View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3555_high_13 (Length: 225)
Name: NF3555_high_13
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_high_13 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 2138 - 2028
Alignment:
| Q |
7 |
aataggacgaggaagcaaaatactacctagtcaagataaaacaaaccaaaataaaggacataacacaatgacgttgacgacaaaataatgacccataaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2138 |
aataggacgaggaagcaaaatactacctagtcaaaataaaacaaaccaaaataaaggacataacacaatgacgttgacgacaaaataatgacccataaca |
2039 |
T |
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| Q |
107 |
atactaaacga |
117 |
Q |
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||| ||||||| |
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| T |
2038 |
atattaaacga |
2028 |
T |
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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 21449399 - 21449509
Alignment:
| Q |
7 |
aataggacgaggaagcaaaatactacctagtcaagataaaacaaaccaaaataaaggacataacacaatgacgttgacgacaaaataatgacccataaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21449399 |
aataggacgaggaagcaaaatactacctagtcaaaataaaacaaaccaaaataaaggacataacacaatgacgttgacgacaaaataatgacccataaca |
21449498 |
T |
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| Q |
107 |
atactaaacga |
117 |
Q |
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||| ||||||| |
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| T |
21449499 |
atattaaacga |
21449509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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