View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3556_low_7 (Length: 472)
Name: NF3556_low_7
Description: NF3556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3556_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Original strand, 5414331 - 5414780
Alignment:
| Q |
17 |
caaaatcacatacacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaacaat |
116 |
Q |
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| T |
5414331 |
caaaatcacatacacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaacaat |
5414430 |
T |
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| Q |
117 |
cattaagtgcaactaagaatgttagttattcaataaaattgaggtgttacatgnnnnnnngagaaatgttaaacttaaaacttgtgagtgaaaatatatt |
216 |
Q |
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| T |
5414431 |
cattaagtgcaactaagaatgttagttattcaataaaattgaggtgttacatgtttttttgagaaatgttaaacttaaaacttgtgagtgaaaatatatt |
5414530 |
T |
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| Q |
217 |
tgagaggccaatcacagaagcatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattatcaaattcatgatataaggg |
316 |
Q |
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| T |
5414531 |
tgagaggccaatcacagaagtatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattgtcaaattcatgatataaggg |
5414630 |
T |
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| Q |
317 |
ggg----ttaactatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttc |
412 |
Q |
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| T |
5414631 |
gggttaattaactatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttc |
5414730 |
T |
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| Q |
413 |
tcaaatagtttttctcatcaattgtttgtcaatagcagagccacattcat |
462 |
Q |
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| T |
5414731 |
tcaaatagtttttctcatcaattgtttgtcaatagcagagccacattcat |
5414780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 5398437 - 5398483
Alignment:
| Q |
195 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
241 |
Q |
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| T |
5398437 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5398483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 5406687 - 5406641
Alignment:
| Q |
195 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
241 |
Q |
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| T |
5406687 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5406641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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