View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_low_6 (Length: 522)
Name: NF3556_low_6
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 39674768 - 39674327
Alignment:
| Q |
18 |
aagatcaccaatgataatgccattgtctcaatctcaaagggatttagctacacacacaatgttagaatcctcacaggaatattcagaagcacttttaatg |
117 |
Q |
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| T |
39674768 |
aagatcaccaacgataatgccattgtctcaatctcaaagggatttagctacacacacaatgttagaatcctcacaggaatattcagaagcacttttaatg |
39674669 |
T |
|
| Q |
118 |
agtgatttgatcaatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataagccagcgatgatggatttggttccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39674668 |
ggtgatttgatcaatcactataatatcggtggattagcttgaacagaagccccaagaaaatttctcgtgaataagccagcaatgatggatttggttccat |
39674569 |
T |
|
| Q |
218 |
tgtgctgctttcatattcaaatgggtgttgctcctttggtgaatgaaagttcaagcaatagtacttcaaccatgagttgaaaatacaggtggattaatct |
317 |
Q |
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| T |
39674568 |
tgtgctgctttcatattcaaatgggtgttgctcctttggtgaatgaaagttcaagcaatagtacttcaaccatgagttgaaaatgcaggtggattaatct |
39674469 |
T |
|
| Q |
318 |
catgggaaagtagttgctggatgctttgttgcagtttgaagtcaatgcagtaaaatgtgaaggattcatcaagtcaaatttcatggcaaggacaattgct |
417 |
Q |
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| T |
39674468 |
catgagaaagtagttgttggatgctttgttgcagtttgaagtcaatgcagtaaaatgtgaagaattcatcaagtcaaatttcatggcaaggacaattgct |
39674369 |
T |
|
| Q |
418 |
gactcataatagttcatggcgagattgtattaacatatgtat |
459 |
Q |
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| T |
39674368 |
gactcgtaatagttcatggcgagattgtattaacatatgtat |
39674327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 19968417 - 19968507
Alignment:
| Q |
102 |
agaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataag |
192 |
Q |
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| T |
19968417 |
agaagcacttctaatgagtgatttgaattatcactataatattggttgtatagttttaacaaaagcttcaagaaaatttctcgcgaataag |
19968507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 34626301 - 34626172
Alignment:
| Q |
62 |
tagctacacacacaatgttagaatcctcacaggaatattcagaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaac |
161 |
Q |
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||||||||||||||||| ||||||||||||| || || |||||| | ||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
34626301 |
tagctacacacacaatgctagaatcctcacatgactactcagaatcccttctaatgagtgatttgattaatcactataatattggtggattagctttaac |
34626202 |
T |
|
| Q |
162 |
agaagccccaagaaaatttctcgtgaataa |
191 |
Q |
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| T |
34626201 |
agaagcttcaagaatatttcttatgaataa |
34626172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 34625986 - 34625940
Alignment:
| Q |
248 |
ctcctttggtgaatgaaagttcaagcaatagtacttcaaccatgagt |
294 |
Q |
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| T |
34625986 |
ctcctttggtgaatgaaagttcaagcaatagtacttcaaccatgagt |
34625940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 40037588 - 40037525
Alignment:
| Q |
100 |
tcagaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacag |
163 |
Q |
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||||||||| || ||||||| ||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
40037588 |
tcagaagcatttctaatgagcgatttgaattatcactataatattggtggtttagctttaacag |
40037525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 51044880 - 51044923
Alignment:
| Q |
75 |
aatgttagaatcctcacaggaatattcagaagcacttttaatga |
118 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |||||| |
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| T |
51044880 |
aatgctagaatcctcacatgaatattcagaagcacttctaatga |
51044923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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