View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3555_high_6 (Length: 272)
Name: NF3555_high_6
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_high_6 |
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| [»] scaffold0173 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 12931151 - 12931236
Alignment:
| Q |
13 |
catcatcatcgccacc-aacataccatttctagatccatcttttcatcaccattaaccaaatatgtatttacatcaaaacacaaca |
97 |
Q |
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| T |
12931151 |
catcatcatcgccacccaacataccatttctagatccatcttctcaccatcattaaccaaatatgtatttacatcaaaacacaaca |
12931236 |
T |
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Target: scaffold0173 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 2769 - 2812
Alignment:
| Q |
211 |
gagatatgtctactggtgactctttagatatgacaccacaagat |
254 |
Q |
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| T |
2769 |
gagatatgtctactggtgactctttagatatgacaccacaagat |
2812 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 55108484 - 55108514
Alignment:
| Q |
217 |
tgtctactggtgactctttagatatgacacc |
247 |
Q |
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| T |
55108484 |
tgtctactggtgactctttagatatgacacc |
55108514 |
T |
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