgtctattttagaattctactatgaattggagtcgttgaaggtgaacacaatcgcaaaatcctga 17064355  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||| ||||||| || |||||||    
T  17064354 attttaagatttaagtcgggatttt 17064330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 21963554 - 21963436
Alignment:
Q  94 aaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagg 193  Q
    |||||||| | ||||||| ||||||||||| |||||||  ||| |||||||||| ||||||||| |||||||||||| ||| |||||| || ||||||||    
T  21963554 aaaatcgctatcaaaatcgatggattttgcatattttaggattttactatggatttgagtcgttcaaggtgaagaaagtcgtaaaatcttgaattttagg 21963455  T
Q  194 atttaaatcaggattttaa 212  Q
    |||||| || |||||||||    
T  21963454 atttaagtcgggattttaa 21963436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 21985990 - 21985872
Alignment:
Q  94 aaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagg 193  Q
    |||||||| | ||||||| ||||||||||| |||||||  ||| |||||||||| ||||||||| |||||||||||| ||| |||||| || ||||||||    
T  21985990 aaaatcgctatcaaaatcgatggattttgcatattttaggattttactatggatttgagtcgttcaaggtgaagaaagtcgtaaaatcttgaattttagg 21985891  T
Q  194 atttaaatcaggattttaa 212  Q
    |||||| || |||||||||    
T  21985890 atttaagtcgggattttaa 21985872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 39428035 - 39427911
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||| ||||  ||||||   |||||||||| ||| |||||||||||| ||||||||| | ||||||||| ||    
T  39428035 gaaatcgtaaaatcgcaatcaaaatcgatggactttgtctattttgggattctactatcgatttgagtcgttgaacgtgaagaaagttgcaaaatccagg 39427936  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||||||  ||||||||| |||||||    
T  39427935 attttaaaatttaaatcgggatttt 39427911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 22494780 - 22494890
Alignment:
Q  89 atcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggatt 188  Q
    ||||||||||||||| ||||||| ||| |||||| ||||||||  ||||||||||| || | |||||||||||||||| ||| ||||||||||   ||||    
T  22494780 atcgtaaaatcgcaatcaaaatcgatgaattttgtttattttaggattctactatgaattttagtcgttgaaggtgaaaaaagtcgcaaaatctcagatt 22494879  T
Q  189 ttaggatttaa 199  Q
    |||||||||||    
T  22494880 ttaggatttaa 22494890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 30727694 - 30727811
Alignment:
Q  93 taaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttag 192  Q
    ||||||||||| ||||||| ||| ||||||  ||||||   |||||||||| ||| |||||||||||||||||||||| ||| ||||| | ||||||||     
T  30727694 taaaatcgcaatcaaaatcgatgaattttgtctattttgggattctactatagatttgagtcgttgaaggtgaagaaagtcgtaaaattcaggattttaa 30727793  T
Q  193 gatttaaatcaggatttt 210  Q
    ||||||| ||||||||||    
T  30727794 gatttaagtcaggatttt 30727811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 8156126 - 8156261
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttg-cttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctg 184  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||   ||| |||||||||| |||||| ||||||||||| ||||||| ||||| |||    
T  8156126 gaaatcgtaaaatcgcaatcaaaatcgatggattttgtctaattttgggattatactatggatttgagtcattgaaggtgaaaaaaatcgtaaaattctg 8156225  T
Q  185 gattttaggatttaaatcaggattttaactacaatg 220  Q
     ||||||| |||||| |  ||||||| || ||||||    
T  8156226 aattttagaatttaagttgggattttgacaacaatg 8156261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 22137403 - 22137285
Alignment:
Q  94 aaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagg 193  Q
    ||||||||||  |||||| ||||||||||| ||||||   ||| |||||||||| |||| |||| |||||||||||| ||| || ||| || ||||||||    
T  22137403 aaaatcgcaattaaaatcgatggattttgcatattttgggattttactatggatttgaggcgttcaaggtgaagaaagtcgtaacatcttgaattttagg 22137304  T
Q  194 atttaaatcaggattttaa 212  Q
    |||||| ||||||||||||    
T  22137303 atttaagtcaggattttaa 22137285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 24620196 - 24620334
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaa---atcgcaaaatcc 182  Q
    ||||||||||||| ||||  |||||| ||| ||||||| |||||| | |||||||| || || ||||||||||||||||||||||    ||||||||||     
T  24620196 gaaatcgtaaaattgcaattaaaatcgatgaattttgcctattttgagattctactgtgaatttgagtcgttgaaggtgaagaaagtcgtcgcaaaatct 24620295  T
Q  183 tggattttaggatttaaatcaggattttaactacaatga 221  Q
    |  |||||||||||||| || | ||||| || |||||||    
T  24620296 taaattttaggatttaagtcggaattttgacaacaatga 24620334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 22356048 - 22356162
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtg-aagaaaatcgcaaaatcctg 184  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||  ||||||||||| ||   | | ||||||| || || ||||||  |||||||||    
T  22356048 gaaatcgtaaaatcgcaatcaaaattcatggattttgcttattttaggattctactatgaattcaaattgttgaagctgaaaaaaaatcttaaaatcctg 22356147  T
Q  185 gattttaggatttaa 199  Q
     ||||||||||||||    
T  22356148 aattttaggatttaa 22356162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 25870363 - 25870510
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatca-----atggattttgcttattttaaaattctactatggatctgag----tcgttgaaggtgaagaaaatcgca 176  Q
    |||||||||||||||||| ||||||||     ||||||||||| |||||| |  |||||||| | || ||||    ||||||||| |||||||| || ||    
T  25870363 gaaatcgtaaaatcgcaatcaaaatcaaatcgatggattttgcctattttgaggttctactacgaatttgagtcgttcgttgaagatgaagaaagtcaca 25870462  T
Q  177 aaatcctggattttaggatttaaatcaggattttaactacaatgatgt 224  Q
    ||||| ||||||||||||||||| ||  |||||| || ||||||||||    
T  25870463 aaatcttggattttaggatttaagtcgagattttgacaacaatgatgt 25870510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 27676441 - 27676355
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    ||||| |||||||| |||||| | ||||||||| ||| ||||||||||||| |||||| ||||||| |||||||||| || ||||||    
T  27676441 attctgctatggatttgagtcatagaaggtgaataaagtcgcaaaatcctgcattttacgatttaagtcaggattttgacaacaatg 27676355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 17796699 - 17796620
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    ||||||| ||||||| |||||||||||| ||| || ||||||||  || |||||||||||||||| ||| ||||||||||    
T  17796699 cacaaaacacttataaataaatgactaaaaaaaatagacaaaatcattaaaaaccctttaaaatcctgcaattttgtatg 17796620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 19105139 - 19105060
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    ||||||| ||||||| |||||||||||| ||| || ||||||||  || |||||||||||||||| ||| ||||||||||    
T  19105139 cacaaaacacttataaataaatgactaaaaaaaatagacaaaatcattaaaaaccctttaaaatcctgcaattttgtatg 19105060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 15806550 - 15806635
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    ||||| |||||||| |||||| ||||||||||| ||| ||||||||| ||||||| |||||||||| || ||||||| || ||||||    
T  15806550 attctgctatggatttgagtcattgaaggtgaataaagtcgcaaaattctggattgtaggatttaagtc-ggattttgacaacaatg 15806635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 42696980 - 42696920
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatgga 146  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||||| | |||||||||||||    
T  42696980 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcctattttgagattctactatgga 42696920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 28135824 - 28135739
Alignment:
Q  117 attttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatc 202  Q
    ||||||| ||||| | |||| | |||||||| ||||||  |||| ||||| ||| ||||||||||||| |||||| ||||||||||    
T  28135824 attttgcctatttgagaattttgctatggatttgagtcactgaaagtgaataaagtcgcaaaatcctgaattttacgatttaaatc 28135739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 27676568 - 27676511
Alignment:
Q  6 ccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaacccttt 65  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||| ||| ||| ||||||    
T  27676568 ccacaaaatacttatacataaatgacta--aaaaatggacaaaatccttaaaaccccttt 27676511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 17250190 - 17250057
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||   |||||| ||||||| | |||||||||||||||||||| | ||||||||||||    
T  17250190 gaaatcgtaaaatcgcaatcaaaatcaatgaattttgcctattttgggattctagtatggatttaagtcgttgaaggtgaagaaagttgcaaaatcctgg 17250091  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    |||||||||||||| || |||||||||| |||||    
T  17250090 attttaggatttaagtcgggattttaacaacaat 17250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 17543736 - 17543872
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||| || ||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||| |||||||||||||     
T  17543736 gaaatagtaaaatcgcaatcaaaatccatagattttgcttattttaagattctactatggatttgagtcgttgaaagtgaaaaaagtcgcaaaatcctga 17543835  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| ||  |||||| || ||||||||    
T  17543836 attttaggatttaagtcgagattttgacaacaatgat 17543872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 23897944 - 23897810
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| |||||||| || ||||||| |||| |||||||||| |||||||||||| ||||||||| |||||||||||||     
T  23897944 gaaatcgtaaaatcgcaatcaaaatcgatggatttcgcctattttagaattttactatggatttgagtcgttgaacgtgaagaaagtcgcaaaatcctgc 23897845  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || |||| ||| | ||||||    
T  23897844 attttaggatttaagtcgggatcttatcaacaatg 23897810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 30912408 - 30912542
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||   |||||| ||||||| |||||||||||||||||||||| ||||||||||||      
T  30912408 gaaatcgtaaaatcgcaatcaaaatctatggattttgcctattttgtgattctattatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaa 30912507  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| |  ||||||| || ||||||    
T  30912508 attttaggatttaagttgggattttgacaacaatg 30912542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 15528106 - 15528239
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| | ||||| ||||||||||  |||||||| ||||||||||| || | ||||||| |||||||||||| |||||||||||||     
T  15528106 gaaatcgtaaaatcgcaatcgaaatcgatggattttgtctattttaagattctactatgaatttaagtcgttaaaggtgaagaaagtcgcaaaatcctga 15528205  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    |||||||||||||| || ||||||| || |||||    
T  15528206 attttaggatttaagtcgggattttgacaacaat 15528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 6943464 - 6943591
Alignment:
Q  94 aaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagg 193  Q
    |||||||||| ||||||| ||| ||||||  |||||| | |||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  6943464 aaaatcgcaatcaaaatcgatgaattttgtctattttgagattctactatcgatttgagtcgttgaaggtgaagaaagtcgcaaaatcctgaattttagg 6943563  T
Q  194 atttaaatcaggattttaactacaatga 221  Q
    |||||| || ||||||| || |||||||    
T  6943564 atttaagtcgggattttgacaacaatga 6943591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 27233273 - 27233386
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||| ||||||||||| ||||||| ||||||||||  ||||||   |||||||||||||| | |||||||||||||||||||| || |||||||||||    
T  27233273 gaaatcataaaatcgcaatcaaaatcgatggattttgtctattttgggattctactatggatttaagtcgttgaaggtgaagaaagtcacaaaatcctgg 27233372  T
Q  186 attttaggatttaa 199  Q
    ||||||||||||||    
T  27233373 attttaggatttaa 27233386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 19748466 - 19748342
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||| ||||||| |||||||| ||||||||| |||| |||||| || ||||||||||||||| |||||||||||    
T  19748466 gaaatcgtaaaatcacaatcaaaatcgatgaattttgcctattttaagattctactacggatttgagtcattaaaggtgaagaaaatctcaaaatcctgg 19748367  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||| || ||||||| || |||||||    
T  19748366 attgtaagatttaagtcgggatttt 19748342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 26053292 - 26053425
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||  ||| ||||||  ||||||||||||||||||   |||||| |||| || |||||| ||||||||||||||| |||||||||||| |    
T  26053292 gaaatcgtaaaatgacaatcaaaattgatggattttgcttattttgggattctattatgaatttgagtcattgaaggtgaagaaagtcgcaaaatcctag 26053391  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    |||||| ||||||| || ||||||| || |||||    
T  26053392 attttaagatttaagtcgggattttgacaacaat 26053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 26073345 - 26073478
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||  ||| ||||||  ||||||||||||||||||   |||||| |||| || |||||| ||||||||||||||| |||||||||||| |    
T  26073345 gaaatcgtaaaatgacaatcaaaattgatggattttgcttattttgggattctattatgaatttgagtcattgaaggtgaagaaagtcgcaaaatcctag 26073444  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    |||||| ||||||| || ||||||| || |||||    
T  26073445 attttaagatttaagtcgggattttgacaacaat 26073478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3573883 - 3573982
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaaatcgtaaaatcg 100  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||| ||| ||| ||||||| ||||||| ||||||||    
T  3573883 aaagtccacaaaatacttaaacataaatgactaaaaaa-atggaaaaaattcttcaaaaccctttaacatcatgcaattttgtttgaaatcttaaaatcg 3573981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 7223645 - 7223518
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||| | ||       ||||||||||| ||||||||||||      
T  7223645 gaaatcgtaaaatcgcaatcaaaatcgatggattttgcttattttggaattctactatggatttaag-------aggtgaagaaagtcgcaaaatcctaa 7223553  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || ||||||| || ||||||    
T  7223552 attttaggatttaagtcgggattttgacaacaatg 7223518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 7918378 - 7918510
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgga 186  Q
    |||||| |||||| ||| ||||||| || |||||||||||| |||  ||| |||||||||| | |||||||||||||||| ||| ||||||||||||| |    
T  7918378 aaatcgcaaaatcccaatcaaaatcgattgattttgcttatgttaggattttactatggatttaagtcgttgaaggtgaaaaaagtcgcaaaatcctgaa 7918477  T
Q  187 ttttaggatttaaatcaggattttaactacaat 219  Q
    |||||| |||||| || ||||||| || |||||    
T  7918478 ttttagaatttaagtcgggattttgacaacaat 7918510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 2912245 - 2912367
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgga 186  Q
    |||||||||||| |||| ||||||| ||| |||||||||||||||| |||||||||| ||| ||| ||||||||| || ||||| | ||||||||||  |    
T  2912245 aaatcgtaaaattgcaatcaaaatcgatgaattttgcttattttaagattctactat-gatttgaatcgttgaagatggagaaagttgcaaaatcctaaa 2912343  T
Q  187 ttttaggatttaaatcaggatttt 210  Q
    ||||| ||||||| || |||||||    
T  2912344 ttttaagatttaagtcgggatttt 2912367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 22498881 - 22498992
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||| ||||  |||||| ||||||||||  |||||| | ||| |||||||||| ||||||||| |||||||||||| |||||||||  |||    
T  22498881 gaaatcgtaaaattgcaattaaaatcgatggattttgtctattttgagattgtactatggatttgagtcgttcaaggtgaagaaagtcgcaaaattgtgg 22498980  T
Q  186 attttaggattt 197  Q
    | ||||||||||    
T  22498981 aatttaggattt 22498992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 11327567 - 11327701
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||| |||||||||||||  |||||| ||| ||||||| ||||||   |||||||||||||| | |||| |||||| ||||||||| ||||||| | |||    
T  11327567 gaaaacgtaaaatcgcaattaaaatcgatgaattttgcctattttgggattctactatggatttaagtccttgaagatgaagaaaaccgcaaaaccttgg 11327666  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||| ||||| || ||||||| || ||||||    
T  11327667 attttaggttttaagtcgggattttgacaacaatg 11327701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 17103328 - 17103199
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||||| || ||||||| ||||||||||  ||||||   ||||||||||| || |||||||||||| |||       |||||||||||||     
T  17103328 gaaatcgtaaaatcgtaatcaaaatcgatggattttgtctattttgggattctactatgcatttgagtcgttgaaagtg-------tcgcaaaatcctga 17103236  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||| ||||||| || ||||||| || ||||||||    
T  17103235 attttaagatttaagtcgggattttgacaacaatgat 17103199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 10509023 - 10509143
Alignment:
Q  90 tcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattt 189  Q
    ||||||||||| || ||||||| ||| ||||||| ||||||   ||||||||||  || |||||| ||||| ||||||||| || |||| | ||| ||||    
T  10509023 tcgtaaaatcgtaatcaaaatcgatgaattttgcctattttgggattctactataaatttgagtcattgaatgtgaagaaagtcacaaatttctgaattt 10509122  T
Q  190 taggatttaaatcaggatttt 210  Q
    |||||||||| || |||||||    
T  10509123 taggatttaagtctggatttt 10509143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 18491081 - 18491157
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    ||||| |||||||| |||||||||||||||||| |||   ||||||| |||||||||||||||||| || |||||||    
T  18491081 attctgctatggatttgagtcgttgaaggtgaataaagatgcaaaattctggattttaggatttaagtcgggatttt 18491157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 4841836 - 4841906
Alignment:
Q  17 ttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||||||||||||||||| ||| ||| ||||||| || ||||||||||||||||| |||||| |||||||||    
T  4841836 ttatacataaatgactaaaaaa-atgcacaaaatcctccaaaaccctttaaaatcatgcgatcttgtatgaa 4841906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 3573984 - 3574041
Alignment:
Q  142 atggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||||| |||||||||||||||||||||| |||| |||| ||||||||||| ||||||    
T  3573984 atggatttgagtcgttgaaggtgaagaaagtcgcgaaattctggattttagaatttaa 3574041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 5422798 - 5422878
Alignment:
Q  140 ctatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    |||| ||| |||||||||||||||||| ||| | |||||||| || ||||||| |||||| || ||||||| || ||||||    
T  5422798 ctatagatttgagtcgttgaaggtgaataaagttgcaaaatcatgaattttagtatttaagtcgggattttgacaacaatg 5422878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 21354873 - 21354789
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaa 170  Q
    ||||||||||||||||||  |||| | ||||||||||  ||||||   ||||||| |||||| | ||||||||||||| ||||||    
T  21354873 gaaatcgtaaaatcgcaataaaaaacgatggattttgtctattttgggattctaccatggatttaagtcgttgaaggtaaagaaa 21354789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 4841963 - 4842027
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaa 200  Q
    ||||| ||| |||| |||||||||||||||||| ||| |||||||||||   |||||||||||||||    
T  4841963 attctgctacggatttgagtcgttgaaggtgaataaagtcgcaaaatcc--aattttaggatttaaa 4842027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 12245171 - 12245108
Alignment:
Q  157 tgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    |||| ||||| ||| ||||||||| ||| |||||| ||||||||||| ||||||||| ||||||    
T  12245171 tgaaagtgaataaagtcgcaaaatactgaattttaagatttaaatcatgattttaacaacaatg 12245108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 18490792 - 18490854
Alignment:
Q  7 cacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaat 70  Q
    |||||||||||| ||||||||||||||| ||| ||||| ||||| ||||||||  |||||||||    
T  18490792 cacaaaatacttgtacataaatgactaa-aaaaatggataaaatccttcaaaattctttaaaat 18490854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 18491005 - 18491063
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttag 192  Q
    ||||| |||||||| |||||| ||||||||||| ||| | ||||||| |||||||||||    
T  18491005 attctgctatggatttgagtcattgaaggtgaataaagttgcaaaatgctggattttag 18491063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 31407425 - 31407397
Alignment:
Q  6 ccacaaaatacttatacataaatgactaa 34  Q
    |||||||||||||||||||||||||||||    
T  31407425 ccacaaaatacttatacataaatgactaa 31407397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 19579075 - 19578962
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||   |||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19579075 gaaatcgtaaagtcgcaatcaaaatcgatggattttgcttattttgggattctactatggatttaagtcgttgaaggtgaagaaaatcgcaaaatcctgg 19578976  T
Q  186 attttaggatttaa 199  Q
    |||||| |||||||    
T  19578975 attttatgatttaa 19578962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 18051526 - 18051662
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||| |||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||||| ||||||||||||      
T  18051526 gaaatcgtacaatcgcaatcaaaatcgatggattttgcctattttagaattctactatagatttgagtcgttgaagttgaagaaagtcgcaaaatcctat 18051625  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| || ||||||| || ||||||||    
T  18051626 attttaggatttaagtcgggattttgacaacaatgat 18051662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 43235001 - 43234888
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||||||||| | |||||||  |||||||||||||| | |||||||||||||||||||| |||||||||||||     
T  43235001 gaaatcgtaaaatcacaatcaaaatcgatggatttttcctattttaggattctactatggatttaagtcgttgaaggtgaagaaagtcgcaaaatcctga 43234902  T
Q  186 attttaggatttaa 199  Q
    ||||||||||||||    
T  43234901 attttaggatttaa 43234888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 21059152 - 21059285
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||||    ||||||| |||||| |||||||||||| ||||||||| |||||||||||| |    
T  21059152 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcctatttagggattctac-atggatttgagtcgttgaaagtgaagaaagtcgcaaaatcctag 21059250  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||||||||||||| ||||||| || ||||||    
T  21059251 attttaggatttaaatcgggattttgacaacaatg 21059285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 20923843 - 20923718
Alignment:
Q  94 aaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagg 193  Q
    |||||||||| ||||||| ||||| ||||| |||||||  |||||||||||||| |  ||||||||||||||||||| ||||||||| ||||||||||||    
T  20923843 aaaatcgcaatcaaaatcgatggactttgcctattttaggattctactatggatttaggtcgttgaaggtgaagaaagtcgcaaaattctggattttagg 20923744  T
Q  194 atttaaatcaggattttaactacaat 219  Q
    |||||| || ||||||| || |||||    
T  20923743 atttaagtcgggattttgacaacaat 20923718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 41688661 - 41688773
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||| |||| ||||||  || | |||||||||||||||||||||| ||||||||| |     
T  41688661 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcttattttagaattttactataaatttaagtcgttgaaggtgaagaaaattgcaaaatcc-ga 41688759  T
Q  186 attttaggatttaa 199  Q
    ||||||||||||||    
T  41688760 attttaggatttaa 41688773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 22645715 - 22645849
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||  ||||| ||| ||||||||   ||| |||||||||| | | |||||||||||||||||| ||||||||| ||||    
T  22645715 gaaattgtaaaatcgcaatcaaaatagatggaatttacttattttgggattttactatggatttaaatcgttgaaggtgaagaaagtcgcaaaatactgg 22645814  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || ||||||| || ||||||    
T  22645815 attttaggatttaagtcgggattttgacaacaatg 22645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 18843848 - 18843716
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||| ||| |||| ||||||| ||| ||||||  ||||||   ||||||| |||||| |||||||||||||||||||||| |||||||||||||     
T  18843848 gaaatcgtataattgcaatcaaaatcgatgaattttgtctattttgggattctacaatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctga 18843749  T
Q  186 attttaggatttaaatcaggattttaactacaa 218  Q
    ||| |||||||||| || | |||||||| ||||    
T  18843748 attataggatttaagtcggaattttaacaacaa 18843716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 27340189 - 27340306
Alignment:
Q  93 taaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttag 192  Q
    ||||||| ||| ||||||| ||| ||||||| |||||||| |||||||||| ||| ||||||||||||| |||||||| |||||||||| |  ||||||     
T  27340189 taaaatctcaatcaaaatcgatgaattttgcctattttaagattctactatagatttgagtcgttgaagatgaagaaagtcgcaaaatcataaattttat 27340288  T
Q  193 gatttaaatcaggatttt 210  Q
    ||||||| || |||||||    
T  27340289 gatttaagtcgggatttt 27340306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 38158250 - 38158363
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||  ||| ||||||||||||||||||  ||||||   |||||||| ||||| ||||| |||||| || |||||| |||||||||||| |    
T  38158250 gaaatcgtaaaataacaaccaaaatcaatggattttgtctattttgggattctactctggatttgagttgttgaaagtcaagaaagtcgcaaaatcctag 38158349  T
Q  186 attttaggatttaa 199  Q
    ||||||||||||||    
T  38158350 attttaggatttaa 38158363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 43005862 - 43005940
Alignment:
Q  10 aaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||||||||| | |||||||||||| ||| ||| ||||||| ||||||||||||| |||||| ||||||||||||||||    
T  43005862 aaaatacttaaatataaatgactaaaaaaaatgaacaaaatccttcaaaacccttaaaaatcctgcgattttgtatgaa 43005940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 23172476 - 23172552
Alignment:
Q  134 attctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    |||||||||||||| | ||||||||||| |||||||| ||||||||||||  |||||||||||||| || |||||||    
T  23172476 attctactatggatttaagtcgttgaagatgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggatttt 23172552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 19979732 - 19979648
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaa 170  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||   ||||||| ||| || ||||||||||||| ||||||||    
T  19979732 gaaatcgtaaaatcgcaatcaaaatccatggattttgcgtgttttgggattctaccatgaatttgagtcgttgaagatgaagaaa 19979648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24648153 - 24648095
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaa 59  Q
    |||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||||||    
T  24648153 aaagtccacaaaatacttatacataaatgactaaaataaatggacaaaatccttcaaaa 24648095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 24106711 - 24106650
Alignment:
Q  149 tgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    ||||||||||  |||||||||| | ||||||||||| |||||| ||||||||||||||||||    
T  24106711 tgagtcgttgctggtgaagaaagttgcaaaatcctgaattttatgatttaaatcaggatttt 24106650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 26021453 - 26021408
Alignment:
Q  41 tggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  26021453 tggacaaaatccttcaaaaccctttaaaatcctgcgattttgtatg 26021408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 20321074 - 20320988
Alignment:
Q  88 aatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcg 174  Q
    |||||||||||||||| |||| |  ||| |||||   ||||||  |||| |||||||||| | |||| |||||||||||||||||||    
T  20321074 aatcgtaaaatcgcaatcaaagttgatgaattttatctattttggaattttactatggattttagtcattgaaggtgaagaaaatcg 20320988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 8576 - 8440
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||||||||||||||||||||||   ||||||| || ||| | |||||||||||||||||||| |||||||||| |||    
T  8576 gaaatcgtaaaatcgcaatcaaaatcaatggattttgcttattttgggattctacaatagatttaagtcgttgaaggtgaagaaagtcgcaaaatcgtgg 8477  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| |  ||||||| || ||||||||    
T  8476 attttaggatttaagtagggattttgacaacaatgat 8440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 14055380 - 14055250
Alignment:
Q  90 tcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattt 189  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||    
T  14055380 tcgtaaaatcgcaatcaaaatctatggattttgcctattttagaattctactatagatttgagtcgttgaaggtgaagaaagtcgcaaaatcttggattt 14055281  T
Q  190 taggatttaaatcaggattttaactacaatg 220  Q
    |||||| ||| |  ||||||| || ||||||    
T  14055280 taggatataagtggggattttcacaacaatg 14055250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 14365408 - 14365278
Alignment:
Q  90 tcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattt 189  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||    
T  14365408 tcgtaaaatcgcaatcaaaatctatggattttgcctattttagaattctactatagatttgagtcgttgaaggtgaagaaagtcgcaaaatcttggattt 14365309  T
Q  190 taggatttaaatcaggattttaactacaatg 220  Q
    |||||| ||| |  ||||||| || ||||||    
T  14365308 taggatataagtggggattttcacaacaatg 14365278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 27221551 - 27221417
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| |||||||||||  ||||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||||     
T  27221551 gaaatcgtaaaatcgcaatcaaaatcgatggattttgccaattttaagattctactatgtatttgagtcgttgaagatgaagaaagtcgcaaaatcctga 27221452  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||| |||||| |  |||||||||| ||||||    
T  27221451 attttagaatttaagttgggattttaacaacaatg 27221417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 5058662 - 5058538
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| |||||||   ||||||||| |||||||| |||||||||||||| |  ||||||||||||||||||||||||||||| |||     
T  5058662 gaaatcgtaaaatcgcaatcaaaatcgtaggattttgcctattttaagattctactatggatttaggtcgttgaaggtgaagaaaatcgcaaaattctga 5058563  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||||||||||| || |||||||    
T  5058562 attttaggatttaagtcgggatttt 5058538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 26281306 - 26281439
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||||     
T  26281306 gaaatcgttaaatcgcaa-caaaatcgatggattttgcttattttggaattctacaatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctga 26281404  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||| ||||||| || | ||||| || ||||||    
T  26281405 attttatgatttaagtcggaattttgacaacaatg 26281439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 39182392 - 39182269
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||||   |||||||||||||| | ||||||||||||||||| || |||||||||||| |    
T  39182392 gaaattgtaaaatcgcaaccaaaatcgatggattttgcctattttgggattctactatggatttcagtcgttgaaggtgaag-aagtcgcaaaatcctag 39182294  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||||||||||| ||||||||||    
T  39182293 attttaggatttaagtcaggatttt 39182269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 7730339 - 7730472
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||||||||| | ||||||  ||||||||| ||||| ||||| ||| |||||||||||| |||||||| |||||    
T  7730339 gaaatcgtaaaatctcaatcaaaatcgatggatttttcctattttggaattctactgtggatttgagttgttaaaggtgaagaaagtcgcaaaa-cctgg 7730437  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| |||||||||| || ||||||    
T  7730438 attttaggatttaagtcaggattttgacaacaatg 7730472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 11326519 - 11326406
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||| || |||||||| |||||||| |||||||||||||| | ||||| |||||||||||||| ||||||||||||      
T  11326519 gaaattgtaaaatcgcaatcaaaatcgatagattttgcctattttaagattctactatggattttagtcgctgaaggtgaagaaagtcgcaaaatcctaa 11326420  T
Q  186 attttaggatttaa 199  Q
    ||||||||||||||    
T  11326419 attttaggatttaa 11326406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 8343796 - 8343908
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||||||||  |||||  ||||||||| | ||||||   |||||||||||||| |||||||||||||||||||||| ||||||||||| ||    
T  8343796 gaaatcgtaaaatcgcaattaaaattgatggatttttcatattttgggattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatccagg 8343895  T
Q  186 attttaggattta 198  Q
    |||||||||||||    
T  8343896 attttaggattta 8343908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 11325111 - 11324988
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||| |||||| |||||| | || ||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||     
T  11325111 gaaatcgtaaattcgcaatcaaaatta-tgaattttgcctattttagaattctattatggatttgagtcgttgaaggtgaagaaaatcccaaaatcatga 11325013  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    |||||||||||||| || |||||||    
T  11325012 attttaggatttaagtcgggatttt 11324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 22687653 - 22687793
Alignment:
Q  79 tttgtatgaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaa 178  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||| ||||||   ||||| | |||||| ||||| ||||||| |||||||| |||||||    
T  22687653 tttgtaagaaatcgtaaaatcgcaatcaaaatcgatggattttgcctattttgggattctgcgatggatttgagttgttgaagttgaagaaagtcgcaaa 22687752  T
Q  179 atcctggattttaggatttaaatcaggattttaactacaat 219  Q
     ||||| |||||||||||||| || ||||||| || |||||    
T  22687753 ttcctgaattttaggatttaagtcgggattttgacaacaat 22687793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 24725473 - 24725609
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||| |||||| || ||||||  ||||||||||| ||||||   |||||||||||||| ||||| |||||||||||||||| ||| |||||| |||    
T  24725473 gaaatcgtcaaatcgtaatcaaaattgatggattttgcctattttgcgattctactatggatttgagttgttgaaggtgaagaaagtcgtaaaatcttgg 24725572  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| || ||||||| || ||||||||    
T  24725573 attttaggatttaagtctggattttgacaacaatgat 24725609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 539 - 651
Target Start/End: Original strand, 47335590 - 47335702
Alignment:
Q  539 aatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatcattggaacatcttcctcttcgatcaagcat 638  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||||  |||||||||| |||||||| ||||| || ||||||||||| | |||| |||    
T  47335590 aatatttgctgctatttaaattatattaatattttccaacaataagttattataaaacttattggaaagcattgaaatatcttcctctttgttcaaacat 47335689  T
Q  639 ccttcattcatct 651  Q
    |||||||||||||    
T  47335690 ccttcattcatct 47335702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 8330042 - 8330177
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgga 186  Q
    |||||||||||||||||  |||||||||| ||||| | ||||||   |||||||||||||| ||| |||||||||||||||||| |||||||||| || |    
T  8330042 aaatcgtaaaatcgcaattaaaatcaatgaatttttcctattttgggattctactatggatttgaatcgttgaaggtgaagaaagtcgcaaaatcatgaa 8330141  T
Q  187 ttttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||| |||||  |||||||||| || ||||||||    
T  8330142 ttttagaatttaggtcaggattttgacaacaatgat 8330177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 8346529 - 8346653
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||||||||  |||||| ||||||||| | ||||||   |||||||||||||| |||||||||||||||||||||| ||||||||||||      
T  8346529 gaaatcgtaaaatcgcaattaaaatcgatggatttttcctattttgggattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatcctaa 8346628  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||||||  |||||  ||||||||||    
T  8346629 attttaatatttaggtcaggatttt 8346653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 8571367 - 8571252
Alignment:
Q  95 aaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttagga 194  Q
    ||||||||| ||||||| |||| ||||   |||||||  |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||    
T  8571367 aaatcgcaatcaaaatcgatggtttttctctattttaggattctactatggatttgagtcgttaaaggtgaagaaagtcgcaaaatcctggattttatga 8571268  T
Q  195 tttaaatcaggatttt 210  Q
    ||||| || |||||||    
T  8571267 tttaagtcgggatttt 8571252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 9685240 - 9685375
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||| |||||||||||  |||||| ||||||||||  |||||| |||||||| ||||||| |||||||||||||||||| ||| ||||||||||||      
T  9685240 gaaatcataaaatcgcaattaaaatcgatggattttgtctattttgaaattctaatatggatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctaa 9685339  T
Q  186 attttaggatttaaatcaggattttaactacaatga 221  Q
    |||||||||| ||| ||  |||||| || |||||||    
T  9685340 attttaggatataagtcgagattttgacaacaatga 9685375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 17811480 - 17811385
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatc 181  Q
    |||||||||||||||||| ||||||| || |||||||  ||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||    
T  17811480 gaaatcgtaaaatcgcaatcaaaatcgatcgattttgtctattttaaaattctactatggatttgagtcgttgaaggtgaaaaaagtcacaaaatc 17811385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 5715422 - 5715290
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||| ||||||| ||| ||||||||||||||  |||||||||||| || | ||| |||||||||| | ||| |||||||||||||     
T  5715422 gaaatcgtaaaatcacaatcaaaatcgatgaattttgcttattttggaattctactatgaatttaagttgttgaaggtgta-aaagtcgcaaaatcctga 5715324  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    |||||||||||||| || ||||||| || |||||    
T  5715323 attttaggatttaagtcgggattttgacaacaat 5715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 24990067 - 24990180
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||| |||| ||||||| ||||||||||| |||||||  |||||||||||||| |||||||||| |||| |||||| || |||||||||      
T  24990067 gaaatcgtaaaattgcaatcaaaatcgatggattttgcctattttaggattctactatggatttgagtcgttggaggtaaagaaagtcacaaaatcctaa 24990166  T
Q  186 attttaggatttaa 199  Q
    ||||| ||||||||    
T  24990167 atttttggatttaa 24990180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 27509939 - 27510052
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||  ||| ||||||| |||||| |||||||||||| ||| ||| |||||| | ||||||||||||||||||||||      
T  27509939 gaaatcgtaaaatcgcaatcaaaattgatgaattttgcctatttttaaattctactatagatttgaatcgttggatgtgaagaaaatcgcaaaatccttt 27510038  T
Q  186 attttaggatttaa 199  Q
    ||||||| ||||||    
T  27510039 attttagaatttaa 27510052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 44944841 - 44944978
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaag----gtgaagaaaatcgcaaaatc 181  Q
    ||||| |||||||| ||| ||||||| ||||||||||  |||||||  |||||||||||||| ||| |||||||||    ||||||||| ||||||||||    
T  44944841 gaaatagtaaaatcccaatcaaaatcgatggattttgactattttaggattctactatggatttgaatcgttgaaggtgagtgaagaaagtcgcaaaatc 44944940  T
Q  182 ctggattttaggatttaaatcaggattttaactacaat 219  Q
    ||| |||||||||||||| || ||||||| || |||||    
T  44944941 ctgaattttaggatttaagtcgggattttgacaacaat 44944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 4247489 - 4247356
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||| ||||||||||| ||||||| ||| ||||||| ||||||   |||||||||||||| | ||| |||||| ||||||||| |  ||||||||||     
T  4247489 gaaatcataaaatcgcaatcaaaatcgatgaattttgcctattttgggattctactatggatttaagttgttgaaagtgaagaaagttacaaaatcctga 4247390  T
Q  186 attttaggatttaaatcaggattttaactacaat 219  Q
    ||||||||||||||||  ||||||| || |||||    
T  4247389 attttaggatttaaattgggattttgacaacaat 4247356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 536 - 644
Target Start/End: Complemental strand, 47337923 - 47337811
Alignment:
Q  536 agcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatc----attggaacatcttcctcttcgat 631  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||  ||||||| |    || | ||||||||||| || |||    
T  47337923 agcaatatttgctactatttaatttatatttatattttccaacaataagtccttatagaacttgttggaaagcatcgatcgaaacatcttcctttttgat 47337824  T
Q  632 caagcatccttca 644  Q
    ||| |||||||||    
T  47337823 caaacatccttca 47337811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 21846433 - 21846554
Alignment:
Q  97 atcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatt 196  Q
    ||||||| ||||||| || |||||| | | ||||| ||||||||||||||| |||||||||||| ||||| ||| ||||||||||||| ||||||| |||    
T  21846433 atcgcaatcaaaatcgattgattttacctgttttagaattctactatggatgtgagtcgttgaatgtgaa-aaagtcgcaaaatcctgaattttagaatt 21846531  T
Q  197 taaatcaggattttaactacaat 219  Q
    ||| || ||||||| || |||||    
T  21846532 taagtcgggattttgacaacaat 21846554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 1977785 - 1977692
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaa 179  Q
    |||||| ||||||||||| ||||||| | | ||||||| |||||||  |||||||||||||| |||||||||||||||| | ||||||||||||    
T  1977785 gaaatcctaaaatcgcaatcaaaatcgacgaattttgcatattttaggattctactatggatttgagtcgttgaaggtggaaaaaatcgcaaaa 1977692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 21157682 - 21157761
Alignment:
Q  8 acaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    ||||||||||||||||||||||||| | |||  ||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  21157682 acaaaatacttatacataaatgactcaaaaac-tggacaaaattcttcaaaatcctttaaaattctgcgattttgtatgaa 21157761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26565540 - 26565625
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||| ||||||||||||||||||||||||||||| |||| | |||||||| |||| ||||||||||||||| |  |||||||||||||    
T  26565540 aaagtccacaaaatacttatacataaatgactaa-aaag-tagacaaaatacttccaaaccctttaaaatcctaggattttgtatgaa 26565625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30294390 - 30294304
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||| |||||||||| |||||||||||||||||| ||| |||||||||||  ||||||||||||||||||  |  |||||||||||||    
T  30294390 aaagtccacaaaatagttatacataaatgactaa-aaaaatggacaaaatctttcaaaaccctttaaaattctatgattttgtatgaa 30294304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 26617472 - 26617596
Alignment:
Q  90 tcgtaaaatcgcaaacaaaatcaatggattttgcttat--tttaaaattctactat--ggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||| ||||||| || |||||||| |||  |||| |||||||||||  | || |  ||||||||||||||| ||| |||||||||||||     
T  26617472 tcgtaaaatcgcaatcaaaatcgatagattttgcctatattttagaattctactatatgaatttatgtcgttgaaggtgaaaaaagtcgcaaaatcctga 26617571  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||||||||||| || |||| |||||    
T  26617572 attttaggattaaagtcagaatttt 26617596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 30294275 - 30294195
Alignment:
Q  116 gattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||||||| |||||| | ||| | |||||||| |||||||   |||||||| |||||| |||||||||||||||||||||||||    
T  30294275 gattttgcctattttgagattttgctatggatttgagtcg---aaggtgaataaaatcacaaaatcctggattttaggatttaa 30294195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24915796 - 24915863
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaa 69  Q
    |||| ||||||||||||||||| ||||||| ||| ||| |||||||||||||||| |||| ||||||||    
T  24915796 aaagtccacaaaatacttatacgtaaatgattaa-aaaaatggacaaaattcttcgaaactctttaaaa 24915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 4574558 - 4574480
Alignment:
Q  132 aaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    ||||||| | ||| || ||| |||||||||||||  ||| ||||||||| |||||||||||||||||| ||| ||||||    
T  4574558 aaattctgcaatgaatttgaatcgttgaaggtgagtaaagtcgcaaaattctggattttaggatttaagtcatgatttt 4574480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 8629995 - 8630090
Alignment:
Q  127 ttttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||| |||||||||||||| ||||||||||||| | |  ||| | |||||||||| |||||| ||| |||| ||  |||||| || ||||||||    
T  8629995 ttttaagattctactatggatttgagtcgttgaagttaagtaaagttgcaaaatcctagattttgggacttaagtcgcgattttgacaacaatgat 8630090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 20570872 - 20570938
Alignment:
Q  77 attttgtatgaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactat 143  Q
    ||||| || ||||||||||||| |||| ||||||| ||||||||||  |||||| | ||||||||||    
T  20570872 attttataagaaatcgtaaaattgcaatcaaaatcgatggattttgtctatttttagattctactat 20570938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 3094250 - 3094362
Alignment:
Q  87 aaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgga 186  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||| | ||||||||||| |    
T  3094250 aaatcgtaaaatcgcaatcaaaatcgatggattttgcctattttaggattctactatggatttgagtcgttgaaggtgaagaaagtagcaaaatcctgaa 3094349  T
Q  187 ttttaggatttaa 199  Q
    ||||| |||||||    
T  3094350 ttttaagatttaa 3094362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 5922182 - 5922048
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||| |||||||||| ||||||| ||||||||||  ||||||   |||||||||||||| | |||||||||||||||||||| || |||||||||||    
T  5922182 gaaatcgcaaaatcgcaatcaaaatcgatggattttgtctattttgggattctactatggatataagtcgttgaaggtgaagaaagtcacaaaatcctgg 5922083  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || ||||||| || ||||||    
T  5922082 attttaggatttaagtcgggattttgacaacaatg 5922048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 15294803 - 15294666
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||||   |||||||||| ||| |||||||||||||||||| ||| |||||||||||||     
T  15294803 gaaattgtaaaatcgcaatcaaaatcgatggattttgcctattttggtattctactatcgatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctga 15294704  T
Q  186 attttaggatttaaatcaggattttaactacaatgatg 223  Q
    |||||||||||||| || ||||||| || ||| |||||    
T  15294703 attttaggatttaagtcgggatttttacaacattgatg 15294666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 15475172 - 15475035
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| |||||||||||| ||||||| ||||||||||| ||||||   |||||||||| ||| |||||||||||||||||| ||| |||||||||||||     
T  15475172 gaaattgtaaaatcgcaatcaaaatcgatggattttgcctattttggtattctactatcgatttgagtcgttgaaggtgaaaaaagtcgcaaaatcctga 15475073  T
Q  186 attttaggatttaaatcaggattttaactacaatgatg 223  Q
    |||||||||||||| || ||||||| || ||| |||||    
T  15475072 attttaggatttaagtcgggatttttacaacattgatg 15475035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 22910198 - 22910311
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||| ||||||||| ||| ||||||||      
T  22910198 gaaatcttaaaatcgcaatcaaaatcaatggattttgcctattttaagattctactatagatttgagtcgttgaatgtgaagaaagtcgtaaaatcctaa 22910297  T
Q  186 attttaggatttaa 199  Q
    ||||||||||||||    
T  22910298 attttaggatttaa 22910311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 11879733 - 11879597
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||| | |||||||  |||||||||| ||| |||||||||||| ||||||||| | |||||||||||     
T  11879733 gaaatcgtaaaatcgcaatcaaaatcgatgaatttttcctattttaggattctactatagatttgagtcgttgaaagtgaagaaagttgcaaaatcctga 11879634  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| |||| ||||| || ||||||||    
T  11879633 attttaggatttaagtcagaattttgacaacaatgat 11879597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 11897149 - 11897013
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| ||| ||||| | |||||||  |||||||||| ||| |||||||||||| ||||||||| | |||||||||||     
T  11897149 gaaatcgtaaaatcgcaatcaaaatcgatgaatttttcctattttaggattctactatagatttgagtcgttgaaagtgaagaaagttgcaaaatcctga 11897050  T
Q  186 attttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||||||||| |||| ||||| || ||||||||    
T  11897049 attttaggatttaagtcagaattttgacaacaatgat 11897013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 31424296 - 31424172
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||   ||||| |||||||| |||||||||||| | ||||||| ||| |||||||||     
T  31424296 gaaatcgtaaaatcgcaatcaaaatcaatggattttgcctattttgggattcttctatggatttgagtcgttgaaagggaagaaagtcgtaaaatcctga 31424197  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||||||| |||||| ||||||||||    
T  31424196 attttagaatttaagtcaggatttt 31424172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 45403160 - 45403049
Alignment:
Q  88 aatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggat 187  Q
    |||||||||||||||| ||||||| |||||||||||||||||| | ||||| |||||||| | ||||||||||||| |||||| |||||||||| |||||    
T  45403160 aatcgtaaaatcgcaatcaaaatcgatggattttgcttattttgagattcttctatggatttaagtcgttgaaggtcaagaaagtcgcaaaatcttggat 45403061  T
Q  188 tttaggatttaa 199  Q
    ||||| ||||||    
T  45403060 tttagaatttaa 45403049  T

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Target: chr8; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 6810957 - 6810861
Alignment:
Q  83 tatgaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaat 180  Q
    |||||||||||||||||| || ||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6810957 tatgaaatcgtaaaatcgtaatcaaaatcgatg-attttgcctattttaaaattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaat 6810861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 19704451 - 19704565
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcc-tg 184  Q
    ||||||||||||| |||| ||||||| ||||||||||| |||| |  ||||||||||||||| |||||||||||||||||||||| |||||||| || ||    
T  19704451 gaaatcgtaaaattgcaatcaaaatcgatggattttgcctattatggaattctactatggatttgagtcgttgaaggtgaagaaagtcgcaaaaaccttg 19704550  T
Q  185 gattttaggatttaa 199  Q
     |||||| |||||||    
T  19704551 aattttaagatttaa 19704565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 29384313 - 29384436
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| |||| || ||| ||||||| ||||||   ||| |||||||||| |||||||||||||||||||||| ||||||||||   |    
T  29384313 gaaatcgtaaaatcgcaatcaaa-tcgatgaattttgcctatttttggattatactatggatttgagtcgttgaaggtgaagaaagtcgcaaaatctaag 29384411  T
Q  186 attttaggatttaaatcaggatttt 210  Q
    ||||||||||||||| | |||||||    
T  29384412 attttaggatttaaacctggatttt 29384436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 27836460 - 27836569
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||| ||||||| | || ||||||  ||| ||||||||||||||| ||||||||||||||| | ||| |||||||||||| |||| ||||||||||||     
T  27836460 gaaattgtaaaattgtaatcaaaattgatgaattttgcttattttagaattctactatggatttcagttgttgaaggtgaataaaaccgcaaaatcctga 27836559  T
Q  186 attttaggat 195  Q
    ||||||||||    
T  27836560 attttaggat 27836569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 86 - 199
Target Start/End: Complemental strand, 17647126 - 17647013
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||| ||||  ||| ||||||| ||| ||||| | ||||||   ||||||||||| || |||||||||||||||||||||| |||||||||||||     
T  17647126 gaaatcgttaaataacaatcaaaatcgatgaatttttcctattttgggattctactatgaatttgagtcgttgaaggtgaagaaagtcgcaaaatcctga 17647027  T
Q  186 attttaggatttaa 199  Q
    |||||| |||||||    
T  17647026 attttatgatttaa 17647013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 23142308 - 23142223
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaa 171  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||||||  |||||||||||||| | ||||||||||| |||||||||    
T  23142308 gaaatcgtaaaatcgcaatcaaaatcgatgaattttgcctattttaggattctactatggatttcagtcgttgaagttgaagaaaa 23142223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 477108 - 477177
Alignment:
Q  151 agtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| || ||||||    
T  477108 agtcattgaaggtgaagaaagtcacaaaatcctggattttaggatttaagtcaggattttgacaacaatg 477177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 24056618 - 24056688
Alignment:
Q  140 ctatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttt 210  Q
    |||||||| ||||||||| || ||||| ||| |||||||||||||||||||||||||||| ||| ||||||    
T  24056618 ctatggatttgagtcgttaaatgtgaataaagtcgcaaaatcctggattttaggatttaagtcaagatttt 24056688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 15231829 - 15231732
Alignment:
Q  114 tggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggatttta 211  Q
    |||||||||| |||||||| ||| || |||| || | ||||||||||||||||||| ||||||||||| |  | |||||||||||||||  |||||||    
T  15231829 tggattttgcctattttaagattttagtatgaatttcagtcgttgaaggtgaagaacatcgcaaaatcttaaagtttaggatttaaatcgagatttta 15231732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 15761390 - 15761436
Alignment:
Q  40 atggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatg 86  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  15761390 atggacaaaatccttcaaaaccctttaaaatctttcgactttgtatg 15761436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 15761489 - 15761569
Alignment:
Q  140 ctatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    ||||| || ||||||||||||||| || ||| || |||||||||||| |||||||||||| ||  |||||| || ||||||    
T  15761489 ctatgaatttgagtcgttgaaggtaaataaactcacaaaatcctggagtttaggatttaagtcgagattttgacaacaatg 15761569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 7489325 - 7489393
Alignment:
Q  128 tttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaa 199  Q
    |||| |||||||||| |||| | ||||||||||||||||||||   ||||||| ||| |||||| |||||||    
T  7489325 tttagaattctactacggattttagtcgttgaaggtgaagaaa---gcaaaattctgtattttacgatttaa 7489393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 9212251 - 9212300
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaat 135  Q
    |||||| ||||||||||| ||||||| ||||||||| | |||||||||||    
T  9212251 gaaatcttaaaatcgcaatcaaaatcgatggatttttcctattttaaaat 9212300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 93702 - 93834
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    |||||||||||||||||| ||||||| |||||||| || ||||||| |||||| |||||||| ||||| ||||| ||||||||||||  |||||| ||||    
T  93702 gaaatcgtaaaatcgcaatcaaaatcgatggatttcgcctattttagaattcttctatggatttgagttgttgagggtgaagaaaat--caaaattctgg 93799  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    |||||||||||||| || ||||||| || ||||||    
T  93800 attttaggatttaagtcgggattttgacaacaatg 93834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 96 - 231
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggatttt-gcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctg 184  Q
    ||||| |||||||| ||| ||||||| ||||||||| || ||||||| |||| |||||||||| |||||||||||| ||||||||| |||||||||||||    
T  96 gaaattgtaaaatctcaatcaaaatcgatggattttcgcctattttagaattttactatggatttgagtcgttgaacgtgaagaaagtcgcaaaatcctg 195  T
Q  185 gattttaggatttaaatcaggattttaactacaatg 220  Q
     |||||||||||||| || |||| ||| | ||||||    
T  196 cattttaggatttaagtcgggatcttatcaacaatg 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 7451 - 7585
Alignment:
Q  86 gaaatcgtaaaatcgcaaacaaaatcaatggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctgg 185  Q
    ||||||||||||||||||  |||||| ||| ||||||| |||||||  |||||||||||||| |   ||||||||||| |||||| |||||||||||||     
T  7451 gaaatcgtaaaatcgcaattaaaatcgatgaattttgcctattttaggattctactatggattttgttcgttgaaggtaaagaaagtcgcaaaatcctga 7550  T
Q  186 attttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||| |||||| || ||||| |||| ||||||    
T  7551 attttagaatttaagtcgggattctaacaacaatg 7585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 9070 - 9152
Alignment:
Q  140 ctatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatgat 222  Q
    |||||||| |||||||||||||||||| |||||| |||||||||  ||||||  ||||||||||||||||| || ||||||||    
T  9070 ctatggatttgagtcgttgaaggtgaataaaatcacaaaatcctacattttaaaatttaaatcaggattttgacaacaatgat 9152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48690 - 48776
Alignment:
Q  1 aaaggccacaaaatacttatacataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||| |||||||||| |||||||||||||||||  ||| ||| ||||||| ||||||||||| |||||||| |||| |||||||||||    
T  48690 aaagtccacaaaataattatacataaatgactagaaaa-atgaacaaaatccttcaaaacccattaaaatcatgcggttttgtatgaa 48776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 48839 - 48918
Alignment:
Q  141 tatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaactacaatg 220  Q
    ||||||| |||||||||||||||||| ||| | ||||||| || ||||||||||||||| || | ||||| || ||||||    
T  48839 tatggatttgagtcgttgaaggtgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaacaatg 48918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 61304 - 61370
Alignment:
Q  21 acataaatgactaacaaagatggacaaaattcttcaaaaccctttaaaatcttgcgattttgtatgaa 88  Q
    |||||||||||||  ||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  61304 acataaatgactagaaaa-atggacaaaatccttcaaaacccattaaaatcctgcggttttgtatgaa 61370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 37191 - 37296
Alignment:
Q  115 ggattttgcttattttaaaattctactatggatctgagtcgttgaaggtgaagaaaatcgcaaaatcctggattttaggatttaaatcaggattttaact 214  Q
    ||||||| | |||||||| ||||| |||||||| ||||| |||||||||||| ||||| ||||||| ||| ||||||  |||||| || | ||||| ||     
T  37191 ggattttacctattttaagattctgctatggatttgagttgttgaaggtgaataaaattgcaaaattctgaattttaaaatttaagtcggcattttgaca 37290  T
Q  215 acaatg 220  Q
    ||||||    
T  37291 acaatg 37296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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