View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3555_high_3 (Length: 339)
Name: NF3555_high_3
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_high_3 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 8042380 - 8042689
Alignment:
| Q |
15 |
cacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaat |
114 |
Q |
| |
|
||||||| |||||||| ||||||| ||| || |||| ||||||| |||| || ||| | ||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
8042380 |
cacttggctctgttgcatttgcctttgctggacacattgtggtgctggagatccaagcaacaattccgtctacaccggagaaaccatctaagggtccaat |
8042479 |
T |
|
| Q |
115 |
gtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8042480 |
gtggaaaggagttgttgttgcctacattattgttgctttgtgctacttccctgttgctattatcggttattggatatttggcaatggggttaaggataat |
8042579 |
T |
|
| Q |
215 |
atcctcgtgtcattggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaatttaattctt |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8042580 |
atcctcgtgtctttggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagttatcaggtaaaatttaattctt |
8042679 |
T |
|
| Q |
315 |
ttacaaaact |
324 |
Q |
| |
|
|||||||||| |
|
|
| T |
8042680 |
ttacaaaact |
8042689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 7971333 - 7971031
Alignment:
| Q |
15 |
cacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaat |
114 |
Q |
| |
|
||||||| |||||||| ||||||| ||| || ||||| |||||| |||| || ||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
7971333 |
cacttggctctgttgcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtctacacctgagaaaccatctaagggtccaat |
7971234 |
T |
|
| Q |
115 |
gtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataat |
214 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7971233 |
gtggaaaggagttattgttgcatacattgttgttgctttgtgctactttcctgttgctcttatcggttattggatatttggcaatggggttaaggataat |
7971134 |
T |
|
| Q |
215 |
atcctcgtgtcattggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaatttaattctt |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7971133 |
atcctcgtgtctttggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctaccaggtaaaatttaattctt |
7971034 |
T |
|
| Q |
315 |
tta |
317 |
Q |
| |
|
||| |
|
|
| T |
7971033 |
tta |
7971031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 23 - 306
Target Start/End: Original strand, 8032484 - 8032767
Alignment:
| Q |
23 |
tctgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaatgtggaaag |
122 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||||| | || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8032484 |
tctgttgcatttgcctatgctggacataatgtggtgctcgagatccaagcaacaattccatctacacctgagaaaccatctaagggtccaatgtggagag |
8032583 |
T |
|
| Q |
123 |
gagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataatatcctcgt |
222 |
Q |
| |
|
| |||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| | ||||| ||||| |||||||||||| |||| | |
|
|
| T |
8032584 |
gtgttgttgttgcctacattgttgttgctttgtgctactttcctgttgctattattggttattgggtgtttggtaatgaagttaaggataatgtcctaat |
8032683 |
T |
|
| Q |
223 |
gtcattggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaatt |
306 |
Q |
| |
|
|| |||||||| |||| |||||| || ||||| ||||| | ||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8032684 |
ctctttggaaaaaccagtttggctcatcgcaatatctaacctatttgtagttttacatgtaattggaagctatcaggtaaaatt |
8032767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 27 - 307
Target Start/End: Complemental strand, 7978254 - 7977974
Alignment:
| Q |
27 |
ttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaatgtggaaaggagt |
126 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| || || ||| | ||||| || || ||||| ||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
7978254 |
ttgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttccaatgtggagaggagt |
7978155 |
T |
|
| Q |
127 |
tgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataatatcctcgtgtca |
226 |
Q |
| |
|
||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| ||||||||||| ||||||||| | | | | |||||| | || |
|
|
| T |
7978154 |
tgttgttgcatacattgttgttgctttgtgttacttccctgttgctcttattggttactggatatttggaaatgaggttgatggtgacatcctcatatct |
7978055 |
T |
|
| Q |
227 |
ttggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaattt |
307 |
Q |
| |
|
|| | || || || ||||||||||||| |||||| | ||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
7978054 |
ttacagaaacctgcatggcttattgcaacagctaacatgtttgttgttattcatgtgattggaagctatcaggtaaaattt |
7977974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 41381770 - 41381475
Alignment:
| Q |
15 |
cacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41381770 |
cacttggttctgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaat |
41381671 |
T |
|
| Q |
115 |
gtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataat |
214 |
Q |
| |
|
||||||||||||| | |||||||||| |||||||||| |||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
41381670 |
gtggaaaggagttatctttgcctacatggttgttgctttgtgctactttcctgttgctattatcggttattatgtgtttggcaatgaggttaaagataat |
41381571 |
T |
|
| Q |
215 |
atcctcgtgtcattggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaatttaat |
310 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
41381570 |
atcctcatgtctttggaaaaaccagcttggcttattgcaatggctaacttttttgtggttttacatgtcattggaagctatcaggtaaaatttaat |
41381475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 43854448 - 43854622
Alignment:
| Q |
25 |
tgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaatgtggaaagga |
124 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||||| |||||| | |||||||| || ||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
43854448 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
43854547 |
T |
|
| Q |
125 |
gttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaat |
199 |
Q |
| |
|
||| | | || || ||| |||| ||||| || || |||||||||||| |||| || |||||||| ||||||||| |
|
|
| T |
43854548 |
gttttattagcatatattgttgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaat |
43854622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 2631 - 2339
Alignment:
| Q |
15 |
cacttggttctgttgcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaat |
114 |
Q |
| |
|
||||||| ||| | || ||||||||||| || ||||||||||| |||| || ||| | ||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
2631 |
cacttggctctatcgcgtttgcctatgccggacacaatgtggtactggagatccaagcaacaattccgtctacacctgagaaaccatctaagggtccaat |
2532 |
T |
|
| Q |
115 |
gtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataat |
214 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||||| | |||||||| ||||||||||| || ||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
2531 |
gtggagaggtgttgttgttgcctacattgttgttgctgtgtgctactttcctgttgctataattggttattggatgtttggcaatcaagttaaggataat |
2432 |
T |
|
| Q |
215 |
atcctcgtgtcattggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaattt |
307 |
Q |
| |
|
||||| | || |||||||| || |||||||| |||||||| ||||| | ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2431 |
gtcctcatctctttggaaaaacctgcttggctcattgcaatatctaacctatttgttgttttacatgtaattggaagctatcaggtaaaattt |
2339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 304
Target Start/End: Complemental strand, 14198203 - 14197928
Alignment:
| Q |
29 |
gcttttgcctatgcaggtcacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaatgtggaaaggagttg |
128 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||| ||||| ||| | ||||| ||||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
14198203 |
gcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatctacaccggaaaaaccatctaagggtccaatgtggagaggagtga |
14198104 |
T |
|
| Q |
129 |
ttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaatgaggttaaggataatatcctcgtgtcatt |
228 |
Q |
| |
|
|||| ||||| || |||| ||||| |||||||| || |||||| | || ||||||||||| ||||| ||| ||| | || || || ||| || | || |
|
|
| T |
14198103 |
ttgtagcctatatagttgtagctttgtgctactttccagttgctctcattggttattggatgtttggaaatagtgttgatgacaacattctcatgacttt |
14198004 |
T |
|
| Q |
229 |
ggaaaacccagcttggcttattgcaatggctaacttttttgtggttttgcatgtgattggaagctatcaggtaaaa |
304 |
Q |
| |
|
|| || ||| ||||||||||||||||| ||| | ||||| ||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
14198003 |
agagaaaccaaactggcttattgcaatggcaaacatgtttgttgttatccatgttattggaagctaccaggtaaaa |
14197928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University