View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_low_16 (Length: 264)
Name: NF3556_low_16
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 34958404 - 34958209
Alignment:
| Q |
33 |
tggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaatgactctcaacctatca |
132 |
Q |
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| T |
34958404 |
tggatccctccaactgatcagaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcctgccaatgactctcaacctatca |
34958305 |
T |
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| Q |
133 |
tacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataat |
228 |
Q |
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| T |
34958304 |
tacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataat |
34958209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 3922225 - 3922452
Alignment:
| Q |
16 |
aatataaatgtagattttggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaa |
115 |
Q |
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||||||||||||| | |||||||||||||||| ||| || |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| |||| |
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| T |
3922225 |
aatataaatgtagctcttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctaccaa |
3922324 |
T |
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| Q |
116 |
tgactctcaacctatcatacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatc |
215 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
3922325 |
tgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatcataatttgttgtatc |
3922424 |
T |
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| Q |
216 |
agcaccagataatgttgcatctatgtga |
243 |
Q |
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| T |
3922425 |
agcaccagataatgttgcatctatgtga |
3922452 |
T |
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