View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3557_high_1 (Length: 252)
Name: NF3557_high_1
Description: NF3557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3557_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44371703 - 44371943
Alignment:
| Q |
1 |
atcattgacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatatcatcgaca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371703 |
atcattaacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatatcatcgaca |
44371802 |
T |
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| Q |
101 |
tcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccggttttcttccgttgattgtcggaagtcttcttcgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44371803 |
tcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccagttttcttccgttgattgtcggaagtcttcttcgact |
44371902 |
T |
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| Q |
201 |
tcttttttgctgtgtggcggttagcgtcgcctctctccttt |
241 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
44371903 |
tcttttttgcggtgtggcggttagcgtcgcctctctccttt |
44371943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44380558 - 44380798
Alignment:
| Q |
1 |
atcattgacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatatcatcgaca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44380558 |
atcattaacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatatcatcgaca |
44380657 |
T |
|
| Q |
101 |
tcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccggttttcttccgttgattgtcggaagtcttcttcgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44380658 |
tcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccagttttcttccgttgattgtcggaagtcttcttcgact |
44380757 |
T |
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| Q |
201 |
tcttttttgctgtgtggcggttagcgtcgcctctctccttt |
241 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
44380758 |
tcttttttgcggtgtggcggttagcgtcgcctctctccttt |
44380798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 52930245 - 52930485
Alignment:
| Q |
1 |
atcattgacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatatcatcgaca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
52930245 |
atcattgacagatacagggtcgtaacgtttattcttgctggactcttcctcgggtagttcttcttcgtattcgtaaacgtcgctgtcgatttcattgaca |
52930344 |
T |
|
| Q |
101 |
tcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccggttttcttccgttgattgtcggaagtcttcttcgact |
200 |
Q |
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|| || ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
52930345 |
tcgacgggggtagggtttaagtgttcgatctcttttttcaatgatgaaggcaatcgaggacaggttttcttccgttgattgtcggaagtcctcttcgact |
52930444 |
T |
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| Q |
201 |
tcttttttgctgtgtggcggttagcgtcgcctctctccttt |
241 |
Q |
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|||||||| | ||||| ||||| |||||||||||||||||| |
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| T |
52930445 |
tcttttttccggtgtgacggttggcgtcgcctctctccttt |
52930485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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