View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3556_low_11 (Length: 384)

Name: NF3556_low_11
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3556_low_11
NF3556_low_11
[»] chr2 (3 HSPs)
chr2 (19-186)||(36499323-36499491)
chr2 (183-361)||(36499108-36499283)
chr2 (325-375)||(13149561-13149612)
[»] chr5 (1 HSPs)
chr5 (185-249)||(20454726-20454790)
[»] chr4 (1 HSPs)
chr4 (186-247)||(5371318-5371379)
[»] chr3 (2 HSPs)
chr3 (183-246)||(41703478-41703541)
chr3 (196-249)||(37105444-37105497)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 36499491 - 36499323
Alignment:
Q  19 gaaagatgttcaagatctccatgaacatttgtgttggtaaatggtaatccaacnnnnnnng-tttgttattgcaaggatttgagatggactctatttgtg 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||       | |||||||||||||||||||||||||||||| |||||||    
T  36499491 gaaagatgttcaagatctccatgaacatttgagttggtaaatggtaatccaacaaaaaaaggtttgttattgcaaggatttgagatggactccatttgtg 36499392  T
Q  118 taccactaaggagagaacgtcattgacatcgacgaatccaattgtgacgcctaagtcaattcaactatt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36499391 taccactaaggagagaacgtcattgacatcgacgaatccaattgtgacgcctaagtcaattcaactatt 36499323  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 183 - 361
Target Start/End: Complemental strand, 36499283 - 36499108
Alignment:
Q  183 tattgtcacatctcacacttgaattagttaatgtcatgtaacattatgtcacacaagtgcaatccgtccgagacatggtgacatgttctcaccnnnnnnn 282  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||           
T  36499283 tattgtcacatctcacacttgaattagtcaatatcatgtaacattatgtcacacaagtgcaatccgtccgagacagggtgacatgttctcaccttttttt 36499184  T
Q  283 nnnccttttccaattgttgttgaaggatttaacataatgataaacaacaaccaagtcttgtccgttaattgagatcggc 361  Q
        | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  36499183 t---cctttccaattgttgttgaaggatttaacataatgataaacaacaactaagtcttgtccgttaattgaggtcggc 36499108  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 13149612 - 13149561
Alignment:
Q  325 aacaacaaccaagtcttgtc-cgttaattgagatcggctatatgaatcaaat 375  Q
    ||||||||||||||||| || | ||||||||||||||||||||| |||||||    
T  13149612 aacaacaaccaagtcttatctcattaattgagatcggctatatggatcaaat 13149561  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 20454726 - 20454790
Alignment:
Q  185 ttgtcacatctcacacttgaattagttaatgtcatgtaacattatgtcacacaagtgcaatccgt 249  Q
    ||||||| | ||||||||||||| || |||| ||||| |||||||||||||||||| ||||||||    
T  20454726 ttgtcacgtgtcacacttgaattggtcaatggcatgtgacattatgtcacacaagtacaatccgt 20454790  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 5371318 - 5371379
Alignment:
Q  186 tgtcacatctcacacttgaattagttaatgtcatgtaacattatgtcacacaagtgcaatcc 247  Q
    |||||| | ||||||||||||| || |||| ||||| |||||||||| ||||||||||||||    
T  5371318 tgtcacgtgtcacacttgaattggtcaatggcatgtgacattatgtcgcacaagtgcaatcc 5371379  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 41703478 - 41703541
Alignment:
Q  183 tattgtcacatctcacacttgaattagttaatgtcatgtaacattatgtcacacaagtgcaatc 246  Q
    ||||||||||| ||  ||||||||| |  |||||||||| ||||||||||||| ||||||||||    
T  41703478 tattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 41703541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 37105497 - 37105444
Alignment:
Q  196 cacacttgaattagttaatgtcatgtaacattatgtcacacaagtgcaatccgt 249  Q
    |||||||||||| || |||||||||| ||||| | || ||||||||||||||||    
T  37105497 cacacttgaattggtcaatgtcatgtgacattttatcgcacaagtgcaatccgt 37105444  T

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