View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3555_high_9 (Length: 248)

Name: NF3555_high_9
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3555_high_9
NF3555_high_9
[»] chr1 (5 HSPs)
chr1 (72-248)||(7304916-7305092)
chr1 (154-248)||(7306173-7306267)
chr1 (9-43)||(7305236-7305270)
chr1 (77-113)||(44276359-44276395)
chr1 (137-181)||(46110452-46110496)
[»] chr2 (4 HSPs)
chr2 (72-248)||(1310504-1310680)
chr2 (77-233)||(19398642-19398797)
chr2 (77-233)||(23232288-23232442)
chr2 (80-248)||(23233542-23233708)
[»] chr3 (2 HSPs)
chr3 (43-233)||(37416247-37416435)
chr3 (77-117)||(36175496-36175536)
[»] chr8 (8 HSPs)
chr8 (93-233)||(30673957-30674095)
chr8 (77-233)||(38697985-38698141)
chr8 (80-248)||(32553753-32553919)
chr8 (80-233)||(32552415-32552564)
chr8 (80-233)||(39173235-39173387)
chr8 (80-177)||(39174572-39174669)
chr8 (136-233)||(35799570-35799666)
chr8 (84-233)||(35800828-35800976)
[»] chr6 (3 HSPs)
chr6 (80-233)||(11724569-11724724)
chr6 (77-180)||(24757054-24757155)
chr6 (77-117)||(5077715-5077755)
[»] chr5 (3 HSPs)
chr5 (148-240)||(11797445-11797537)
chr5 (137-181)||(325087-325131)
chr5 (77-180)||(28702740-28702844)
[»] chr4 (4 HSPs)
chr4 (77-180)||(39057609-39057712)
chr4 (77-117)||(42871328-42871368)
chr4 (140-233)||(23103913-23104005)
chr4 (77-180)||(35349949-35350053)
[»] chr7 (1 HSPs)
chr7 (77-180)||(10956995-10957099)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 72 - 248
Target Start/End: Complemental strand, 7305092 - 7304916
Alignment:
Q  72 ttaagtattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7305092 ttaagtattgatggtataccataagatataatggaccttcatgatcatccgatcactttttgattaaaaaagatcgaacggttaaatttaaaagaattaa 7304993  T
Q  172 taaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaaaagctaatgatcttt 248  Q
    ||||||||| |||||||||| |||||||||||  ||| ||||| ||||| |||||||||||| |||||| |||||||    
T  7304992 taaggtctatagtggacaaacattgtttgtgttccactttagacatttaaagttaaagttaacagctaaggatcttt 7304916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 7306173 - 7306267
Alignment:
Q  154 taaatttaaaataattaataaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaaaagctaatgatcttt 248  Q
    |||| |||||| |||||||||| ||||  |||||| || |||||||||||   || | ||||||||| |||||||||||| |||||| |||||||    
T  7306173 taaaattaaaagaattaataagatctatggtggaccaacattgtttgtgttctacttgagatatttaaagttaaagttaacagctaaggatcttt 7306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 7305270 - 7305236
Alignment:
Q  9 gaagaagaacttttgtcgctgttgtatacgtgagt 43  Q
    |||||||| ||||||||||||||||||||||||||    
T  7305270 gaagaagagcttttgtcgctgttgtatacgtgagt 7305236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 44276395 - 44276359
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcat 113  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  44276395 tattgatggtataccgtaacatataatggaccttcat 44276359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 46110496 - 46110452
Alignment:
Q  137 aaaaaagatcgaacggttaaatttaaaataattaataaggtctac 181  Q
    |||||||||| |||||||||| |||| | ||||||||||||||||    
T  46110496 aaaaaagatcaaacggttaaaattaacaaaattaataaggtctac 46110452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 1310504 - 1310680
Alignment:
Q  72 ttaagtattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaa 171  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  1310504 ttaagtattaatggtataccataagatataatggaccttcacgatcatccaatcactttttgattaaaaaagatcgaacagttaaatttaaaagaattaa 1310603  T
Q  172 taaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaaaagctaatgatcttt 248  Q
    ||||||||| |||||||||| |||||||||||  ||| ||||||||||| ||||||| |||| ||||||||||||||    
T  1310604 taaggtctatagtggacaaacattgtttgtgttccactttagatatttaaagttaaaattaacagctaatgatcttt 1310680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 19398642 - 19398797
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataagg 176  Q
    ||||||| |||| ||||| |||| |||||||||||||||||    | |||||||||||| | ||||||||||||||||||| ||| || ||||||||| |    
T  19398642 tattgatagtattccatatgatacaatggaccttcatgatccaatagtcactttttgat-ataaaagatcgaacggttaaaattataagaattaataaag 19398740  T
Q  177 tctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    ||||  |||||| || | ||||| ||| |||| ||||| ||||| ||||||||||||    
T  19398741 tctatggtggaccaacactgtttatgtttcactttagacatttaaagttaaagttaa 19398797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 23232442 - 23232288
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataagg 176  Q
    |||||||||||||||||||| ||||||| || |||||||||   |  ||||||||| || |||||| ||| |||||||||| |||||| |||||||||||    
T  23232442 tattgatggtataccataagctataatgtac-ttcatgatccaaccgtcacttttttataaaaaaaaatcaaacggttaaaattaaaagaattaataagg 23232344  T
Q  177 tctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    | ||  |||||| || ||| |||||||  ||| ||||| ||||| ||||||||||||    
T  23232343 tttatggtggaccaatatt-tttgtgttccactttagacatttaaagttaaagttaa 23232288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 23233542 - 23233708
Alignment:
Q  80 tgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataaggtct 179  Q
    ||||||||||||||||| ||||||| || |||||||||   |  |||||||||   |||||||||||||||||||||| |||||| ||||||||| || |    
T  23233542 tgatggtataccataagctataatgtac-ttcatgatccaaccgtcactttttttataaaaaagatcgaacggttaaaattaaaagaattaataaagttt 23233640  T
Q  180 acagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaaaagctaatgatcttt 248  Q
    |  |||||| || ||| |||||||  ||| ||||| ||||| ||||||||||||  |||||||| ||||    
T  23233641 atggtggaccaatatt-tttgtgttccactttagacatttaaagttaaagttaacggctaatgaccttt 23233708  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 37416247 - 37416435
Alignment:
Q  43 ttttttatgaagaaattggcnnnnnnnnnttaagtattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaa 142  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||| |    
T  37416247 ttttttatgaagaaattggcataaaaaaattaagtattgatggtataccataagatataatggtcttt-atgatcatccaatcattttttgattaaaa-a 37416344  T
Q  143 gatcgaacggttaaatttaaaataattaataaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    ||||||| ||||||| |||||| | ||||||||||||| ||||||  || |||||||||||  ||| ||||| ||||| ||||||||||||    
T  37416345 gatcgaatggttaaaattaaaagacttaataaggtctatagtggatcaacattgtttgtgttccactttagacatttaaagttaaagttaa 37416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 36175536 - 36175496
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatc 117  Q
    ||||||||||||||  ||| |||||||||||||||||||||    
T  36175536 tattgatggtatactgtaacatataatggaccttcatgatc 36175496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 30673957 - 30674095
Alignment:
Q  93 taagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataaggtctacagtggacaaaa 192  Q
    ||||||| |||||||||||||||||   ||||||||||||||| ||||||  ||||| ||||||| |||||| ||||||||||||||| ||||||| ||     
T  30673957 taagatacaatggaccttcatgatctaacaatcactttttgataaaaaaa--tcgaatggttaaaattaaaagaattaataaggtctatagtggaccaac 30674054  T
Q  193 attgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    |||| |||| | |||| ||||| ||||  ||||||| ||||    
T  30674055 attgcttgtatttcactttagacatttggagttaaaattaa 30674095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 38698141 - 38697985
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataagg 176  Q
    ||||||| |||| ||||| |||| ||||||||||||| |||   ||||||||||||||| ||||||||||||| | ||||| |||||| | ||||||||     
T  38698141 tattgattgtattccatatgatacaatggaccttcataatccaacaatcactttttgataaaaaaagatcgaatgattaaaattaaaagacttaataagt 38698042  T
Q  177 tctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    | ||  |||||| || | |||||||||  ||| ||||| ||||| ||||||||||||    
T  38698041 tgtatggtggaccaacactgtttgtgttccactttagacatttaaagttaaagttaa 38697985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 32553753 - 32553919
Alignment:
Q  80 tgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataaggtct 179  Q
    ||||||||||||||||| ||||||| || |||||||||   |  || ||||||   ||||||| ||||||||||||||||||||| |||||||||||| |    
T  32553753 tgatggtataccataagctataatgtac-ttcatgatccaaccgtctctttttttataaaaaaaatcgaacggttaaatttaaaagaattaataaggttt 32553851  T
Q  180 acagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaaaagctaatgatcttt 248  Q
    |  |||||| |  ||| |||||||  ||| ||||| ||||| |||||||||||| ||| ||||| ||||    
T  32553852 atggtggaccaccatt-tttgtgttccactttagacatttaaagttaaagttaacagcgaatgaccttt 32553919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 32552564 - 32552415
Alignment:
Q  80 tgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataaggtct 179  Q
    ||||||||||||||||| ||||||| || |||||||||   |  ||||||||| || ||||||  || |||||||||| |||||| |||||||||||| |    
T  32552564 tgatggtataccataagctataatgtac-ttcatgatccaaccgtcacttttttataaaaaaa--tcaaacggttaaaattaaaagaattaataaggttt 32552468  T
Q  180 acagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    |  |||||| || ||| |||||||  ||| ||||| ||||| ||||||||||||    
T  32552467 atggtggaccaacatt-tttgtgttccactttagacatttaaagttaaagttaa 32552415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 39173387 - 39173235
Alignment:
Q  80 tgatggtataccataagatataatggaccttcatgatcatccaatcactttttgat-taaaaaagatcgaacggttaaatttaaaataattaataaggtc 178  Q
    ||||||||||||||||| ||||||| | ||||||||||   |  ||||||||| ||  |||||||||| |||||||||| |||||| ||||||||||||     
T  39173387 tgatggtataccataagctataatgta-cttcatgatccagccgtcacttttttataaaaaaaagatcaaacggttaaaattaaaagaattaataaggtt 39173289  T
Q  179 tacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    ||  |||||| || ||| |||||||  ||  ||||| ||||| ||||||||||||    
T  39173288 tatggtggaccaacatt-tttgtgttccattttagacatttaaagttaaagttaa 39173235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 39174572 - 39174669
Alignment:
Q  80 tgatggtataccataagatataatggaccttcatgatcatccaatcactttttg-attaaaaaagatcgaacggttaaatttaaaataattaataaggt 177  Q
    ||||||||||||||||| ||||||| || |||||||||   |  || ||||||  || |||||||||||||||||||||||||||| ||||||||||||    
T  39174572 tgatggtataccataagctataatgtac-ttcatgatccaaccgtctctttttttataaaaaaagatcgaacggttaaatttaaaagaattaataaggt 39174669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 35799666 - 35799570
Alignment:
Q  136 taaaaaagatcgaacggttaaatttaaaataattaataaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    ||||||| ||||||||||||||||||||| |||||||||||| ||  |||||| |  ||| |||||||  ||| ||||| ||||| ||||||||||||    
T  35799666 taaaaaaaatcgaacggttaaatttaaaagaattaataaggtttatggtggaccaccatt-tttgtgttccactttagacatttaaagttaaagttaa 35799570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 35800828 - 35800976
Alignment:
Q  84 ggtataccataagatataatggaccttcatgatcatccaatcactttttgat-taaaaaagatcgaacggttaaatttaaaataattaataaggtctaca 182  Q
    ||||||||||||| ||||||| | ||||||||||   |  ||||||||| ||  |||||||||| |||||||||| |||||| |||| ||||||| ||      
T  35800828 ggtataccataagctataatgta-cttcatgatccagccgtcacttttttataaaaaaaagatcaaacggttaaaattaaaagaattgataaggtttatg 35800926  T
Q  183 gtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    |||||| || ||| |||||||  ||| ||||| ||||| ||||||||||||    
T  35800927 gtggaccaacatt-tttgtgttccactttagacatttaaagttaaagttaa 35800976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 11724569 - 11724724
Alignment:
Q  80 tgatggtataccataagatataatggaccttcatgatcatccaatcac---tttttgattaaaaaagatcgaacggttaaatttaaaataattaataagg 176  Q
    |||||| |||||||||||||  ||||| ||||||||||   || ||||   ||||| || |||| |||||||||||||||| |||||| |||||||||||    
T  11724569 tgatggcataccataagataagatgga-cttcatgatccaacattcactttttttttataaaaatagatcgaacggttaaaattaaaagaattaataagg 11724667  T
Q  177 tctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    | || ||||||| || |||||||||||  ||| ||||| ||||| ||||||| ||||    
T  11724668 tgtatagtggaccaacattgtttgtgttccactttagacatttaaagttaaaattaa 11724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 24757155 - 24757054
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataagg 176  Q
    ||||||||||||||| ||||||| ||||||||||| |||||   |||| ||||||||||  ||||||||| ||  |||||| |||||| |||||||||||    
T  24757155 tattgatggtataccgtaagatacaatggaccttcgtgatctaacaattactttttgat--aaaaagatcaaattgttaaaattaaaagaattaataagg 24757058  T
Q  177 tcta 180  Q
    ||||    
T  24757057 tcta 24757054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 5077715 - 5077755
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatc 117  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  5077715 tattgatggtataccataacatataatggacattcatgatc 5077755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 11797445 - 11797537
Alignment:
Q  148 aacggttaaatttaaaataattaataaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaaaagctaa 240  Q
    |||||||||| |||||| |  || |||||||||  ||||||||| |||||||||||  ||| ||||| ||||| |||||||||||| ||||||    
T  11797445 aacggttaaaattaaaagacatattaaggtctattgtggacaaacattgtttgtgttccactttagacatttaaagttaaagttaacagctaa 11797537  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 325087 - 325131
Alignment:
Q  137 aaaaaagatcgaacggttaaatttaaaataattaataaggtctac 181  Q
    |||||||||| |||||||||| |||| | ||||||||||||||||    
T  325087 aaaaaagatcaaacggttaaaattaacaaaattaataaggtctac 325131  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 28702844 - 28702740
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgat-taaaaaagatcgaacggttaaatttaaaataattaataag 175  Q
    ||||||||||||||| ||||||| ||| ||| ||||  |||   |||||||||||| ||  |||||| || ||| ||||||| |||||| ||||||||||    
T  28702844 tattgatggtataccgtaagatacaatagacgttcacaatctaacaatcactttttcataaaaaaaatattgaatggttaaaattaaaagaattaataag 28702745  T
Q  176 gtcta 180  Q
     ||||    
T  28702744 atcta 28702740  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 39057609 - 39057712
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgattaaaaaagatcgaacggttaaatttaaaataattaataagg 176  Q
    ||||||||||||||| ||||||| ||| ||  |||| ||||   |||||||||||| || |||||| || ||| ||||||| |||||| ||||||||||     
T  39057609 tattgatggtataccgtaagatacaatagatgttcacgatctaacaatcactttttcataaaaaaatattgaatggttaaaattaaaagaattaataaga 39057708  T
Q  177 tcta 180  Q
    ||||    
T  39057709 tcta 39057712  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 42871368 - 42871328
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatc 117  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  42871368 tattgatggtataccataacatataatggacattcatgatc 42871328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 23103913 - 23104005
Alignment:
Q  140 aaagatcgaacggttaaatttaaaataattaataaggtctacagtggacaaaaattgtttgtgtctcaccttagatatttacagttaaagttaa 233  Q
    ||||||| ||||||| || |||||| |||||||| | ||||  |||||| || ||||||||||| |||| ||||| ||||  ||||||||||||    
T  23103913 aaagatcaaacggtttaaattaaaa-aattaataggatctatggtggaccaacattgtttgtgtttcactttagacatttcaagttaaagttaa 23104005  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 35349949 - 35350053
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgat-taaaaaagatcgaacggttaaatttaaaataattaataag 175  Q
    ||||||||||||||| ||||||| ||| ||| ||||  |||   |||||||||||| ||  |||||| || ||| ||||||| |||||| ||||||||||    
T  35349949 tattgatggtataccgtaagatacaatagacgttcactatctaacaatcactttttcataaaaaaaatattgaatggttaaaattaaaagaattaataag 35350048  T
Q  176 gtcta 180  Q
     ||||    
T  35350049 atcta 35350053  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 10956995 - 10957099
Alignment:
Q  77 tattgatggtataccataagatataatggaccttcatgatcatccaatcactttttgat-taaaaaagatcgaacggttaaatttaaaataattaataag 175  Q
    ||||||||||||||| ||||||| ||| ||  |||| ||||   |||||||||||| ||  |||||| || ||| ||||||| |||||| ||||||||||    
T  10956995 tattgatggtataccgtaagatacaatagatgttcacgatctaacaatcactttttcataaaaaaaatattgaatggttaaaattaaaagaattaataag 10957094  T
Q  176 gtcta 180  Q
     ||||    
T  10957095 atcta 10957099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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