View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3556_high_2 (Length: 685)

Name: NF3556_high_2
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3556_high_2
NF3556_high_2
[»] chr7 (7 HSPs)
chr7 (202-665)||(25126232-25126714)
chr7 (12-179)||(25127852-25128019)
chr7 (202-349)||(7015599-7015746)
chr7 (202-349)||(7030957-7031104)
chr7 (202-349)||(7064585-7064732)
chr7 (209-316)||(7060143-7060250)
chr7 (134-174)||(38123796-38123836)
[»] scaffold1302 (1 HSPs)
scaffold1302 (202-316)||(854-968)
[»] chr5 (2 HSPs)
chr5 (130-174)||(15368136-15368180)
chr5 (130-174)||(37121478-37121522)
[»] chr3 (3 HSPs)
chr3 (130-174)||(52925759-52925803)
chr3 (130-174)||(25129670-25129714)
chr3 (133-169)||(35253557-35253593)
[»] chr8 (2 HSPs)
chr8 (130-174)||(4950378-4950422)
chr8 (130-174)||(41614737-41614781)
[»] chr6 (2 HSPs)
chr6 (134-170)||(19601714-19601750)
chr6 (130-174)||(29240600-29240644)
[»] chr2 (1 HSPs)
chr2 (130-174)||(7629755-7629799)
[»] chr1 (1 HSPs)
chr1 (130-174)||(20721063-20721107)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 202 - 665
Target Start/End: Complemental strand, 25126714 - 25126232
Alignment:
Q  202 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25126714 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattaaggaggcaacgaaagtgagcttcaattcacgaaatatattatccaaaatg 25126615  T
Q  302 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtgtcaaagggg 401  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25126614 caacagtcttgagcagtgtcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtttcaaagggg 25126515  T
Q  402 ttctgttctacgccaacctcattttgaatggat--------------------aagtggcatttgtttcattcagagtggctgcttttattcgttttatc 481  Q
    |||||||||||||||||||||||||||||||||                    ||| |||||| |||||||||||||||||||||||||||| |||||||    
T  25126514 ttctgttctacgccaacctcattttgaatggatatagaactagaaatctgaagaagaggcattcgtttcattcagagtggctgcttttattcattttatc 25126415  T
Q  482 tgaatcttaactacagttatttatgactgatgatggtagtcttgctattattgattccatactggtttggcatttaatttacattttgctattgatgata 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  25126414 tgaatcttaactacagttatttatgactgatgatggtagtcttgctattattgattgcatactggtttggcatttaatttacatttttctattgatgata 25126315  T
Q  582 ttattgattgcaattgcgatcacatattggttcgtatagtttttcattgcttactggtttttgtagtggtttgcatactagttt 665  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25126314 ttattgattgcaattgcgatcgcatattggttcgtatagtttttcattgcttactgg-tttcgtagtggtttgcatactagttt 25126232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 25128019 - 25127852
Alignment:
Q  12 tcatcacaaaggtaacaactcactcccattatttcttttttaatgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactc 111  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25128019 tcatcacaaaggtaacaactcactcccattattttttttttactgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactc 25127920  T
Q  112 atcaatgaatagtgattctgtatgtttggttccatttttggaggcgtcaaaattgattctagaaattg 179  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25127919 atcaatgaatagtgattctgtatgtgtggttccatttttggaggcgtcaaaattgattctagaaattg 25127852  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 7015746 - 7015599
Alignment:
Q  202 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 301  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7015746 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7015647  T
Q  302 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 349  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7015646 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7015599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 7031104 - 7030957
Alignment:
Q  202 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 301  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7031104 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7031005  T
Q  302 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 349  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7031004 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7030957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 7064732 - 7064585
Alignment:
Q  202 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 301  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7064732 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7064633  T
Q  302 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 349  Q
    ||||  |||||||||   |||  || |||| |||||||||||||||||    
T  7064632 caactctcttgcgcaacgtcaccatctacacaaatacctcttcaaatc 7064585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 7060250 - 7060143
Alignment:
Q  209 aatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatgcaacagt 308  Q
    ||||| |||||| ||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||||||  |    
T  7060250 aatgcatttcattacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatgcaactct 7060151  T
Q  309 cttgcgca 316  Q
    ||||||||    
T  7060150 cttgcgca 7060143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 38123836 - 38123796
Alignment:
Q  134 tgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctaga 38123796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1302 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1302
Description:

Target: scaffold1302; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 968 - 854
Alignment:
Q  202 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 301  Q
    |||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  968 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 869  T
Q  302 caacagtcttgcgca 316  Q
    ||||  |||||||||    
T  868 caactctcttgcgca 854  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 15368136 - 15368180
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctaga 15368180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 37121478 - 37121522
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||    
T  37121478 tgtatgtttggttccatttgtagaggagccaaaattgattctaga 37121522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 52925803 - 52925759
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||    
T  52925803 tgtatgttcggttccacttttggaggagtcaaaattgattctaga 52925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 25129714 - 25129670
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    ||||||||||||| || |||| |||| ||||||||||||||||||    
T  25129714 tgtatgtttggtttcaattttcgaggggtcaaaattgattctaga 25129670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 35253593 - 35253557
Alignment:
Q  133 atgtttggttccatttttggaggcgtcaaaattgatt 169  Q
    ||||||||||||||||||||||| | |||||||||||    
T  35253593 atgtttggttccatttttggaggtgccaaaattgatt 35253557  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 4950378 - 4950422
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  4950378 tgtatgtttggttccaattttggaggtgctaaaattgattctaga 4950422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 41614737 - 41614781
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    ||||||||||||||||||| || ||| | ||||||||||||||||    
T  41614737 tgtatgtttggttccatttgtgtaggagccaaaattgattctaga 41614781  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 19601714 - 19601750
Alignment:
Q  134 tgtttggttccatttttggaggcgtcaaaattgattc 170  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  19601714 tgtttggttccacttttggaggagtcaaaattgattc 19601750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 29240644 - 29240600
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    |||||||||||||||| |||||| ||  |||||||||||||||||    
T  29240644 tgtatgtttggttccacttttgggggaatcaaaattgattctaga 29240600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 7629755 - 7629799
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||    
T  7629755 tgtatgtttggttccacttttggaggagccaagattgattctaga 7629799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 20721107 - 20721063
Alignment:
Q  130 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 174  Q
    ||||||||| |||||| |||||||||  |||||||||||||||||    
T  20721107 tgtatgttttgttccacttttggaggaatcaaaattgattctaga 20721063  T

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