View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3555_low_5 (Length: 318)
Name: NF3555_low_5
Description: NF3555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3555_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 21183105 - 21182815
Alignment:
| Q |
11 |
gaagaaaaagtgcttatcaactttctgtggaacgttagcaggaaactgggcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtg |
110 |
Q |
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| T |
21183105 |
gaagaaaaagtgtttatcaactttctgtggaacgttagccggaaactggggactggcaaggctgcggagtttcttggaaaactttgttgcaaaagaagtg |
21183006 |
T |
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| Q |
111 |
tcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccgg |
210 |
Q |
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| T |
21183005 |
tcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccgg |
21182906 |
T |
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| Q |
211 |
caacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggtctt |
301 |
Q |
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| T |
21182905 |
caacagtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggtctt |
21182815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 21205579 - 21205292
Alignment:
| Q |
11 |
gaagaaaaagtgcttatcaactttctgtggaacgttagcaggaaactgggcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtg |
110 |
Q |
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| T |
21205579 |
gaagaaaaagtgtttatcgattttcttgggaacattagctggaaactgtgcacttgctaggctacggagtttgttggagaactttgttgcaaaggatgta |
21205480 |
T |
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| Q |
111 |
tcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccgg |
210 |
Q |
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| T |
21205479 |
tcattaaatgcaggaagaataggtttgaatagaggatgcttttttagtgaagaagctgaatgatgagtatttggtgggatttcatattcaaggatagcag |
21205380 |
T |
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| Q |
211 |
caacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgagacttggt |
298 |
Q |
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| T |
21205379 |
cgaccgttgtgttgtcaaaaggtccagggccagcggcatagggtctagcagtcattaagaatgccgcattgggatagtgtgacttggt |
21205292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 21853806 - 21853561
Alignment:
| Q |
11 |
gaagaaaaagtgcttatcaactttctgtggaacgttagcaggaaactgggcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtg |
110 |
Q |
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| T |
21853806 |
gaagaaaaagtgcttatcaactttttgaggaacattagctggaaactgagcatttgctaagctatgaagtttgttagtgaaatttgttgcaaatgaagtg |
21853707 |
T |
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| Q |
111 |
tcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccgg |
210 |
Q |
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| T |
21853706 |
tcattaagttgaggtagaataggtttcaaaagtggaagttttttgagtgaagaatttgaatggtgagtattaaatggaatttcatattctatgattccag |
21853607 |
T |
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| Q |
211 |
caacggtggtgttgtcaaaagttccctggccggtagcatatggtct |
256 |
Q |
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| T |
21853606 |
caactgttgagttgtcaaaagtgccttggcctgtagcatatggtct |
21853561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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