View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_high_13 (Length: 309)
Name: NF3556_high_13
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 36499101 - 36498815
Alignment:
| Q |
4 |
ttatataaaaaccatgtaatacaatgatgaacaagtcaataaagttgggaatttaggattgtattttggataccattttagtgtttataggagttgaagg |
103 |
Q |
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| T |
36499101 |
ttatataaaaaccatgtaatacaatgatgaacaaatcaataaagttgggaatttaggattgtattttggataccattttggtgtttataggagttgaagg |
36499002 |
T |
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| Q |
104 |
tgacaaatctataattcgtgaatgaaccataaattgtgggaaggaaaatattggcaaacaccatagcaataaagttgtattgtaatttttaaacttattt |
203 |
Q |
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| T |
36499001 |
tgacaaatctataattcgtgaatgaaccataaattgtgggaaggaaaatattggcaaacaccatagcaataaagttgtattgtaatttttaaacttattt |
36498902 |
T |
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| Q |
204 |
cgaaacttaagtgaacctttataaaactctactggcgagtataaatgtatgtcaacattgttggtagaggcggcaaaagtacgttat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36498901 |
cgaaacttaagtgaacctttataaaactctactggcgagtataaatgtatgtcaacattgttggtagaggcggcaaaagtactttat |
36498815 |
T |
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