View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3555_high_10 (Length: 246)
Name: NF3555_high_10
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6499930 - 6499699
Alignment:
| Q |
1 |
agtatgaagttatatatggtttggttcaatgtacacctgatttgtctgaaactgattgtaattcatgtttggttgagaatcttcaacaaattcctagttg |
100 |
Q |
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| T |
6499930 |
agtatgaagttatatatggtttggttcaatgtacacctgatttgtctgaaactgattgtaattcatgtttggttgagaatcttcaacaaattcctagttg |
6499831 |
T |
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| Q |
101 |
ttgtaataataagattggtggaagagttgttaggcctagttgtaacatgagatttgaaacttcttaccttttttatgagcctagagcatcgccgccgcca |
200 |
Q |
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| T |
6499830 |
ttgtaataataagattggtggaagagttgttaggcctagttgtaacatgagatttgaaacttcttaccttttttatgagcctagagcatcgc---cgcca |
6499734 |
T |
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| Q |
201 |
ccgccgccatcatcatctcctccaccagccactac |
235 |
Q |
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| T |
6499733 |
ccgccgccatcatcacctcctccaccagccactac |
6499699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 6524078 - 6524140
Alignment:
| Q |
98 |
ttgttgtaataataagattggtggaagagttgttaggcctagttgtaacatgagatttgaaac |
160 |
Q |
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| T |
6524078 |
ttgttgtaaagataagaaaggtggaagagttgttaggcctagttgtaacatgagatttgaaac |
6524140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 6523989 - 6524051
Alignment:
| Q |
12 |
atatatggtttggttcaatgtacacctgatttgtctgaaactgattgtaattcatgtttggtt |
74 |
Q |
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||||||||| | ||||| ||||| |||||||| ||||| | ||||||||||||||||||||| |
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| T |
6523989 |
atatatggtcttgttcagtgtacgcctgatttatctgagtcagattgtaattcatgtttggtt |
6524051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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