View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_high_3 (Length: 617)
Name: NF3556_high_3
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 569; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 8 - 600
Target Start/End: Complemental strand, 31951064 - 31950472
Alignment:
| Q |
8 |
gacgtaggaccatgtgcagcttggtatgataaccgagacaatatgcttctgtaggggtcactttctcgtttctccttcaaataagcgatacatctttcaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31951064 |
gacgtaggaccatgtgcagcttggtatgataaccgagacaatatgcttctgtaggggtcactttctcgtttctccttcaaatatgcgatacatctttcaa |
31950965 |
T |
|
| Q |
108 |
cctcggctttcacttcaaaatataattcttgagacttcttcttgtccttaagttcctgtttccttcctgtcaaacaatagctcaaattttaccgtcacat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950964 |
cctcggctttcacttcaaaatataattcttgagacttcttcttgtccttaagttcctgtttccttcctgtcaaacaatagctcaaattttaccgtcacat |
31950865 |
T |
|
| Q |
208 |
ttcacggctatttcatgttgagaaatatgcattggacataccttctgtttcgattggttttccaaaataatagtagaaccggcccggaactttgggcaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950864 |
ttcacggctatttcatgttgagaaatatgcattggacataccttctgtttcaattggttttccaaaataatagtagaaccggcccggaactttgggcaaa |
31950765 |
T |
|
| Q |
308 |
attccaggcagatacacttgttgatttgccaactcaccgtcaacatcagccctagtttcaaaatgtatagcttatgtttagtatgactcaacaaaaatga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950764 |
attccaggcagatacacttgttgatttgccacctcaccgtcaacatcagccctagtttcaaaatgtatagcttatgtttagtatgactcaacaaaaatga |
31950665 |
T |
|
| Q |
408 |
tggaaaagaaggaaaaatattcaaatacttatgtttagtacgaatcaacacaagcaaatttagatacctcaactgtggaacctcatttgtaaggctttct |
507 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31950664 |
tggaaaagaaggaaaaaaattcaaatacttatgtttagtacgaatcaacacaagcaaatttagatacctcaactgtggaacctcatttgtaaggctttct |
31950565 |
T |
|
| Q |
508 |
atttcagacctaaagtaaggaatcttcaccaagtcatcatagtcaatcacaacctgaaaggaacgatgcgatatggtgttatgatattcaaat |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31950564 |
atttcagacctaaagtaaggaatcttcaccaagtcatcataatcaatcacaacctgaaaggaacgatgcgatatggtgttgtgatattcaaat |
31950472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 31965339 - 31964976
Alignment:
| Q |
13 |
aggaccatgtgcagcttggtatgataaccgagacaatatgcttctgtaggggtcactttctcgtttctccttcaaataagcgatacatctttcaacctcg |
112 |
Q |
| |
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||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31965339 |
aggaccatgtgtagcttggtataataaccgagacagtatacttctgtaggggtcactttctcgtttctccttcaaataagcgatacatctttcaacctca |
31965240 |
T |
|
| Q |
113 |
gctttcacttcaaaatataattcttgagacttcttcttgtccttaagttcctgtttccttcctgtcaaacaatagctcaaattttaccgtcacatttcac |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||| |
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| T |
31965239 |
gctttcacttcaaaatataattcttgagacttctccctatccttaagttcccttttccttcctgtcaaacaatatctcaaattttaccctcagatttcat |
31965140 |
T |
|
| Q |
213 |
ggctatttcatgttgagaaatatgcattggacataccttctgtttcgattggttttccaaaataatagtagaaccggcccggaactttgggcaaaattcc |
312 |
Q |
| |
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|||||||||| |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
31965139 |
ggctatttcaagttgaggaatatgcattggtcataccttccgtttcaattggttttccaaaataatagtagagccgccccggaactttaggcaaaattcc |
31965040 |
T |
|
| Q |
313 |
aggcagatacacttgttgatttgccaactcaccgtcaacatcagccctagtttcaaaatgtata |
376 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |
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| T |
31965039 |
aggcaaatacacttgttgatttgccacctcaccgtcaacaccagccctagtttcacaatgtata |
31964976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 31977085 - 31976915
Alignment:
| Q |
16 |
accatgtgcagcttggtatgataaccgagacaatatgcttctgtaggggtcactttctcgtttctccttcaaataagcgatacatctttcaacctcggct |
115 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||| |||||||| || || |||||||||||||| || |||||||| |||||||| |||||||| | | |
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| T |
31977085 |
accatgtgtagcttggtagaataaccgagacactatacttctgtaaggatcgctttctcgtttctcttttaaataagcaatacatctctcaacctcagat |
31976986 |
T |
|
| Q |
116 |
ttcacttcaaaatataattcttgagacttcttcttgtccttaagttcctgtttccttcctgtcaaacaata |
186 |
Q |
| |
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| |||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
31976985 |
tgcacttcaagatataattcttgagagttctctctgtctttaagttcctgtttccttcctgttaaacaata |
31976915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 31976829 - 31976725
Alignment:
| Q |
241 |
ggacataccttctgtttcgattggttttccaaaataatagtagaaccggcccggaactttgggcaaaattccaggcagatacacttgttgatttgccaac |
340 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||||||| | |
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| T |
31976829 |
ggacatacctgctgtttcaattggttttccaaaataatagtagaaccggcctggaactttaggcaaaattccaggcatatgcacttgttgatttgccacc |
31976730 |
T |
|
| Q |
341 |
tcacc |
345 |
Q |
| |
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||||| |
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| T |
31976729 |
tcacc |
31976725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 443 - 566
Target Start/End: Complemental strand, 31976504 - 31976381
Alignment:
| Q |
443 |
tagtacgaatcaacacaagcaaatttagatacctcaactgtggaacctcatttgtaaggctttctatttcagacctaaagtaaggaatcttcaccaagtc |
542 |
Q |
| |
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||||| ||||||||| ||| |||||||||||||||||||| | |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
31976504 |
tagtatgaatcaacaaaagaaaatttagatacctcaactgcatagcctcgtttgtaagtttttctatttcagacttaaagtaaggaatcttcaccaagtc |
31976405 |
T |
|
| Q |
543 |
atcatagtcaatcacaacctgaaa |
566 |
Q |
| |
|
|||||| ||||||||||||||||| |
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|
| T |
31976404 |
atcataatcaatcacaacctgaaa |
31976381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 439 - 566
Target Start/End: Complemental strand, 31964897 - 31964769
Alignment:
| Q |
439 |
tgtttagtacgaatcaacacaa-gcaaatttagatacctcaactgtggaacctcatttgtaaggctttctatttcagacctaaagtaaggaatcttcacc |
537 |
Q |
| |
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||||||||| ||| ||||| || ||||||||| |||||||||||| | |||||||||||||||||||||||||||| || || ||||||||||||||| |
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|
| T |
31964897 |
tgtttagtatgaaacaacaaaaagcaaatttacatacctcaactgcacagcctcatttgtaaggctttctatttcagatctgaaataaggaatcttcacc |
31964798 |
T |
|
| Q |
538 |
aagtcatcatagtcaatcacaacctgaaa |
566 |
Q |
| |
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||||||||||| ||||||||||||||||| |
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|
| T |
31964797 |
aagtcatcataatcaatcacaacctgaaa |
31964769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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