View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3556_low_4 (Length: 537)
Name: NF3556_low_4
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 7705405 - 7705827
Alignment:
| Q |
18 |
atcagtttcatataaatattcatttggttctacaatgtgtccagcgaccgacaaattcaattctgcagattcatggcaccaacctgtgtatcagaaatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705405 |
atcagtttcatataaatattcatttg-ttctacaatg-gtccagcgaccgaaaaattcaattctgcagattcatggcaccaacctgtgtatcagaaatta |
7705502 |
T |
|
| Q |
118 |
aattttaccgtgattcaaatcatgtagaatgttttgccaatgtcattcttcaatagcaatataaaccatgtagatcctttaagcaataaaattattaatt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705503 |
aattttacagtgattcaaatcatgtagaatgttttgccaatgtcattcttcaatagcaatataagccatgtagatcctttaagcaataaaattattaatt |
7705602 |
T |
|
| Q |
218 |
gttaatgcttatcgctaattctaaccagtgcatcatattggattacgtaaggaa-----------agggatgaaatatgaaaaggaaattaagaaataaa |
306 |
Q |
| |
|
||||||||||||||||||| | || |||||||| ||| ||||||||||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
7705603 |
gttaatgcttatcgctaatgccaatcagtgcataata------tacgtaaggaagggatgaaatgaggaatgatatatgaaaaggaaattaagaaataaa |
7705696 |
T |
|
| Q |
307 |
tagaggaaaatggaagtaattgaaacatgaatttccttattattgacaacatgatttcaaaact-taagtacataataattcaactattcagatagtaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
7705697 |
tagaggaaaatggaagtaattgaaacatgaatttccttattattgacaacatgattttaaaattcaaaatacataataattcaactattcagatagta-- |
7705794 |
T |
|
| Q |
406 |
ataatcgattttacatgtgcacaatatataacc |
438 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |
|
|
| T |
7705795 |
ataatcaattttacatgtgaacaatatataacc |
7705827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 7705887 - 7705938
Alignment:
| Q |
471 |
taaagactacgctacaattcttcatatatcttcaaacttttatccatgttat |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705887 |
taaagactacgctacaattcttcatatatcttcaaacttttatccatgttat |
7705938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University