View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3555_low_13 (Length: 237)
Name: NF3555_low_13
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32813762 - 32813981
Alignment:
| Q |
1 |
caccttagttcggtcatcttaactgcggttggattcgcgaattcatgggcttaggcaagtcactctcaaccgctgccaggaatgtacttcgagtcttaag |
100 |
Q |
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| T |
32813762 |
caccttagttcggtcatcttaactgcggttggattcgcgaattcataggcct-ggcaagtcactctcaaccgctgccaggaatgtacttcaagtcttaag |
32813860 |
T |
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| Q |
101 |
gagagaagggaaactaaagggattatgctagcaggaaaatcatttttcaaaactgaccttgaacttttttctcgagaatgttgtcattccccattctcag |
200 |
Q |
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| T |
32813861 |
gagagaagggaaactaaagggattatgctagcaggaaaatcatttttcaaaactgaccttgaacttttttctcgagaatgttgtcattccccattctcag |
32813960 |
T |
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| Q |
201 |
cacgattccatgggcggccat |
221 |
Q |
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| T |
32813961 |
cacgattccatgggcggccat |
32813981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42162812 - 42163029
Alignment:
| Q |
1 |
caccttagttcggtcatcttaactgcggttggattcgcgaattcatgggcttaggcaagtcactctcaaccgctgccaggaatgtacttcgagtcttaag |
100 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||||| |||||||| || ||||||||||||| | | |||||||||| ||| |||||| | |
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| T |
42162812 |
caccttagtttggtcatcttaactgcggccggatttgcgaatttgtgggcttaagcgggtcactctcaaccaccgttaggaatgtacatcgggtcttatg |
42162911 |
T |
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| Q |
101 |
gagagaagggaaactaaagggattatgctagcag-gaaaatcatttttcaaaactgaccttgaacttttttctcgagaatgttgtcattccccattctca |
199 |
Q |
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| T |
42162912 |
cagtgaagggcaactacatgatttacgcttgcagaaaaaatcatttttcaaaacaaaacttaagctttgttatccaggatgttgtcattccccattctca |
42163011 |
T |
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| Q |
200 |
gcacgattccatgggcgg |
217 |
Q |
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| T |
42163012 |
gcatgattccctgggcgg |
42163029 |
T |
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