View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_high_5 (Length: 529)
Name: NF3556_high_5
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 12 - 514
Target Start/End: Complemental strand, 42006208 - 42005706
Alignment:
| Q |
12 |
atcatcatccaagctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtcc |
111 |
Q |
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| T |
42006208 |
atcatcatccaagctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtcc |
42006109 |
T |
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| Q |
112 |
acacactcccacataccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccag |
211 |
Q |
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| T |
42006108 |
acacactcccacataccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccag |
42006009 |
T |
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| Q |
212 |
ttttgttaatcttggagcctatggtgattctccattttccttcagaagttagccaagcagttgttgggtcgcgaaagtcctttggaagaatgcctggtgg |
311 |
Q |
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| T |
42006008 |
ttttgttaatcttggagcctatggtgattctccattttccttcagaagtgagccaagcagttgttgggtcgcgaaagtcctttggaagaatgcctggtgg |
42005909 |
T |
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| Q |
312 |
agggacgagaaccgggttggcagggtatttgatccaatccacaaggagagggtcattgagatcagcagggtatgcaagattttggacttgcactgtttca |
411 |
Q |
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| T |
42005908 |
agggacgagaaccgggttggcagggtatttgatccaatccacaaggagagggtcattgagatcagcagggtatgcaagattttggacttgcactgtttca |
42005809 |
T |
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| Q |
412 |
ttggttgaaccggtatataacatgatgacttgaccgtcaggtaagatggtagcagagcctgtccaaacaccgttactatcgtaccattgatcggccacca |
511 |
Q |
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| T |
42005808 |
ttggttgaaccagtatataacatgatgacttgaccgtcaggtaagatggtagcagagcctgtccaaacaccgttactatcgtaccattgatcggccacca |
42005709 |
T |
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| Q |
512 |
ttg |
514 |
Q |
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| T |
42005708 |
ttg |
42005706 |
T |
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