View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3556_low_18 (Length: 253)
Name: NF3556_low_18
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 44728399 - 44728171
Alignment:
| Q |
11 |
cataggaagctgggttttaattccgttggctataattttagtaatgattttgagaatcacatgacataatgatatagacctaaaatccgaggttaggatc |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44728399 |
cataggaagctgggttttaattctgttggctataattttagtaatgattttgagaatcacatcacataatgatatagacctaaaatctgaggttaggatc |
44728300 |
T |
|
| Q |
111 |
ctttctactttctattattttcatttcctctactaagatcccctgttagcattatcaatattaaagacacaatttatgaaaccactatcatgtccaaaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44728299 |
ctttctactttctattattttcatttcctctactaagatcccccgttagcattatcaatattaaagacacaatttatgaaaccactatcatgtccaaaaa |
44728200 |
T |
|
| Q |
211 |
ccggtgattgaaaatgacgagaaaagatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44728199 |
ccggtgattgaaaatgacgagaaaagatt |
44728171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University