View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3555_high_8 (Length: 250)
Name: NF3555_high_8
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 32812904 - 32812780
Alignment:
| Q |
112 |
aggaggaagagccacaataatatttaccccatcatcaccaccttcacctccgtgaaaagaagggaacaatagtataatatccttcttatgataaactact |
211 |
Q |
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| T |
32812904 |
aggaggaagagccacaataatatttaccccatcatcaccaccttcaactccgtgaaaagaagggaacaatagtataatatccttcttatgataaaccact |
32812805 |
T |
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| Q |
212 |
ggacaacaatacttaggcttccccc |
236 |
Q |
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| T |
32812804 |
ggacaacaatacttaggcttccccc |
32812780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 32813570 - 32813457
Alignment:
| Q |
1 |
aaattaaatgtctgaattcttgtgtccaaccaaaaattattcattttcgggcatctatatagatcaaatcaagaacatgtaaaataggcccttaaagttt |
100 |
Q |
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| T |
32813570 |
aaattaaatgtttgaattcttgtgtccaactaaaaattattcgttttcgggcatctatatagatcaaatcaagaacctgtaaaataggcccttaaagttt |
32813471 |
T |
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| Q |
101 |
tgcatttccttagg |
114 |
Q |
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| T |
32813470 |
tgcatttctttagg |
32813457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 32830486 - 32830310
Alignment:
| Q |
60 |
tagatcaaatcaagaacatgtaaaataggcccttaaagttttgcatttccttaggaggaagagccacaataatatttaccccatcatcaccaccttcacc |
159 |
Q |
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||||| ||||||| || ||||||||| | |||||| |||| |||||| | ||||||||||||| ||||||||||| || ||| ||||||||||||| |
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| T |
32830486 |
tagattaaatcaaaaaagtgtaaaataaactcttaaatttttccatttcatctcgaggaagagccactataatatttactccgtcaccaccaccttcacc |
32830387 |
T |
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| Q |
160 |
tccgtgaaaagaagggaacaatagtataatatccttcttatgataaactactggacaacaatacttaggcttccccc |
236 |
Q |
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||| | ||||||||| || |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
32830386 |
tccattaaaagaaggaaataatagtataatatccttcctatgataaaccacaggacaacaatacttaggcttccccc |
32830310 |
T |
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