View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3557_low_1 (Length: 387)
Name: NF3557_low_1
Description: NF3557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3557_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 21459843 - 21460229
Alignment:
| Q |
1 |
gtagaggaaaacacatgaacatattgactaagataaattgctttgaaggttgttgctgatgaatcatacgtggggtggttgttaggctgtttagcgatga |
100 |
Q |
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| T |
21459843 |
gtagaggaaaacacatgaacatattgactaagataaattgctttgaaggttgttgctgatgaatcatacgtggggtggttgttagggtgtttagcgatga |
21459942 |
T |
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| Q |
101 |
gtgagatatgaaggtgaattcttatagtgtagcaccagacaatacataatagtacatgttgagagtttgaacctcaaaccccatctaacaattctatatg |
200 |
Q |
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| T |
21459943 |
gtgagatatgaaggtgaattcttatagtgcagcaccagacaatacataatagtacatgttgagagtttgaacctcaaaccccatctaacaattctatatg |
21460042 |
T |
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| Q |
201 |
catgagtgtaaagctttatggtttggttttcaatttatcatttttcttgtttccatgactcactgaacataatttatctagtagaactcaatggcaggtt |
300 |
Q |
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| T |
21460043 |
catgagtgtaaagctttatggtttggttttcaatttatcatttttcttgtttccatgactcactgaacataatttatctagtagaactcaatggcaggtt |
21460142 |
T |
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| Q |
301 |
tgagatggtaaaatcctccttctaaaatatcatttgcttccgcctactggtttagaattcaatgttgcaaaaattagactcagaagt |
387 |
Q |
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| T |
21460143 |
tgggatggtaaaatcctccttccaaaatatcatttgcttccgcctactggtttagaattcaatgttgcaaaaattagactcagaagt |
21460229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 38913585 - 38913523
Alignment:
| Q |
31 |
agataaattgctttgaaggttgttgctgatgaatcatacgtggggtggttgttaggctgttta |
93 |
Q |
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| T |
38913585 |
agataaattgctttgaaggttgttactgatgaatcatatgtggggtggttgttagggtgttta |
38913523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 2851485 - 2851563
Alignment:
| Q |
304 |
gatggtaaaatcctccttctaaaatatcatttgcttccgcctactggtttagaattcaatgttgcaaaaattagactca |
382 |
Q |
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| T |
2851485 |
gatgataaaatcgtcctcccaaattatcagttgcttctgcccattggtttagaacccaatgttgcaaaagttagactca |
2851563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 2903517 - 2903595
Alignment:
| Q |
304 |
gatggtaaaatcctccttctaaaatatcatttgcttccgcctactggtttagaattcaatgttgcaaaaattagactca |
382 |
Q |
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| T |
2903517 |
gatgataaaatcgtcctcccaaattatcagttgcttctgcccattggtttagaacccaatgttgcaaaagttagactca |
2903595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 42949504 - 42949558
Alignment:
| Q |
226 |
gttttcaatttatcattt-ttcttgtttccatgactcactgaacataatttatct |
279 |
Q |
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| T |
42949504 |
gttttcaatttatcacttgttcttgtttccatgacttactgaacacgatttatct |
42949558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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