View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_low_13 (Length: 311)
Name: NF3556_low_13
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 39726692 - 39726975
Alignment:
| Q |
18 |
gataatgcaccgtcgcgggtagccccgcctgtctgattagaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaa |
117 |
Q |
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| T |
39726692 |
gataatgcaccgtcgcgggtagccctgcctgtctgattagaaatttctggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaa |
39726791 |
T |
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| Q |
118 |
tgacatcttataagcccatgtaacccaacagattataaccgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatg |
217 |
Q |
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| T |
39726792 |
tgacatcttataagcccatgtaacccaacagattataaccgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatg |
39726891 |
T |
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| Q |
218 |
ctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
301 |
Q |
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| T |
39726892 |
ctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
39726975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 301
Target Start/End: Original strand, 25671269 - 25671514
Alignment:
| Q |
56 |
agaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcc-catgtaacccaacagattata |
154 |
Q |
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| T |
25671269 |
agaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcaccaaaagccattctataagcaacaag-aacccaacagattaat |
25671367 |
T |
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| Q |
155 |
accgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaa |
254 |
Q |
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| T |
25671368 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
25671467 |
T |
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| Q |
255 |
ttccaacaagggtagctgatatcatttgccatgagttgtctcctttg |
301 |
Q |
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| T |
25671468 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttg |
25671514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 5625597 - 5625722
Alignment:
| Q |
176 |
gccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgata |
275 |
Q |
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| T |
5625597 |
gccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtagaccaactagggttgatgctg |
5625696 |
T |
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| Q |
276 |
tcatttgccatgagttgtctcctttg |
301 |
Q |
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| T |
5625697 |
tcatttgccatgagttgtctcctttg |
5625722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 13350166 - 13350230
Alignment:
| Q |
85 |
tttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacaga |
149 |
Q |
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|||||||||||| || |||||| | |||||||||||||| |||||||||| ||||||||||| |
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| T |
13350166 |
tttaccccaaaatggaaaaagtgtatcaccaaatgacattctataagcccaaaaaacccaacaga |
13350230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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