View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_low_19 (Length: 246)
Name: NF3556_low_19
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 44080417 - 44080206
Alignment:
| Q |
18 |
aaagaaatgagcagcacaccacgaatattttacacgtgagtgtaagtgtagtgtactagtctttcatgcttttgttggggtccttgtacttgaagaagtt |
117 |
Q |
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| T |
44080417 |
aaagaaatgagcagcacaccacgaatattttacacgtgagtgtaagtgtagtgtactagtctttcatgcttttgttggggtccttgtacttgaagaagtt |
44080318 |
T |
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| Q |
118 |
gaaagtgatggaaattgtatccactcatcaatagccacattcacatcccaaaatagagcattgctctctccaagcatatagcgagagaatataccatgcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44080317 |
gaaagtgatggaaattgtatccactcatcaatagccacattcacatcccaaaatagagcattgctctctcgaagcatatagcgagagaatataccatgcc |
44080218 |
T |
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| Q |
218 |
atactaattagg |
229 |
Q |
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|||||||||||| |
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| T |
44080217 |
atactaattagg |
44080206 |
T |
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