View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3555_low_2 (Length: 382)
Name: NF3555_low_2
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_low_2 |
 | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0133 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 13689 - 13343
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
13689 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgattgatgctgcttatgtgattgatgatatattggatgaatgttcaataacct |
13590 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
13589 |
taagagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaa |
13490 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
||| |||| ||||||| ||||||||| | || ||||| |||||| | | | |||| ||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
13489 |
gatcgatgatattgctgaagaaaggatgaagttcggattacaacaatttgcagtcacggaggagcgccaacgacgagatgatgaatggcgccaaactact |
13390 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaaga |
362 |
Q |
| |
|
||| ||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
13389 |
tctgctgtcaccgaaccgaaagtatatggaagagacaaagataaaga |
13343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 9341 - 9116
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9341 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
9242 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||| |||||||||||||| |||||||| | |
|
|
| T |
9241 |
taaaagcacatggtaacaacaagcggatcactcgtttccatcctatgaagattttggttcgtcgcaacattggaaagaggatgaaggagattgctaaaga |
9142 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaagga |
241 |
Q |
| |
|
||| || | ||||||| ||||||||| |
|
|
| T |
9141 |
gatcgacgatattgctgaagaaagga |
9116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 38321 - 37978
Alignment:
| Q |
19 |
aagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataaccttaa |
118 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38321 |
aagcaaataacaaacgatgccgtgaaagagtggctacagcaactcggtgattctgcttatgtacttgatgatatattggatgaatgttcaataaccttaa |
38222 |
T |
|
| Q |
119 |
aagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaagat |
218 |
Q |
| |
|
|| |||| || ||| ||||| | |||||| ||||||||||| |||||||||||||| |||| || ||||| |||||||||||||| |||||||||| ||| |
|
|
| T |
38221 |
aaccacacggagacgacaagtgcatcactagtttccatcctgtgaagattttggcttgtcgcaacattggaaagaggatgaaggaggttgctaaaaggat |
38122 |
T |
|
| Q |
219 |
tgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactacttct |
318 |
Q |
| |
|
||||| ||||||| ||||||||||| | ||||||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38121 |
tgatgatattgctgaagaaaggaacaaatttggatttcaacgagtgggagtcacggaggagcatcaacgaggagatgatgaatggcgccaaactatttct |
38022 |
T |
|
| Q |
319 |
tctgtcactgaaccgatactatatggaagagacaaagataaaga |
362 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
38021 |
actgtcaccgaaccgaaagtatatggaagagacaaagataaaga |
37978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 16658846 - 16658499
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||| || ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
16658846 |
aagaagcaaataacaaacgatcttgtgaggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16658747 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
|||||||||||| | ||||||| | |||||| |||| |||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
16658746 |
caaaagcacatggaggcaacaagtgcatcactagttttcatcctatgaagattttggctcgtcgtaacattggaaagaggatgaaggaggttgctaaaag |
16658647 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||||| ||||||| ||||||||| | | ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
16658646 |
gattgatgatattgctgaagaaaggatcaagtttggatttcaactggtgggagtcacagaggagcagcaacgaggagatgatgaatggcgccaaactatt |
16658547 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaagag |
363 |
Q |
| |
|
||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
16658546 |
tctactgtcaccgaaccgaaagtatatggaagagacaaagataaagag |
16658499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 16867329 - 16867676
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
||||||||||||||||| ||| |||||| | ||||| || ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
16867329 |
aagaagcaaataacaaacgatcctgtgaggaactggctgcaaaaactgggtgacgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16867428 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
|||||| ||||| | ||||||| | |||||| ||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||||| |
|
|
| T |
16867429 |
caaaagcgcatggaggcaacaagtgcatcactagtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaag |
16867528 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||||| ||||||| ||||||||| | | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16867529 |
gattgatgatattgctgaagaaaggatcaagtttggatttcaactagtgggagtcacagaggagcaccaacgaggagatgatgaatggcgccaaactatt |
16867628 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaagag |
363 |
Q |
| |
|
||| ||| || ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
16867629 |
tctattgttaccgaaccgaaagtatatggaagagacaaagataaagag |
16867676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 16781939 - 16781714
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781939 |
aagaagcaaataacaaatgatgctgtgaaagagtggttacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
16781840 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||| | |
|
|
| T |
16781839 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggagattgctaaaga |
16781740 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaagga |
241 |
Q |
| |
|
||| |||| ||||||| ||||||||| |
|
|
| T |
16781739 |
gatcgatgatattgctgaagaaagga |
16781714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 16988285 - 16987948
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | ||||| ||| ||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
16988285 |
aagaagcaaataacaagcaatgttgtgaaacaatggctgcagaaactgtctgatgctgcttatgtacttgatgatatattggatgaatgctcaataacct |
16988186 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||| ||||||||||||||| ||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
16988185 |
caaaagcacatggagacaaca---------ctagtttccatcctatgaagattttggctcatcgcaacattgggaagaggatgaagaaagttgctaaaaa |
16988095 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||||| ||||||| ||||||||| | | ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
16988094 |
gattgatgatattgctgaagaaaggatcaagtttggatttcaacaagtgggagtcatggaggagcatcaacgaggagatgatgaatggcgccaaactatt |
16987995 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaaga |
362 |
Q |
| |
|
||| || |||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
16987994 |
tctactatcacagaaccgaaagtatatggaagagacaaagataaaga |
16987948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 16838518 - 16838171
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
|||||||| ||||||| ||| ||||||| | ||||| ||| || || |||||||||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
16838518 |
aagaagcagataacaagcaatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16838419 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
||||||||||| | ||||||| | ||||| ||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||||| |
|
|
| T |
16838418 |
caaaagcacatgaaggcaacaagtgcatcacccgtttccatccaatgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaag |
16838319 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
16838318 |
gattgatgatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggatcctaactact |
16838219 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaagag |
363 |
Q |
| |
|
||| ||||||| ||||| | | |||||||||||||||||||||||||| |
|
|
| T |
16838218 |
tctgctgtcaccgaaccaaaagtatatggaagagacaaagataaagag |
16838171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 17070343 - 17069996
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
|||||||| ||||||| |||| ||||||| | ||||| ||| || || |||||||||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
17070343 |
aagaagcagataacaagcgatgttgtgaaacaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
17070244 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
||||||||||| | ||||||| | ||||| ||||||||||| ||||||||||||||| ||| || ||||| |||||||||||||| |||||||||| |
|
|
| T |
17070243 |
caaaagcacatgaaggcaacaagtgcatcacccgtttccatccaatgaagattttggctcatcgcaacattggaaagaggatgaaggaggttgctaaaag |
17070144 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||| | ||||||||||||||||| ||| | ||||||||||| |||||| |||| ||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
17070143 |
gattgacgatattgctaaagaaaggatcgagtatggatttcaaccggtgggagtcacggaggagcaccaacgaggagatgatgaacagatccaaactatt |
17070044 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaagag |
363 |
Q |
| |
|
||| || |||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
17070043 |
tctgctatcaccgaaccgaaagtatatggaagagacaaagataaagag |
17069996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 16798006 - 16797660
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
|||||||| ||||||| |||| |||| || | ||||| ||| || || |||||||||||||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
16798006 |
aagaagcagataacaagcgatgttgtgcaaaaatggctgcagaaattgggtgatgctgcttatgtacttgatgatatattggatgaatgttcaataactt |
16797907 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
||||||||||| | ||||||| | ||||| ||||| ||||| |||| |||||||||||||| || ||||| |||||||||||||| |||||||||| |
|
|
| T |
16797906 |
caaaagcacatgaaggcaacaagtgcatcacccgttttcatccaatgaaaattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaag |
16797807 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||||| ||||||| |||||||||| | |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
16797806 |
gattgatgatattgctgaagaaaggaaaaagtttggatttcaatcagtgggagtcacggaggagcaccaacgaggagatgatgaatggatcctaactact |
16797707 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaaga |
362 |
Q |
| |
|
||| ||||||| ||||| | | ||||||||||||||||||||||||| |
|
|
| T |
16797706 |
tctgctgtcaccgaaccaaaagtatatggaagagacaaagataaaga |
16797660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 350
Target Start/End: Original strand, 18872531 - 18872839
Alignment:
| Q |
39 |
tgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataaccttaaaagcacatggcgacaacaag |
138 |
Q |
| |
|
||||||||| ||||| ||| | ||| ||||| ||| ||||| ||||||||||||||||| || ||| ||||||| | |||||||||||| ||||||||| |
|
|
| T |
18872531 |
tgtgaaagattggctgcagaagctgactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatcaaaagcacatggagacaacaag |
18872630 |
T |
|
| Q |
139 |
cggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaagattgatgctattgctaaagaaa |
238 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
18872631 |
tggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaa |
18872730 |
T |
|
| Q |
239 |
ggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactacttcttctgtcactgaaccgatact |
338 |
Q |
| |
|
||| | | |||||||| ||||| || | ||| ||||| | |||||||||||||||| |||||||||||||| |||| |||||||||||| | | |
|
|
| T |
18872731 |
ggatcaagtttggatt---acaagcggtagtcatggaggatcgccaacgaggagatgataaatggcgccaaactttttctgtcatcactgaaccgaaagt |
18872827 |
T |
|
| Q |
339 |
atatggaagaga |
350 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18872828 |
atatggaagaga |
18872839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 18793946 - 18794273
Alignment:
| Q |
17 |
agaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacctt |
116 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| ||| | || ||||| ||| ||||| ||||||||||||||||| || ||| ||||||| | |
|
|
| T |
18793946 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatc |
18794045 |
T |
|
| Q |
117 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaag |
216 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||| |||||| |||||||||||||||| | |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18794046 |
aaaagcacatggagacaacaagtggatcacccgtttacatcctaagaagattttggctcgtaggaatattggaaagaggatgaaggaggttgctaaaaag |
18794145 |
T |
|
| Q |
217 |
attgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactactt |
316 |
Q |
| |
|
||||||| ||||||| ||||||||| | | |||||||| |||| || | ||| ||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18794146 |
attgatgttattgctgaagaaaggatcaagtttggatt---gcaagcggtagtcatggaggatcgccaacgaggagatgatgaatggcgccaaactactt |
18794242 |
T |
|
| Q |
317 |
cttctgtcactgaaccgatactatatggaag |
347 |
Q |
| |
|
| ||||||||||||| | |||||||||| |
|
|
| T |
18794243 |
cagtcgtcactgaaccgaaagtatatggaag |
18794273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 91 - 350
Target Start/End: Original strand, 18805589 - 18805845
Alignment:
| Q |
91 |
atattggacgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattggga |
190 |
Q |
| |
|
|||||||| || ||| ||||||| | |||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
18805589 |
atattggatgattgtacaataacatcaaaagcacatggagacaacaagtggatcacccgtttccatcctaagaagattttggctcgtcgggatattggaa |
18805688 |
T |
|
| Q |
191 |
agaggatgaaggaagttgctaaaaagattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgagg |
290 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||||||| | | |||||||| |||| || | ||| ||||| | ||||||||| |
|
|
| T |
18805689 |
agaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaaggatcaagtttggatt---gcaagcggtagtcatggaggatcgccaacgagg |
18805785 |
T |
|
| Q |
291 |
agatgatgaatggcgccaaactacttcttctgtcactgaaccgatactatatggaagaga |
350 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||||||| | ||||||||||||| |
|
|
| T |
18805786 |
agatgataaatggcgccaaactaattcagtcatcactgaaccgaaagtatatggaagaga |
18805845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 350
Target Start/End: Original strand, 18870054 - 18870362
Alignment:
| Q |
39 |
tgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataaccttaaaagcacatggcgacaacaag |
138 |
Q |
| |
|
||||||||| ||||| ||| | ||| ||||| ||||||||| ||||||||||||||||| || ||| |||||| | |||||||||||| ||||||||| |
|
|
| T |
18870054 |
tgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgatgatatattggatgattgtacaataaaatcaaaagcacatggagacaacaag |
18870153 |
T |
|
| Q |
139 |
cggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaagattgatgctattgctaaagaaa |
238 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
18870154 |
tggatcaccagtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaagattgatgttattgctgaagaaa |
18870253 |
T |
|
| Q |
239 |
ggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactacttcttctgtcactgaaccgatact |
338 |
Q |
| |
|
||| | | || ||||| |||||||| | ||| ||||| | ||||||||||| ||||||| ||||||||||||||| ||||||||||| | | | |
|
|
| T |
18870254 |
ggatcaaattaggatt---acaagtggtagtcatggaggatcgccaacgaggagttgatgaaaatcgccaaactacttctgtcgtcactgaaccaaaagt |
18870350 |
T |
|
| Q |
339 |
atatggaagaga |
350 |
Q |
| |
|
||||||||||| |
|
|
| T |
18870351 |
ttatggaagaga |
18870362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 18587027 - 18587251
Alignment:
| Q |
17 |
agaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacctt |
116 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| ||| | ||| ||||| ||||||||| ||||| ||||||||||| || ||| |||||| | |
|
|
| T |
18587027 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatattggatgattgtacaataaaatc |
18587126 |
T |
|
| Q |
117 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaag |
216 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||||||||| || ||||||||||||| | ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18587127 |
aaaagcacatggagacaacaagtggatcacccgtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaag |
18587226 |
T |
|
| Q |
217 |
attgatgctattgctaaagaaagga |
241 |
Q |
| |
|
||||||| ||||||| ||||||||| |
|
|
| T |
18587227 |
attgatgttattgctgaagaaagga |
18587251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 66 - 347
Target Start/End: Complemental strand, 16788752 - 16788474
Alignment:
| Q |
66 |
tgatgctgcttatgtgcttgatgatatattggacgaatgttcaataaccttaaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaag |
165 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||| | ||||| ||||||| |||| |||| |
|
|
| T |
16788752 |
tgatgctgctcatgttcttgatgatttattggacgaatgttcaataacatcaaaagcacatggagacaacaagtgcatcacccgtttccttcctaagaag |
16788653 |
T |
|
| Q |
166 |
attttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaagattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgg |
265 |
Q |
| |
|
|||||||||| ||| | |||| ||||||||||||| ||||||||||||||||| | |||||||||||| |||| | | |||||| ||||||| |
|
|
| T |
16788652 |
attttggctcagcgtgacgttggaaagaggatgaaggcggttgctaaaaagattgacgttattgctaaagacaggatgaagtatggatt---gcaagtgg |
16788556 |
T |
|
| Q |
266 |
gactcacagaggagcaccaacgaggagatgatgaatggcgccaaactacttcttctgtcactgaaccgatactatatggaag |
347 |
Q |
| |
|
|| | ||||| |||| |||||||| | |||||| |||||||||||||||||| ||||| ||||| || |||||||||| |
|
|
| T |
16788555 |
gagtaacagaagagcgtcaacgaggtgctgatgagtggcgccaaactacttctgtcgtcaccgaacctgtagtatatggaag |
16788474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 16844398 - 16844370
Alignment:
| Q |
291 |
agatgatgaatggcgccaaactacttctt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16844398 |
agatgatgaatggcgccaaactacttctt |
16844370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 9984 - 9644
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacct |
115 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9984 |
aagaagcaaataacaaacgatgctgtcaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggatgaatgttcaataacct |
9885 |
T |
|
| Q |
116 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||| | |
|
|
| T |
9884 |
taaaagcacatggcgacaacaagcggatcactcgtttccatcctatgaagattttggctcgtcgcaacattggaaagaggatgaaggagattgctaaaga |
9785 |
T |
|
| Q |
216 |
gattgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactact |
315 |
Q |
| |
|
|||||||| ||||||| ||||||||| | || ||||| ||| ||||| ||| ||||||||||| || |||||| || ||||| |||||||| |
|
|
| T |
9784 |
gattgatgatattgctgaagaaaggatgaagttcggatt---acaggtgggggtca---tggagcaccaaccagaagatgaagagtggcggcaaactacc |
9691 |
T |
|
| Q |
316 |
tcttctgtcactgaaccgatactatatggaagagacaaagataaaga |
362 |
Q |
| |
|
|| | |||||||| | ||| ||| ||||||||||||||||||||| |
|
|
| T |
9690 |
tccttcatcactgaatccatagtatttggaagagacaaagataaaga |
9644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 38938681 - 38938905
Alignment:
| Q |
17 |
agaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacctt |
116 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| ||||| ||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38938681 |
agaagcaaattacaagccatgttgtgaaagactggctgcagaaattgcgtgatgttgcttatgtacttgatgatatattggatgaatgttcaataacctt |
38938780 |
T |
|
| Q |
117 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaag |
216 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||| |||||||||||| |
|
|
| T |
38938781 |
aaaagcacatggcgacaacaagtggatcactcgtttccatcctctgaagattttggctcgtcgcaacattggaaagaggatgaaggaggttgctaaaaag |
38938880 |
T |
|
| Q |
217 |
attgatgctattgctaaagaaagga |
241 |
Q |
| |
|
|| |||| ||||||| ||||||||| |
|
|
| T |
38938881 |
atcgatgatattgctgaagaaagga |
38938905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 7052586 - 7052930
Alignment:
| Q |
18 |
gaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacctta |
117 |
Q |
| |
|
||||||||| |||| ||||||| ||||| ||||| ||| | ||| |||||||||| |||| |||||||||||||||||||||||||||||||| | | |
|
|
| T |
7052586 |
gaagcaaattacaagccatgctgtaaaagattggctgcagaagctggctgatgctgctcatgttcttgatgatatattggacgaatgttcaataacatca |
7052685 |
T |
|
| Q |
118 |
aaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaaga |
217 |
Q |
| |
|
||| | ||| ||||||||| ||||||| |||||||||||| ||||||||||||||| ||| | ||||| ||||||||||| || ||||||||||||| |
|
|
| T |
7052686 |
aaaccctgtggagacaacaagtggatcacccgtttccatcctaagaagattttggctcggcgtgacattggaaagaggatgaaagaggttgctaaaaaga |
7052785 |
T |
|
| Q |
218 |
ttgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactacttc |
317 |
Q |
| |
|
|||||| ||||||| ||||||||| | | |||||||| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
7052786 |
ttgatgttattgctgaagaaaggatcaagtttggatt---acaagtgggagtcatagaggagcgtcagcgaggagatgatgaatggcgccaaactacttc |
7052882 |
T |
|
| Q |
318 |
ttctgtcactgaaccgatactatatggaagagacaaagataaagagaa |
365 |
Q |
| |
|
| |||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
7052883 |
tgtcatcactgaagttgtggtatatggaagagacaaagataaagagaa |
7052930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 10195 - 9864
Alignment:
| Q |
17 |
agaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacctt |
116 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| ||| | || ||||| ||| ||||| ||||||||||||||||| || ||| ||||||| | |
|
|
| T |
10195 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctaactgatgttgcctatgttcttgatgatatattggatgattgtacaataacatc |
10096 |
T |
|
| Q |
117 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaag |
216 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||| |||||| |||||||||||||||| | ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10095 |
aaaagcacatggagacaacaagtggatcacccgttttcatcctaagaagattttggctcgttggcatattggaaagaggatgaaggaggttgctaaaaag |
9996 |
T |
|
| Q |
217 |
attgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactactt |
316 |
Q |
| |
|
||||||| ||||||| ||||||||| | | |||||||| |||| || | ||| ||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9995 |
attgatgttattgctgaagaaaggatcaagtttggatt---gcaagcggtagtcatggaggatcgccaacgaggagatgatgaatggcgccaaactactt |
9899 |
T |
|
| Q |
317 |
cttctgtcactgaaccgatactatatggaagagac |
351 |
Q |
| |
|
| ||||||||||||| | |||||||||||||| |
|
|
| T |
9898 |
cagtcgtcactgaaccgaaagtatatggaagagac |
9864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 5515 - 5185
Alignment:
| Q |
17 |
agaagcaaataacaaatgatgctgtgaaagagtggctacagcaactgcgtgatgctgcttatgtgcttgatgatatattggacgaatgttcaataacctt |
116 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||| ||| | ||| ||||| ||||||||| ||||| ||||||||||| || ||| |||||| | |
|
|
| T |
5515 |
agaagcaaataacaagccgtgttgtgaaagattggctgcagaagctgactgatgttgcttatgttcttgacgatatattggatgattgtacaataaaatc |
5416 |
T |
|
| Q |
117 |
aaaagcacatggcgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtcgtaatattgggaagaggatgaaggaagttgctaaaaag |
216 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||||||||||| || ||||||||||||| | ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
5415 |
aaaagcacatggagacaacaagtggatcacccgtttccatcctaagatgattttggctcgtagggatattggaaagaggatgaaggaggttgctaaaaag |
5316 |
T |
|
| Q |
217 |
attgatgctattgctaaagaaaggaacgattttggatttcaacaagtgggactcacagaggagcaccaacgaggagatgatgaatggcgccaaactactt |
316 |
Q |
| |
|
||||||| ||||||| ||||||||| | | |||||||| ||||| || | ||| || || | |||||||||||||||| |||||||||||||| || |
|
|
| T |
5315 |
attgatgttattgctgaagaaaggatcaagtttggatt---acaagcggtagtcatggaagatcgccaacgaggagatgataaatggcgccaaacttttt |
5219 |
T |
|
| Q |
317 |
cttctgtcactgaaccgatactatatggaagaga |
350 |
Q |
| |
|
|| ||||||||||||| | ||||||||||||| |
|
|
| T |
5218 |
ctgtcgtcactgaaccgaaagtatatggaagaga |
5185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 13378868 - 13378711
Alignment:
| Q |
82 |
cttgatgatatattggacgaatgttcaataaccttaaaagcacatgg---cgacaacaagcggatcactcgtttccatcctttgaagattttggctcgtc |
178 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||| | ||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
13378868 |
cttgatgatatattagacgaatattcgataagatccaaagcacatggagacgacgacaagtggatcactcgtttccatcctaagaagattttggctcgcc |
13378769 |
T |
|
| Q |
179 |
gtaatattgggaagaggatgaaggaagttgctaaaaagattgatgctattgctaaaga |
236 |
Q |
| |
|
| |||||| ||||||||||| || ||||||||||||||||||| ||||||| |||| |
|
|
| T |
13378768 |
gaggtattggaaagaggatgaaagaggttgctaaaaagattgatgttattgctgaaga |
13378711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 20155377 - 20155348
Alignment:
| Q |
16 |
aagaagcaaataacaaatgatgctgtgaaa |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20155377 |
aagaagcaaataacaaatgatgctgtgaaa |
20155348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University