View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_high_1 (Length: 853)
Name: NF3556_high_1
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 760; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 760; E-Value: 0
Query Start/End: Original strand, 20 - 841
Target Start/End: Complemental strand, 37702535 - 37701714
Alignment:
| Q |
20 |
atgcactgctgggttcccaaatcccacaaacccaacaaaccctctcttctacttctccatggcatgggcgctaacgcaatgtggcaatggaacgaattca |
119 |
Q |
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| T |
37702535 |
atgcactgctgggttcccaaatcccacaaacccaacaaaccctctcttctacttctccatggcatgggcgctaacgcaatgtggcaatggaacgaattca |
37702436 |
T |
|
| Q |
120 |
tttcccaactcactcgtcgtttcaacctctacgttcccgatcttctcttcttcggtgaggctcacacctctaaacctaatcgaaccgaatcttttcaagc |
219 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37702435 |
tctcccaactcactcgtcgtttcaacatctacgttcccgatcttctcttcttcggtgaggctcacacctctaaacctaatcgaaccgaatcttttcaagc |
37702336 |
T |
|
| Q |
220 |
tcagtgtgttgctgctctcatggaagcgcattgtgtgaggagaatgattgttgttggtgttagttatggtggttttgttggcggagagagtggataaagt |
319 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37702335 |
tcagtgtgttgctgctctcatggaagcgcattgtgcgaggagaatgaatgttgttggtgttagttatggtggttttgttggcggagagagtggagaaagt |
37702236 |
T |
|
| Q |
320 |
tgcgnnnnnnngtgctggggtttgtttggaagataaggatatggagaatggattgtttgtggttaagaatattgatgaagctgctatgattttgattcct |
419 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37702235 |
tgcgttttgttgtgctggggtttgtttggaagataaggatatggagaatggattgtttgtggttaagaatattgatgaagctgctatgattttgattcct |
37702136 |
T |
|
| Q |
420 |
cagactccagagaagatgaagcagcttgttaagcttacttttgttaagcctttcaaagttatgccggcttgttttctcactgatttcattgatgtgagtg |
519 |
Q |
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| T |
37702135 |
cagactccagagaagatgaagcagcttgttaagcttacttttgttaagcctttcaaagttatgccggcttgttttctcactgatttcattgatgtgagtg |
37702036 |
T |
|
| Q |
520 |
nnnnnnnctcattataaagcttgattgatttcagtttaattttaattgctctaattgggatcataaactcttgttattattaggggatatagtatatgga |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37702035 |
tttttttctcattataaagcttgattgatttcagtttaattttaattgctctaattgggatcataaactcttgttattattaggggatatagtatatgga |
37701936 |
T |
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| Q |
620 |
gtaatgttgtttacttaagaaattccacatgattggtcagaattttgatgatttattactggtttaagttgaagtttattacactagataatgaatgaat |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701935 |
gtaatgttgtttacttaagaaattccacatgattggtcagaattttgatgatttattactggtttaagttgaagtttattacactagataatgaatgaat |
37701836 |
T |
|
| Q |
720 |
ttggattttgttgagaaatagtattattagttgtaatagttagttacaataattagttacatggttacttaagttagactaagggtctgtttgaattggt |
819 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701835 |
ttggattttgttgagaaatagtattattagttgtaatagttagttacaataattagttacatggttacttaagttagactaagggtctgtttgaattggt |
37701736 |
T |
|
| Q |
820 |
ttattgttgttctatatgtctc |
841 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
37701735 |
ttattgttgttctatatgtctc |
37701714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 781
Target Start/End: Original strand, 10223490 - 10223519
Alignment:
| Q |
752 |
gtaatagttagttacaataattagttacat |
781 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10223490 |
gtaatagttagttacaataattagttacat |
10223519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 151 - 300
Target Start/End: Complemental strand, 16511633 - 16511484
Alignment:
| Q |
151 |
cgttcccgatcttctcttcttcggtgaggctcacacctctaaacctaatcgaaccgaatcttttcaagctcagtgtgttgctgctctcatggaagcgcat |
250 |
Q |
| |
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|||||| ||||||||||||||||| || |||||||| || |||| |||| | | | ||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
16511633 |
cgttcctgatcttctcttcttcggcgaatctcacaccactttacctgttcgatctgtagcttttcaagctcagtgtgttgctgctctcatgggagcacat |
16511534 |
T |
|
| Q |
251 |
tgtgtgaggagaatgattgttgttggtgttagttatggtggttttgttgg |
300 |
Q |
| |
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||||||| || || |||||||||||||||||||||||| |||||||| |
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| T |
16511533 |
ggtgtgagaagtttgtatgttgttggtgttagttatggtggctttgttgg |
16511484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 739 - 777
Target Start/End: Complemental strand, 14201342 - 14201304
Alignment:
| Q |
739 |
agtattattagttgtaatagttagttacaataattagtt |
777 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
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| T |
14201342 |
agtattattagatgtaatagttagttacaataattagtt |
14201304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 780
Target Start/End: Original strand, 29051289 - 29051325
Alignment:
| Q |
744 |
tattagttgtaatagttagttacaataattagttaca |
780 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
29051289 |
tattagatgtaatagttagttacaataattagttaca |
29051325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 752 - 797
Target Start/End: Complemental strand, 486634 - 486588
Alignment:
| Q |
752 |
gtaatagttagttacaataattagttaca-tggttacttaagttaga |
797 |
Q |
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||||||||||||||||||||| ||||||| |||||| |||||||||| |
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| T |
486634 |
gtaatagttagttacaataatcagttacactggttagttaagttaga |
486588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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